Literature DB >> 21290032

Fluorescent DNA-based enzyme sensors.

Nan Dai1, Eric T Kool.   

Abstract

Fluorescent sensors that make use of DNA structures have become widely useful in monitoring enzymatic activities. Early studies focused primarily on enzymes that naturally use DNA or RNA as the substrate. However, recent advances in molecular design have enabled the development of nucleic acid sensors for a wider range of functions, including enzymes that do not normally bind DNA or RNA. Nucleic acid sensors present some potential advantages over classical small-molecule sensors, including water solubility and ease of synthesis. An overview of the multiple strategies under recent development is presented in this critical review, and expected future developments in microarrays, single molecule analysis, and in vivo sensing are discussed (160 references).

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Year:  2011        PMID: 21290032      PMCID: PMC5575859          DOI: 10.1039/c0cs00162g

Source DB:  PubMed          Journal:  Chem Soc Rev        ISSN: 0306-0012            Impact factor:   54.564


  159 in total

1.  Aptamer beacons for the direct detection of proteins.

Authors:  N Hamaguchi; A Ellington; M Stanton
Journal:  Anal Biochem       Date:  2001-07-15       Impact factor: 3.365

2.  Structure-switching signaling aptamers.

Authors:  Razvan Nutiu; Yingfu Li
Journal:  J Am Chem Soc       Date:  2003-04-23       Impact factor: 15.419

3.  Light-switching excimer probes for rapid protein monitoring in complex biological fluids.

Authors:  Chaoyong James Yang; Steffen Jockusch; Marie Vicens; Nicholas J Turro; Weihong Tan
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-21       Impact factor: 11.205

Review 4.  Real-time assays with molecular beacons and other fluorescent nucleic acid hybridization probes.

Authors:  Salvatore A E Marras; Sanjay Tyagi; Fred Russell Kramer
Journal:  Clin Chim Acta       Date:  2005-08-18       Impact factor: 3.786

5.  Real-time monitoring of the activity and kinetics of T4 polynucleotide kinase by a singly labeled DNA-hairpin smart probe coupled with lambda exonuclease cleavage.

Authors:  Chen Song; Meiping Zhao
Journal:  Anal Chem       Date:  2009-02-15       Impact factor: 6.986

6.  Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics.

Authors:  Hari Shroff; Catherine G Galbraith; James A Galbraith; Eric Betzig
Journal:  Nat Methods       Date:  2008-04-13       Impact factor: 28.547

7.  Single molecule measurement of the "speed limit" of DNA polymerase.

Authors:  Jerrod J Schwartz; Stephen R Quake
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-11       Impact factor: 11.205

8.  Kinetic mechanism of damage site recognition and uracil flipping by Escherichia coli uracil DNA glycosylase.

Authors:  J T Stivers; K W Pankiewicz; K A Watanabe
Journal:  Biochemistry       Date:  1999-01-19       Impact factor: 3.162

9.  Equilibrium and stopped-flow kinetic studies of interaction between T7 RNA polymerase and its promoters measured by protein and 2-aminopurine fluorescence changes.

Authors:  Y Jia; A Kumar; S S Patel
Journal:  J Biol Chem       Date:  1996-11-29       Impact factor: 5.157

Review 10.  Fluorescent pteridine nucleoside analogs: a window on DNA interactions.

Authors:  M E Hawkins
Journal:  Cell Biochem Biophys       Date:  2001       Impact factor: 2.194

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  19 in total

1.  Reversible thrombin detection by aptamer functionalized STING sensors.

Authors:  Paolo Actis; Adam Rogers; Jeff Nivala; Boaz Vilozny; R Adam Seger; Olufisayo Jejelowo; Nader Pourmand
Journal:  Biosens Bioelectron       Date:  2011-05-12       Impact factor: 10.618

Review 2.  DNA-multichromophore systems.

Authors:  Yin Nah Teo; Eric T Kool
Journal:  Chem Rev       Date:  2012-03-16       Impact factor: 60.622

3.  DNA polyfluorophores for real-time multicolor tracking of dynamic biological systems.

Authors:  Shenliang Wang; Jia Guo; Toshikazu Ono; Eric T Kool
Journal:  Angew Chem Int Ed Engl       Date:  2012-06-08       Impact factor: 15.336

Review 4.  Fluorescent nucleobases as tools for studying DNA and RNA.

Authors:  Wang Xu; Ke Min Chan; Eric T Kool
Journal:  Nat Chem       Date:  2017-10-16       Impact factor: 24.427

5.  A New Variant of Emissive RNA Alphabets.

Authors:  Paul T Ludford; Shenghua Yang; Marcela S Bucardo; Yitzhak Tor
Journal:  Chemistry       Date:  2022-02-02       Impact factor: 5.236

6.  Recent Advances in Design of Fluorescence-Based Assays for High-Throughput Screening.

Authors:  Xiaoni Fang; Yongzan Zheng; Yaokai Duan; Yang Liu; Wenwan Zhong
Journal:  Anal Chem       Date:  2018-12-10       Impact factor: 6.986

7.  Biomechanics of Collective Cell Migration in Cancer Progression: Experimental and Computational Methods.

Authors:  Catalina-Paula Spatarelu; Hao Zhang; Dung Trung Nguyen; Xinyue Han; Ruchuan Liu; Qiaohang Guo; Jacob Notbohm; Jing Fan; Liyu Liu; Zi Chen
Journal:  ACS Biomater Sci Eng       Date:  2019-05-22

8.  Selective fluorogenic chemosensors for distinct classes of nucleases.

Authors:  Jong-Wha Jung; Sarah K Edwards; Eric T Kool
Journal:  Chembiochem       Date:  2013-02-01       Impact factor: 3.164

9.  Efficient synthesis of fluorescent alkynyl C-nucleosides via Sonogashira coupling for the preparation of DNA-based polyfluorophores.

Authors:  Dominik K Kölmel; Luzi J Barandun; Eric T Kool
Journal:  Org Biomol Chem       Date:  2016-07-06       Impact factor: 3.876

Review 10.  Luminescent detection of DNA-binding proteins.

Authors:  Chung-Hang Leung; Daniel Shiu-Hin Chan; Hong-Zhang He; Zhen Cheng; Hui Yang; Dik-Lung Ma
Journal:  Nucleic Acids Res       Date:  2011-10-03       Impact factor: 16.971

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