Literature DB >> 16111667

Real-time assays with molecular beacons and other fluorescent nucleic acid hybridization probes.

Salvatore A E Marras1, Sanjay Tyagi, Fred Russell Kramer.   

Abstract

BACKGROUND: A number of formats for nucleic acid hybridization have been developed to identify DNA and RNA sequences that are involved in cellular processes and that aid in the diagnosis of genetic and infectious diseases.
METHODS: The introduction of hybridization probes with interactive fluorophore pairs has enabled the development of homogeneous hybridization assays for the direct identification of nucleic acids. A change in the fluorescence of these probes indicates the presence of a target nucleic acid, and there is no need to separate unbound probes from hybridized probes.
CONCLUSIONS: The advantages of homogeneous hybridization assays are their speed and simplicity. In addition, homogeneous assays can be combined with nucleic acid amplification, enabling the detection of rare target nucleic acids. These assays can be followed in real time, providing quantitative determination of target nucleic acids over a broad range of concentrations.

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Year:  2005        PMID: 16111667     DOI: 10.1016/j.cccn.2005.04.037

Source DB:  PubMed          Journal:  Clin Chim Acta        ISSN: 0009-8981            Impact factor:   3.786


  61 in total

1.  Molecular-beacon-based tricomponent probe for SNP analysis in folded nucleic acids.

Authors:  Camha Nguyen; Jeffrey Grimes; Yulia V Gerasimova; Dmitry M Kolpashchikov
Journal:  Chemistry       Date:  2011-09-28       Impact factor: 5.236

2.  Design and Development of a Multiplex Real-Time PCR Assay for Detection of HIV-1 and HCV Using Molecular Beacons.

Authors:  Mahdi Paryan; Samira Mohammadi-Yeganeh; Siamak Mirab Samiee; Houri Rezvan
Journal:  Indian J Microbiol       Date:  2012-05-11       Impact factor: 2.461

3.  DNA nanotechnology for nucleic acid analysis: DX motif-based sensor.

Authors:  Dmitry M Kolpashchikov; Yulia V Gerasimova; Mohammad S Khan
Journal:  Chembiochem       Date:  2011-10-18       Impact factor: 3.164

4.  Real-time quantification of RNA polymerase activity using a "broken beacon".

Authors:  Rebecca H Blair; Eric S Rosenblum; Erica D Dawson; Robert D Kuchta; Laura R Kuck; Kathy L Rowlen
Journal:  Anal Biochem       Date:  2006-12-29       Impact factor: 3.365

5.  Inorganic-organic hybrid luminescent binary probe for DNA detection based on spin-forbidden resonance energy transfer.

Authors:  Angel A Martí; Cindy A Puckett; Joanne Dyer; Nathan Stevens; Steffen Jockusch; Jingyue Ju; Jacqueline K Barton; Nicholas J Turro
Journal:  J Am Chem Soc       Date:  2007-06-26       Impact factor: 15.419

6.  A novel sequence-specific RNA quantification method using nicking endonuclease, dual-labeled fluorescent DNA probe, and conformation-interchangeable oligo-DNA.

Authors:  Kazufumi Hosoda; Tomoaki Matsuura; Hiroshi Kita; Norikazu Ichihashi; Koji Tsukada; Itaru Urabe; Tetsuya Yomo
Journal:  RNA       Date:  2008-01-29       Impact factor: 4.942

7.  Rapid genotyping using pyrene-perylene locked nucleic acid complexes.

Authors:  T Santhosh Kumar; Anna Myznikova; Evgeniya Samokhina; Irina Kira Astakhova
Journal:  Artif DNA PNA XNA       Date:  2013 Apr-Jun

8.  Thermodynamic basis for engineering high-affinity, high-specificity binding-induced DNA clamp nanoswitches.

Authors:  Andrea Idili; Kevin W Plaxco; Alexis Vallée-Bélisle; Francesco Ricci
Journal:  ACS Nano       Date:  2013-11-20       Impact factor: 15.881

9.  The use of molecular beacons to directly measure bacterial mRNA abundances and transcript degradation.

Authors:  Lisa J Kuechenmeister; Kelsi L Anderson; John M Morrison; Paul M Dunman
Journal:  J Microbiol Methods       Date:  2008-10-25       Impact factor: 2.363

10.  Design and characterization of two-dye and three-dye binary fluorescent probes for mRNA detection.

Authors:  Angel A Martí; Xiaoxu Li; Steffen Jockusch; Nathan Stevens; Zengmin Li; Bindu Raveendra; Sergey Kalachikov; Irina Morozova; James J Russo; Daniel L Akins; Jingyue Ju; Nicholas J Turro
Journal:  Tetrahedron       Date:  2007-04-23       Impact factor: 2.457

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