Literature DB >> 21266494

Computational models of VEGF-associated angiogenic processes in cancer.

Marianne O Stefanini1, Amina A Qutub, Feilim Mac Gabhann, Aleksander S Popel.   

Abstract

Tumour angiogenesis allows a growing mass of cancer cells to overcome oxygen diffusion limitation and to increase cell survival. The growth of capillaries from pre-existing blood vessels is the result of numerous signalling cascades involving different molecules and of cellular events involving multiple cell and tissue types. Computational models offer insight into the mechanisms governing angiogenesis and provide quantitative information on parameters difficult to assess by experiments alone. In this article, we summarize results from computational models of tumour angiogenic processes with a focus on the molecular-detailed vascular endothelial growth factor-associated models that have been developed in our laboratory, spanning multiple scales from the molecular to whole body.

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Year:  2011        PMID: 21266494      PMCID: PMC4104688          DOI: 10.1093/imammb/dqq025

Source DB:  PubMed          Journal:  Math Med Biol        ISSN: 1477-8599            Impact factor:   1.854


  43 in total

1.  A hybrid model for three-dimensional simulations of sprouting angiogenesis.

Authors:  Florian Milde; Michael Bergdorf; Petros Koumoutsakos
Journal:  Biophys J       Date:  2008-06-27       Impact factor: 4.033

Review 2.  Exploring the role of HIF-1 in early angiogenesis and response to radiotherapy.

Authors:  Mark W Dewhirst; Yiting Cao; Chuan Yuan Li; Benjamin Moeller
Journal:  Radiother Oncol       Date:  2007-06-08       Impact factor: 6.280

Review 3.  Dissecting cancer through mathematics: from the cell to the animal model.

Authors:  Helen M Byrne
Journal:  Nat Rev Cancer       Date:  2010-03       Impact factor: 60.716

Review 4.  Harnessing systems biology approaches to engineer functional microvascular networks.

Authors:  Lauren S Sefcik; Jennifer L Wilson; Jason A Papin; Edward A Botchwey
Journal:  Tissue Eng Part B Rev       Date:  2010-06       Impact factor: 6.389

5.  A computational model of intracellular oxygen sensing by hypoxia-inducible factor HIF1 alpha.

Authors:  Amina A Qutub; Aleksander S Popel
Journal:  J Cell Sci       Date:  2006-08-15       Impact factor: 5.285

6.  Distinct modes of collagen type I proteolysis by matrix metalloproteinase (MMP) 2 and membrane type I MMP during the migration of a tip endothelial cell: insights from a computational model.

Authors:  Emmanouil D Karagiannis; Aleksander S Popel
Journal:  J Theor Biol       Date:  2005-07-06       Impact factor: 2.691

7.  Gene regulation in response to graded hypoxia: the non-redundant roles of the oxygen sensors PHD and FIH in the HIF pathway.

Authors:  Frédéric Dayan; Marc Monticelli; Jacques Pouysségur; Elisabeth Pécou
Journal:  J Theor Biol       Date:  2009-03-17       Impact factor: 2.691

8.  Skeletal muscle VEGF gradients in peripheral arterial disease: simulations of rest and exercise.

Authors:  James W Ji; Feilim Mac Gabhann; Aleksander S Popel
Journal:  Am J Physiol Heart Circ Physiol       Date:  2007-09-21       Impact factor: 4.733

9.  Agent-based simulation of notch-mediated tip cell selection in angiogenic sprout initialisation.

Authors:  Katie Bentley; Holger Gerhardt; Paul A Bates
Journal:  J Theor Biol       Date:  2007-09-19       Impact factor: 2.691

10.  The presence of VEGF receptors on the luminal surface of endothelial cells affects VEGF distribution and VEGF signaling.

Authors:  Marianne O Stefanini; Florence T H Wu; Feilim Mac Gabhann; Aleksander S Popel
Journal:  PLoS Comput Biol       Date:  2009-12-24       Impact factor: 4.475

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  14 in total

Review 1.  Integration of experimental and computational approaches to sprouting angiogenesis.

Authors:  Shayn M Peirce; Feilim Mac Gabhann; Victoria L Bautch
Journal:  Curr Opin Hematol       Date:  2012-05       Impact factor: 3.284

Review 2.  Systems biology of the microvasculature.

Authors:  Lindsay E Clegg; Feilim Mac Gabhann
Journal:  Integr Biol (Camb)       Date:  2015-04-02       Impact factor: 2.192

Review 3.  Multiscale imaging and computational modeling of blood flow in the tumor vasculature.

Authors:  Eugene Kim; Spyros Stamatelos; Jana Cebulla; Zaver M Bhujwalla; Aleksander S Popel; Arvind P Pathak
Journal:  Ann Biomed Eng       Date:  2012-05-08       Impact factor: 3.934

Review 4.  Manipulating the microvasculature and its microenvironment.

Authors:  Laxminarayanan Krishnan; Carlos C Chang; Sara S Nunes; Stuart K Williams; Jeffrey A Weiss; James B Hoying
Journal:  Crit Rev Biomed Eng       Date:  2013

Review 5.  Stimulus-responsive ultrasound contrast agents for clinical imaging: motivations, demonstrations, and future directions.

Authors:  Andrew P Goodwin; Matthew A Nakatsuka; Robert F Mattrey
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2014-09-06

6.  A two-compartment model of VEGF distribution in the mouse.

Authors:  Phillip Yen; Stacey D Finley; Marianne O Engel-Stefanini; Aleksander S Popel
Journal:  PLoS One       Date:  2011-11-08       Impact factor: 3.240

7.  Pharmacokinetics and pharmacodynamics of VEGF-neutralizing antibodies.

Authors:  Stacey D Finley; Marianne O Engel-Stefanini; P I Imoukhuede; Aleksander S Popel
Journal:  BMC Syst Biol       Date:  2011-11-21

8.  Compartment model predicts VEGF secretion and investigates the effects of VEGF trap in tumor-bearing mice.

Authors:  Stacey D Finley; Manjima Dhar; Aleksander S Popel
Journal:  Front Oncol       Date:  2013-07-30       Impact factor: 6.244

9.  Optimal chemotherapy for leukemia: a model-based strategy for individualized treatment.

Authors:  Devaraj Jayachandran; Ann E Rundell; Robert E Hannemann; Terry A Vik; Doraiswami Ramkrishna
Journal:  PLoS One       Date:  2014-10-13       Impact factor: 3.240

10.  Applying systems biology methods to the study of human physiology in extreme environments.

Authors:  Lindsay M Edwards; Ines Thiele
Journal:  Extrem Physiol Med       Date:  2013-03-22
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