Literature DB >> 25839068

Systems biology of the microvasculature.

Lindsay E Clegg1, Feilim Mac Gabhann.   

Abstract

The vascular network carries blood throughout the body, delivering oxygen to tissues and providing a pathway for communication between distant organs. The network is hierarchical and structured, but also dynamic, especially at the smaller scales. Remodeling of the microvasculature occurs in response to local changes in oxygen, gene expression, cell-cell communication, and chemical and mechanical stimuli from the microenvironment. These local changes occur as a result of physiological processes such as growth and exercise, as well as acute and chronic diseases including stroke, cancer, and diabetes, and pharmacological intervention. While the vasculature is an important therapeutic target in many diseases, drugs designed to inhibit vascular growth have achieved only limited success, and no drug has yet been approved to promote therapeutic vascular remodeling. This highlights the challenges involved in identifying appropriate therapeutic targets in a system as complex as the vasculature. Systems biology approaches provide a means to bridge current understanding of the vascular system, from detailed signaling dynamics measured in vitro and pre-clinical animal models of vascular disease, to a more complete picture of vascular regulation in vivo. This will translate to an improved ability to identify multi-component biomarkers for diagnosis, prognosis, and monitoring of therapy that are easy to measure in vivo, as well as better drug targets for specific disease states. In this review, we summarize systems biology approaches that have advanced our understanding of vascular function and dysfunction in vivo, with a focus on computational modeling.

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Year:  2015        PMID: 25839068      PMCID: PMC4429012          DOI: 10.1039/c4ib00296b

Source DB:  PubMed          Journal:  Integr Biol (Camb)        ISSN: 1757-9694            Impact factor:   2.192


  148 in total

1.  Remodeling of blood vessels: responses of diameter and wall thickness to hemodynamic and metabolic stimuli.

Authors:  Axel R Pries; Bettina Reglin; Timothy W Secomb
Journal:  Hypertension       Date:  2005-09-19       Impact factor: 10.190

2.  A cell-based model exhibiting branching and anastomosis during tumor-induced angiogenesis.

Authors:  Amy L Bauer; Trachette L Jackson; Yi Jiang
Journal:  Biophys J       Date:  2007-02-02       Impact factor: 4.033

3.  Multi-scale computational models of pro-angiogenic treatments in peripheral arterial disease.

Authors:  Feilim Mac Gabhann; James W Ji; Aleksander S Popel
Journal:  Ann Biomed Eng       Date:  2007-04-10       Impact factor: 3.934

Review 4.  Microenvironmental regulation of tumor progression and metastasis.

Authors:  Daniela F Quail; Johanna A Joyce
Journal:  Nat Med       Date:  2013-11       Impact factor: 53.440

5.  Potential mechanisms for the regulation of growth factor binding by heparin.

Authors:  K E Forsten; M Fannon; M A Nugent
Journal:  J Theor Biol       Date:  2000-07-21       Impact factor: 2.691

Review 6.  Extracellular regulation of VEGF: isoforms, proteolysis, and vascular patterning.

Authors:  Prakash Vempati; Aleksander S Popel; Feilim Mac Gabhann
Journal:  Cytokine Growth Factor Rev       Date:  2013-11-27       Impact factor: 7.638

7.  The anti-VEGF antibody bevacizumab potently reduces the growth rate of high-risk neuroblastoma xenografts.

Authors:  Lova Segerström; Dieter Fuchs; Ulrika Bäckman; Kajsa Holmquist; Rolf Christofferson; Faranak Azarbayjani
Journal:  Pediatr Res       Date:  2006-09-20       Impact factor: 3.756

Review 8.  Modeling of angioadaptation: insights for vascular development.

Authors:  Axel R Pries; Bettina Reglin; Timothy W Secomb
Journal:  Int J Dev Biol       Date:  2011       Impact factor: 2.203

9.  Contact-inhibited chemotaxis in de novo and sprouting blood-vessel growth.

Authors:  Roeland M H Merks; Erica D Perryn; Abbas Shirinifard; James A Glazier
Journal:  PLoS Comput Biol       Date:  2008-09-19       Impact factor: 4.475

10.  Quantitative fluorescent profiling of VEGFRs reveals tumor cell and endothelial cell heterogeneity in breast cancer xenografts.

Authors:  Princess I Imoukhuede; Aleksander S Popel
Journal:  Cancer Med       Date:  2014-01-22       Impact factor: 4.452

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  6 in total

Review 1.  Molecular mechanism matters: Benefits of mechanistic computational models for drug development.

Authors:  Lindsay E Clegg; Feilim Mac Gabhann
Journal:  Pharmacol Res       Date:  2015-06-18       Impact factor: 7.658

Review 2.  Context-dependent regulation of receptor tyrosine kinases: Insights from systems biology approaches.

Authors:  Inez Lam; Christina M Pickering; Feilim Mac Gabhann
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2018-09-26

3.  A computational analysis of in vivo VEGFR activation by multiple co-expressed ligands.

Authors:  Lindsay E Clegg; Feilim Mac Gabhann
Journal:  PLoS Comput Biol       Date:  2017-03-20       Impact factor: 4.475

4.  Socioeconomic status and early blood concentrations of inflammation-related and neurotrophic proteins among extremely preterm newborns.

Authors:  Alan Leviton; Elizabeth N Allred; Olaf Dammann; Robert M Joseph; Raina N Fichorova; T Michael O'Shea; Karl C K Kuban
Journal:  PLoS One       Date:  2019-03-26       Impact factor: 3.240

5.  Deciphering microvascular changes after myocardial infarction through 3D fully automated image analysis.

Authors:  Polyxeni Gkontra; Kerri-Ann Norton; Magdalena M Żak; Cristina Clemente; Jaume Agüero; Borja Ibáñez; Andrés Santos; Aleksander S Popel; Alicia G Arroyo
Journal:  Sci Rep       Date:  2018-01-30       Impact factor: 4.379

6.  Parahippocampal gyrus expression of endothelial and insulin receptor signaling pathway genes is modulated by Alzheimer's disease and normalized by treatment with anti-diabetic agents.

Authors:  P Katsel; P Roussos; M S Beeri; M A Gama-Sosa; S Gandy; S Khan; V Haroutunian
Journal:  PLoS One       Date:  2018-11-01       Impact factor: 3.240

  6 in total

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