Literature DB >> 22406822

Integration of experimental and computational approaches to sprouting angiogenesis.

Shayn M Peirce1, Feilim Mac Gabhann, Victoria L Bautch.   

Abstract

PURPOSE OF REVIEW: We summarize recent experimental and computational studies that investigate molecular and cellular mechanisms of sprouting angiogenesis. We discuss how experimental tools have unveiled new opportunities for computational modeling by providing detailed phenomenological descriptions and conceptual models of cell-level behaviors underpinned by high-quality molecular data. Using recent examples, we show how new understanding results from bridging computational and experimental approaches. RECENT
FINDINGS: Experimental data extends beyond the tip cell vs. stalk cell paradigm, and involves numerous molecular inputs such as vascular endothelial growth factor and Notch. This data is being used to generate and validate computational models, which can then be used to predict the results of hypothetical experiments that are difficult to perform in the laboratory, and to generate new hypotheses that account for system-wide interactions. As a result of this integration, descriptions of critical gradients of growth factor-receptor complexes have been generated, and new modulators of cell behavior have been described.
SUMMARY: We suggest that the recent emphasis on the different stages of sprouting angiogenesis, and integration of experimental and computational approaches, should provide a way to manage the complexity of this process and help identify new regulatory paradigms and therapeutic targets.

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Year:  2012        PMID: 22406822      PMCID: PMC4132663          DOI: 10.1097/MOH.0b013e3283523ea6

Source DB:  PubMed          Journal:  Curr Opin Hematol        ISSN: 1065-6251            Impact factor:   3.284


  42 in total

1.  In vitro differentiation of mouse ES cells: hematopoietic and vascular development.

Authors:  Joseph B Kearney; Victoria L Bautch
Journal:  Methods Enzymol       Date:  2003       Impact factor: 1.600

2.  Dll4 signalling through Notch1 regulates formation of tip cells during angiogenesis.

Authors:  Mats Hellström; Li-Kun Phng; Jennifer J Hofmann; Elisabet Wallgard; Leigh Coultas; Per Lindblom; Jackelyn Alva; Ann-Katrin Nilsson; Linda Karlsson; Nicholas Gaiano; Keejung Yoon; Janet Rossant; M Luisa Iruela-Arispe; Mattias Kalén; Holger Gerhardt; Christer Betsholtz
Journal:  Nature       Date:  2007-01-28       Impact factor: 49.962

3.  Vascular sprout formation entails tissue deformations and VE-cadherin-dependent cell-autonomous motility.

Authors:  Erica D Perryn; András Czirók; Charles D Little
Journal:  Dev Biol       Date:  2007-11-04       Impact factor: 3.582

4.  Optimized fibrin gel bead assay for the study of angiogenesis.

Authors:  Martin N Nakatsu; Jaeger Davis; Christopher C W Hughes
Journal:  J Vis Exp       Date:  2007-04-29       Impact factor: 1.355

5.  VEGF and soluble VEGF receptor-1 (sFlt-1) distributions in peripheral arterial disease: an in silico model.

Authors:  Florence T H Wu; Marianne O Stefanini; Feilim Mac Gabhann; Christopher D Kontos; Brian H Annex; Aleksander S Popel
Journal:  Am J Physiol Heart Circ Physiol       Date:  2010-04-09       Impact factor: 4.733

Review 6.  Multiscale cancer modeling.

Authors:  Thomas S Deisboeck; Zhihui Wang; Paul Macklin; Vittorio Cristini
Journal:  Annu Rev Biomed Eng       Date:  2011-08-15       Impact factor: 9.590

7.  Heterozygous deficiency of PHD2 restores tumor oxygenation and inhibits metastasis via endothelial normalization.

Authors:  Massimiliano Mazzone; Daniela Dettori; Rodrigo Leite de Oliveira; Sonja Loges; Thomas Schmidt; Bart Jonckx; Ya-Min Tian; Anthony A Lanahan; Patrick Pollard; Carmen Ruiz de Almodovar; Frederik De Smet; Stefan Vinckier; Julián Aragonés; Koen Debackere; Aernout Luttun; Sabine Wyns; Benedicte Jordan; Alberto Pisacane; Bernard Gallez; Maria Grazia Lampugnani; Elisabetta Dejana; Michael Simons; Peter Ratcliffe; Patrick Maxwell; Peter Carmeliet
Journal:  Cell       Date:  2009-02-12       Impact factor: 41.582

8.  Agent-based simulation of notch-mediated tip cell selection in angiogenic sprout initialisation.

Authors:  Katie Bentley; Holger Gerhardt; Paul A Bates
Journal:  J Theor Biol       Date:  2007-09-19       Impact factor: 2.691

9.  Computational modeling of interacting VEGF and soluble VEGF receptor concentration gradients.

Authors:  Yasmin L Hashambhoy; John C Chappell; Shayn M Peirce; Victoria L Bautch; Feilim Mac Gabhann
Journal:  Front Physiol       Date:  2011-10-04       Impact factor: 4.566

10.  Contact-inhibited chemotaxis in de novo and sprouting blood-vessel growth.

Authors:  Roeland M H Merks; Erica D Perryn; Abbas Shirinifard; James A Glazier
Journal:  PLoS Comput Biol       Date:  2008-09-19       Impact factor: 4.475

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  15 in total

Review 1.  Applications of computational models to better understand microvascular remodelling: a focus on biomechanical integration across scales.

Authors:  Walter L Murfee; Richard S Sweat; Ken-Ichi Tsubota; Feilim Mac Gabhann; Damir Khismatullin; Shayn M Peirce
Journal:  Interface Focus       Date:  2015-04-06       Impact factor: 3.906

2.  A review of computational and mathematical modeling contributions to our understanding of Mycobacterium tuberculosis within-host infection and treatment.

Authors:  Denise Kirschner; Elsje Pienaar; Simeone Marino; Jennifer J Linderman
Journal:  Curr Opin Syst Biol       Date:  2017-05-22

Review 3.  Stem Cell Sources and Graft Material for Vascular Tissue Engineering.

Authors:  Dorothee Hielscher; Constanze Kaebisch; Benedikt Julius Valentin Braun; Kevin Gray; Edda Tobiasch
Journal:  Stem Cell Rev Rep       Date:  2018-10       Impact factor: 5.739

4.  An Ex Vivo Method for Time-Lapse Imaging of Cultured Rat Mesenteric Microvascular Networks.

Authors:  Mohammad S Azimi; Jessica M Motherwell; Walter L Murfee
Journal:  J Vis Exp       Date:  2017-02-09       Impact factor: 1.355

Review 5.  Hypoxia, angiogenesis, and metabolism in the hereditary kidney cancers.

Authors:  John C Chappell; Laura Beth Payne; W Kimryn Rathmell
Journal:  J Clin Invest       Date:  2019-01-07       Impact factor: 14.808

Review 6.  Manipulating the microvasculature and its microenvironment.

Authors:  Laxminarayanan Krishnan; Carlos C Chang; Sara S Nunes; Stuart K Williams; Jeffrey A Weiss; James B Hoying
Journal:  Crit Rev Biomed Eng       Date:  2013

Review 7.  Multiscale models of breast cancer progression.

Authors:  Anirikh Chakrabarti; Scott Verbridge; Abraham D Stroock; Claudia Fischbach; Jeffrey D Varner
Journal:  Ann Biomed Eng       Date:  2012-09-25       Impact factor: 3.934

8.  Assessing the Minimum Time-Period of Normoxic Preincubation for Stable Adipose Stromal Cell-Derived Vascular Networks.

Authors:  Ethan Nyberg; Warren Grayson
Journal:  Cell Mol Bioeng       Date:  2018-07-17       Impact factor: 2.321

9.  Pericyte migration and proliferation are tightly synchronized to endothelial cell sprouting dynamics.

Authors:  Laura Beth Payne; Jordan Darden; Ariana D Suarez-Martinez; Huaning Zhao; Alissa Hendricks; Caitlin Hartland; Diana Chong; Erich J Kushner; Walter L Murfee; John C Chappell
Journal:  Integr Biol (Camb)       Date:  2021-02-27       Impact factor: 2.192

Review 10.  Cerebrovascular development: mechanisms and experimental approaches.

Authors:  Timothy J A Chico; Elisabeth C Kugler
Journal:  Cell Mol Life Sci       Date:  2021-03-10       Impact factor: 9.261

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