Literature DB >> 21244848

Improved high-force magnetic tweezers for stretching and refolding of proteins and short DNA.

Hu Chen1, Hongxia Fu, Xiaoying Zhu, Peiwen Cong, Fumihiko Nakamura, Jie Yan.   

Abstract

Although magnetic tweezers have many unique advantages in terms of specificity, throughput, and force stability, this tool has had limited application on short tethers because accurate measurement of force has been difficult for short tethers under large tension. Here, we report a method that allows us to apply magnetic tweezers to stretch short biomolecules with accurate force calibration over a wide range of up to 100 pN. We demonstrate the use of the method by overstretching of a short DNA and unfolding/refolding a protein of filamin A immunoglobulin domains 1-8. Other potential applications of this method are also discussed. Copyright Â
© 2011 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21244848      PMCID: PMC3325116          DOI: 10.1016/j.bpj.2010.12.3700

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  32 in total

Review 1.  Filamins as integrators of cell mechanics and signalling.

Authors:  T P Stossel; J Condeelis; L Cooley; J H Hartwig; A Noegel; M Schleicher; S S Shapiro
Journal:  Nat Rev Mol Cell Biol       Date:  2001-02       Impact factor: 94.444

Review 2.  The co-workers of actin filaments: from cell structures to signals.

Authors:  Céline Revenu; Rafika Athman; Sylvie Robine; Daniel Louvard
Journal:  Nat Rev Mol Cell Biol       Date:  2004-08       Impact factor: 94.444

3.  Nanomechanical measurements of the sequence-dependent folding landscapes of single nucleic acid hairpins.

Authors:  Michael T Woodside; William M Behnke-Parks; Kevan Larizadeh; Kevin Travers; Daniel Herschlag; Steven M Block
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-10       Impact factor: 11.205

4.  Subpiconewton dynamic force spectroscopy using magnetic tweezers.

Authors:  M Kruithof; F Chien; M de Jager; J van Noort
Journal:  Biophys J       Date:  2007-12-07       Impact factor: 4.033

5.  The structure of DNA overstretched from the 5'5' ends differs from the structure of DNA overstretched from the 3'3' ends.

Authors:  Claudia Danilowicz; Charles Limouse; Kristi Hatch; Alyson Conover; Vincent W Coljee; Nancy Kleckner; Mara Prentiss
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-28       Impact factor: 11.205

6.  Effects of kink and flexible hinge defects on mechanical responses of short double-stranded DNA molecules.

Authors:  Hu Chen; Jie Yan
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2008-04-15

7.  Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules.

Authors:  S B Smith; Y Cui; C Bustamante
Journal:  Science       Date:  1996-02-09       Impact factor: 47.728

8.  Mechanical unfolding of single filamin A (ABP-280) molecules detected by atomic force microscopy.

Authors:  S Furuike; T Ito; M Yamazaki
Journal:  FEBS Lett       Date:  2001-06-01       Impact factor: 4.124

9.  Stepwise unfolding of titin under force-clamp atomic force microscopy.

Authors:  A F Oberhauser; P K Hansma; M Carrion-Vazquez; J M Fernandez
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-09       Impact factor: 11.205

10.  Structural basis of filamin A functions.

Authors:  Fumihiko Nakamura; Teresia M Osborn; Christopher A Hartemink; John H Hartwig; Thomas P Stossel
Journal:  J Cell Biol       Date:  2007-12-03       Impact factor: 10.539

View more
  55 in total

1.  Dynamics of equilibrium folding and unfolding transitions of titin immunoglobulin domain under constant forces.

Authors:  Hu Chen; Guohua Yuan; Ricksen S Winardhi; Mingxi Yao; Ionel Popa; Julio M Fernandez; Jie Yan
Journal:  J Am Chem Soc       Date:  2015-03-09       Impact factor: 15.419

2.  Differential mechanical stability of filamin A rod segments.

Authors:  Hu Chen; Xiaoying Zhu; Peiwen Cong; Michael P Sheetz; Fumihiko Nakamura; Jie Yan
Journal:  Biophys J       Date:  2011-09-07       Impact factor: 4.033

3.  Mechano-regulation of Peptide-MHC Class I Conformations Determines TCR Antigen Recognition.

Authors:  Peng Wu; Tongtong Zhang; Baoyu Liu; Panyu Fei; Lei Cui; Rui Qin; Huaying Zhu; Danmei Yao; Ryan J Martinez; Wei Hu; Chenyi An; Yong Zhang; Junwei Liu; Jiawei Shi; Juan Fan; Weiwei Yin; Jie Sun; Chun Zhou; Xun Zeng; Chenqi Xu; Jianan Wang; Brian D Evavold; Cheng Zhu; Wei Chen; Jizhong Lou
Journal:  Mol Cell       Date:  2019-01-30       Impact factor: 17.970

Review 4.  Finding the weakest link: exploring integrin-mediated mechanical molecular pathways.

Authors:  Pere Roca-Cusachs; Thomas Iskratsch; Michael P Sheetz
Journal:  J Cell Sci       Date:  2012-07-13       Impact factor: 5.285

5.  Understanding the physics of DNA using nanoscale single-molecule manipulation.

Authors:  Eric W Frey; Ashton A Gooding; Sitara Wijeratne; Ching-Hwa Kiang
Journal:  Front Phys (Beijing)       Date:  2012-10       Impact factor: 3.563

6.  Probing Small Molecule Binding to Unfolded Polyprotein Based on its Elasticity and Refolding.

Authors:  Ricksen S Winardhi; Qingnan Tang; Jin Chen; Mingxi Yao; Jie Yan
Journal:  Biophys J       Date:  2016-12-06       Impact factor: 4.033

7.  Simple horizontal magnetic tweezers for micromanipulation of single DNA molecules and DNA-protein complexes.

Authors:  Christopher P McAndrew; Christopher Tyson; Joseph Zischkau; Patrick Mehl; Pamela L Tuma; Ian L Pegg; Abhijit Sarkar
Journal:  Biotechniques       Date:  2016-01-01       Impact factor: 1.993

8.  A HaloTag Anchored Ruler for Week-Long Studies of Protein Dynamics.

Authors:  Ionel Popa; Jaime Andrés Rivas-Pardo; Edward C Eckels; Daniel J Echelman; Carmen L Badilla; Jessica Valle-Orero; Julio M Fernández
Journal:  J Am Chem Soc       Date:  2016-08-09       Impact factor: 15.419

9.  Dystrophin As a Molecular Shock Absorber.

Authors:  Shimin Le; Miao Yu; Ladislav Hovan; Zhihai Zhao; James Ervasti; Jie Yan
Journal:  ACS Nano       Date:  2018-11-27       Impact factor: 15.881

10.  ZYH005, a novel DNA intercalator, overcomes all-trans retinoic acid resistance in acute promyelocytic leukemia.

Authors:  Qingyi Tong; Huijuan You; Xintao Chen; Kongchao Wang; Weiguang Sun; Yufeng Pei; Xiaodan Zhao; Ming Yuan; Hucheng Zhu; Zengwei Luo; Yonghui Zhang
Journal:  Nucleic Acids Res       Date:  2018-04-20       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.