Literature DB >> 23467419

Understanding the physics of DNA using nanoscale single-molecule manipulation.

Eric W Frey1, Ashton A Gooding, Sitara Wijeratne, Ching-Hwa Kiang.   

Abstract

Processes for decoding the genetic information in cells, including transcription, replication, recombination and repair, involve the deformation of DNA from its equilibrium structures such as bending, stretching, twisting, and unzipping of the double helix. Single-molecule manipulation techniques have made it possible to control DNA conformation and simultaneously detect the induced changes, revealing a rich variety of mechanically-induced conformational changes and thermodynamic states. These single-molecule techniques helped us to reveal the physics of DNA and the processes involved in the passing on of the genetic code.

Entities:  

Keywords:  single-molecule manipulation; the physics of DNA

Year:  2012        PMID: 23467419      PMCID: PMC3586743          DOI: 10.1007/s11467-012-0261-0

Source DB:  PubMed          Journal:  Front Phys (Beijing)        ISSN: 2095-0462            Impact factor:   3.563


  54 in total

1.  Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA.

Authors:  Brent D Brower-Toland; Corey L Smith; Richard C Yeh; John T Lis; Craig L Peterson; Michelle D Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-19       Impact factor: 11.205

2.  Near-field-magnetic-tweezer manipulation of single DNA molecules.

Authors:  Jie Yan; Dunja Skoko; John F Marko
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-07-12

3.  Functional replacement of a protein-induced bend in a DNA recombination site.

Authors:  S D Goodman; H A Nash
Journal:  Nature       Date:  1989-09-21       Impact factor: 49.962

4.  Simultaneous AFM manipulation and fluorescence imaging of single DNA strands.

Authors:  Andrew Hards; Chunqing Zhou; Markus Seitz; Christoph Bräuchle; Andreas Zumbusch
Journal:  Chemphyschem       Date:  2005-03       Impact factor: 3.102

5.  Single-molecule studies reveal dynamics of DNA unwinding by the ring-shaped T7 helicase.

Authors:  Daniel S Johnson; Lu Bai; Benjamin Y Smith; Smita S Patel; Michelle D Wang
Journal:  Cell       Date:  2007-06-29       Impact factor: 41.582

6.  Stretching, unfolding, and deforming protein filaments adsorbed at solid-liquid interfaces using the tip of an atomic-force microscope.

Authors:  Douglas B Staple; Marko Loparic; Hans Jürgen Kreuzer; Laurent Kreplak
Journal:  Phys Rev Lett       Date:  2009-03-27       Impact factor: 9.161

7.  Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules.

Authors:  S B Smith; Y Cui; C Bustamante
Journal:  Science       Date:  1996-02-09       Impact factor: 47.728

8.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

9.  The helicity of DNA in complexes with recA protein.

Authors:  A Stasiak; E Di Capua
Journal:  Nature       Date:  1982-09-09       Impact factor: 49.962

10.  Stretching single talin rod molecules activates vinculin binding.

Authors:  Armando del Rio; Raul Perez-Jimenez; Ruchuan Liu; Pere Roca-Cusachs; Julio M Fernandez; Michael P Sheetz
Journal:  Science       Date:  2009-01-30       Impact factor: 63.714

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  1 in total

Review 1.  DNA under Force: Mechanics, Electrostatics, and Hydration.

Authors:  Jingqiang Li; Sithara S Wijeratne; Xiangyun Qiu; Ching-Hwa Kiang
Journal:  Nanomaterials (Basel)       Date:  2015-02-25       Impact factor: 5.076

  1 in total

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