Literature DB >> 18065448

Subpiconewton dynamic force spectroscopy using magnetic tweezers.

M Kruithof1, F Chien, M de Jager, J van Noort.   

Abstract

We introduce a simple method for dynamic force spectroscopy with magnetic tweezers. This method allows application of subpiconewton force and twist control by calibration of the applied force from the height of the magnets. Initial dynamic force spectroscopy experiments on DNA molecules revealed a large hysteresis that is caused by viscous drag on the magnetic bead and will conceal weak interactions. When smaller beads are used, this hysteresis is sufficiently reduced to reveal intramolecular interactions at subpiconewton forces. Compared with typical quasistatic force spectroscopy, a significant reduction of measurement time is achieved, allowing the real-time study of transient structures and reaction intermediates. As a proof of principle, nucleosome-nucleosome interactions on a subsaturated chromatin fiber were analyzed.

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Year:  2007        PMID: 18065448      PMCID: PMC2257889          DOI: 10.1529/biophysj.107.121673

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  14 in total

1.  Pulling a single chromatin fiber reveals the forces that maintain its higher-order structure.

Authors:  Y Cui; C Bustamante
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-04       Impact factor: 11.205

2.  Magnetic tweezers: micromanipulation and force measurement at the molecular level.

Authors:  Charlie Gosse; Vincent Croquette
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

Review 3.  Force spectroscopy with single bio-molecules.

Authors:  H Clausen-Schaumann; M Seitz; R Krautbauer; H E Gaub
Journal:  Curr Opin Chem Biol       Date:  2000-10       Impact factor: 8.822

Review 4.  Magnetic tweezers: a sensitive tool to study DNA and chromatin at the single-molecule level.

Authors:  Jordanka Zlatanova; Sanford H Leuba
Journal:  Biochem Cell Biol       Date:  2003-06       Impact factor: 3.626

5.  A method for the in vitro reconstitution of a defined "30 nm" chromatin fibre containing stoichiometric amounts of the linker histone.

Authors:  Van A T Huynh; Philip J J Robinson; Daniela Rhodes
Journal:  J Mol Biol       Date:  2004-12-07       Impact factor: 5.469

Review 6.  Higher-order structures of chromatin: the elusive 30 nm fiber.

Authors:  David J Tremethick
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

7.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

8.  The elasticity of a single supercoiled DNA molecule.

Authors:  T R Strick; J F Allemand; D Bensimon; A Bensimon; V Croquette
Journal:  Science       Date:  1996-03-29       Impact factor: 47.728

9.  Entropic elasticity of lambda-phage DNA.

Authors:  C Bustamante; J F Marko; E D Siggia; S Smith
Journal:  Science       Date:  1994-09-09       Impact factor: 47.728

10.  Catalytic activity of the yeast SWI/SNF complex on reconstituted nucleosome arrays.

Authors:  C Logie; C L Peterson
Journal:  EMBO J       Date:  1997-11-17       Impact factor: 11.598

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  30 in total

1.  Non-bias-limited tracking of spherical particles, enabling nanometer resolution at low magnification.

Authors:  Marijn T J van Loenhout; Jacob W J Kerssemakers; Iwijn De Vlaminck; Cees Dekker
Journal:  Biophys J       Date:  2012-05-15       Impact factor: 4.033

2.  Quantitative guidelines for force calibration through spectral analysis of magnetic tweezers data.

Authors:  Aartjan J W te Velthuis; Jacob W J Kerssemakers; Jan Lipfert; Nynke H Dekker
Journal:  Biophys J       Date:  2010-08-09       Impact factor: 4.033

3.  Exploring the conformational space of chromatin fibers and their stability by numerical dynamic phase diagrams.

Authors:  René Stehr; Robert Schöpflin; Ramona Ettig; Nick Kepper; Karsten Rippe; Gero Wedemann
Journal:  Biophys J       Date:  2010-03-17       Impact factor: 4.033

4.  Single-molecule force spectroscopy reveals a highly compliant helical folding for the 30-nm chromatin fiber.

Authors:  Maarten Kruithof; Fan-Tso Chien; Andrew Routh; Colin Logie; Daniela Rhodes; John van Noort
Journal:  Nat Struct Mol Biol       Date:  2009-04-19       Impact factor: 15.369

5.  Hidden Markov analysis of nucleosome unwrapping under force.

Authors:  M Kruithof; J van Noort
Journal:  Biophys J       Date:  2009-05-06       Impact factor: 4.033

6.  The effect of internucleosomal interaction on folding of the chromatin fiber.

Authors:  René Stehr; Nick Kepper; Karsten Rippe; Gero Wedemann
Journal:  Biophys J       Date:  2008-07-25       Impact factor: 4.033

7.  Quantitative modeling and optimization of magnetic tweezers.

Authors:  Jan Lipfert; Xiaomin Hao; Nynke H Dekker
Journal:  Biophys J       Date:  2009-06-17       Impact factor: 4.033

8.  Improved high-force magnetic tweezers for stretching and refolding of proteins and short DNA.

Authors:  Hu Chen; Hongxia Fu; Xiaoying Zhu; Peiwen Cong; Fumihiko Nakamura; Jie Yan
Journal:  Biophys J       Date:  2011-01-19       Impact factor: 4.033

9.  Quantitative modeling of forces in electromagnetic tweezers.

Authors:  Alex Bijamov; Fridon Shubitidze; Piercen M Oliver; Dmitri V Vezenov
Journal:  J Appl Phys       Date:  2010-11-18       Impact factor: 2.546

Review 10.  Chromatin fiber dynamics under tension and torsion.

Authors:  Christophe Lavelle; Jean-Marc Victor; Jordanka Zlatanova
Journal:  Int J Mol Sci       Date:  2010-04-12       Impact factor: 5.923

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