Literature DB >> 26914842

Crystal-Structure-Guided Design of Self-Assembling RNA Nanotriangles.

Mark A Boerneke1, Sergey M Dibrov1, Thomas Hermann2,3.   

Abstract

RNA nanotechnology uses RNA structural motifs to build nanosized architectures that assemble through selective base-pair interactions. Herein, we report the crystal-structure-guided design of highly stable RNA nanotriangles that self-assemble cooperatively from short oligonucleotides. The crystal structure of an 81 nucleotide nanotriangle determined at 2.6 Å resolution reveals the so-far smallest circularly closed nanoobject made entirely of double-stranded RNA. The assembly of the nanotriangle architecture involved RNA corner motifs that were derived from ligand-responsive RNA switches, which offer the opportunity to control self-assembly and dissociation.
© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  RNA structures; RNA switch; X-ray diffraction; nanostructures; self-assembly

Mesh:

Substances:

Year:  2016        PMID: 26914842      PMCID: PMC4824544          DOI: 10.1002/anie.201600233

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  20 in total

1.  Multistrand RNA secondary structure prediction and nanostructure design including pseudoknots.

Authors:  Eckart Bindewald; Kirill Afonin; Luc Jaeger; Bruce A Shapiro
Journal:  ACS Nano       Date:  2011-11-17       Impact factor: 15.881

2.  Self-assembling RNA nanorings based on RNAI/II inverse kissing complexes.

Authors:  Wade W Grabow; Paul Zakrevsky; Kirill A Afonin; Arkadiusz Chworos; Bruce A Shapiro; Luc Jaeger
Journal:  Nano Lett       Date:  2011-01-13       Impact factor: 11.189

3.  RNA nanostructures. A single-stranded architecture for cotranscriptional folding of RNA nanostructures.

Authors:  Cody Geary; Paul W K Rothemund; Ebbe S Andersen
Journal:  Science       Date:  2014-08-15       Impact factor: 47.728

4.  Functional conservation despite structural divergence in ligand-responsive RNA switches.

Authors:  Mark A Boerneke; Sergey M Dibrov; Jing Gu; David L Wyles; Thomas Hermann
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-27       Impact factor: 11.205

5.  Synthetic RNA-protein complex shaped like an equilateral triangle.

Authors:  Hirohisa Ohno; Tetsuhiro Kobayashi; Rinko Kabata; Kei Endo; Takuma Iwasa; Shige H Yoshimura; Kunio Takeyasu; Tan Inoue; Hirohide Saito
Journal:  Nat Nanotechnol       Date:  2011-01-16       Impact factor: 39.213

6.  Square-shaped RNA particles from different RNA folds.

Authors:  Isil Severcan; Cody Geary; Erik Verzemnieks; Arkadiusz Chworos; Luc Jaeger
Journal:  Nano Lett       Date:  2009-03       Impact factor: 11.189

7.  Ligand-responsive RNA mechanical switches.

Authors:  Mark A Boerneke; Thomas Hermann
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

8.  Promoting RNA helical stacking via A-minor junctions.

Authors:  Cody Geary; Arkadiusz Chworos; Luc Jaeger
Journal:  Nucleic Acids Res       Date:  2010-09-28       Impact factor: 16.971

9.  Conformational inhibition of the hepatitis C virus internal ribosome entry site RNA.

Authors:  Jerod Parsons; M Paola Castaldi; Sanjay Dutta; Sergey M Dibrov; David L Wyles; Thomas Hermann
Journal:  Nat Chem Biol       Date:  2009-09-20       Impact factor: 15.040

10.  Controlling RNA self-assembly to form filaments.

Authors:  Lorena Nasalean; Stéphanie Baudrey; Neocles B Leontis; Luc Jaeger
Journal:  Nucleic Acids Res       Date:  2006-03-06       Impact factor: 16.971

View more
  20 in total

1.  Hydrophobic Effect from Conjugated Chemicals or Drugs on In Vivo Biodistribution of RNA Nanoparticles.

Authors:  Daniel L Jasinski; Hongran Yin; Zhefeng Li; Peixuan Guo
Journal:  Hum Gene Ther       Date:  2017-10-12       Impact factor: 5.695

2.  One-Pot Production of RNA Nanoparticles via Automated Processing and Self-Assembly.

Authors:  Daniel L Jasinski; Daniel W Binzel; Peixuan Guo
Journal:  ACS Nano       Date:  2019-03-22       Impact factor: 15.881

3.  RNA nanoparticles harboring annexin A2 aptamer can target ovarian cancer for tumor-specific doxorubicin delivery.

Authors:  Fengmei Pi; Hui Zhang; Hui Li; Varatharasa Thiviyanathan; David G Gorenstein; Anil K Sood; Peixuan Guo
Journal:  Nanomedicine       Date:  2016-11-25       Impact factor: 5.307

4.  Use of human peripheral blood mononuclear cells to define immunological properties of nucleic acid nanoparticles.

Authors:  Marina A Dobrovolskaia; Kirill A Afonin
Journal:  Nat Protoc       Date:  2020-10-23       Impact factor: 13.491

Review 5.  Methods for construction and characterization of simple or special multifunctional RNA nanoparticles based on the 3WJ of phi29 DNA packaging motor.

Authors:  Sijin Guo; Xijun Piao; Hui Li; Peixuan Guo
Journal:  Methods       Date:  2018-03-09       Impact factor: 3.608

6.  The Effect of Size and Shape of RNA Nanoparticles on Biodistribution.

Authors:  Daniel L Jasinski; Hui Li; Peixuan Guo
Journal:  Mol Ther       Date:  2017-12-22       Impact factor: 11.454

Review 7.  Tuning the size, shape and structure of RNA nanoparticles for favorable cancer targeting and immunostimulation.

Authors:  Sijin Guo; Congcong Xu; Hongran Yin; Jordan Hill; Fengmei Pi; Peixuan Guo
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2019-08-27

8.  Tuning RNA folding and function through rational design of junction topology.

Authors:  May Daher; Anthony M Mustoe; Alex Morriss-Andrews; Charles L Brooks; Nils G Walter
Journal:  Nucleic Acids Res       Date:  2017-09-19       Impact factor: 16.971

9.  RNA Micelles for the Systemic Delivery of Anti-miRNA for Cancer Targeting and Inhibition without Ligand.

Authors:  Hongran Yin; Hongzhi Wang; Zhefeng Li; Dan Shu; Peixuan Guo
Journal:  ACS Nano       Date:  2018-12-19       Impact factor: 15.881

10.  Construction of RNA nanotubes.

Authors:  Hui Li; Shaoying Wang; Zhouxiang Ji; Congcong Xu; Lyudmila S Shlyakhtenko; Peixuan Guo
Journal:  Nano Res       Date:  2019-07-11       Impact factor: 8.897

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.