Literature DB >> 21239389

Towards a more nuanced understanding of the relationship between sex-biased gene expression and rates of protein-coding sequence evolution.

Richard P Meisel1.   

Abstract

Genes that are differentially expressed between the sexes (sex-biased genes) are among the fastest evolving genes in animal genomes. The majority of sex-biased expression is attributable to genes that are primarily expressed in sex-limited reproductive tissues, and these reproductive genes are often rapidly evolving because of intra- and intersexual selection pressures. Additionally, studies of multiple taxa have revealed that genes with sex-biased expression are also expressed in a limited number of tissues. This is worth noting because narrowly expressed genes are known to evolve faster than broadly expressed genes. Therefore, it is not clear whether sex-biased genes are rapidly evolving because they have sexually dimorphic expression, because they are expressed in sex-limited reproductive tissues, or because they are narrowly expressed. To determine the extend to which other confounding variables can explain the rapid evolution of sex-biased genes, I analyzed the rates of evolution of sex-biased genes in Drosophila melanogaster and Mus musculus in light of tissue-specific measures of expression. I find that genes with sex-biased expression in somatic tissues shared by both sexes are often evolving faster than non-sex-biased genes, but this is best explained by the narrow expression profiles of sex-biased genes. Sex-biased genes in sex-limited tissues in D. melanogaster, however, evolve faster than other narrowly expressed genes. Therefore, the rapid evolution of sex-biased genes is limited only to those genes primarily expressed in sex-limited reproductive tissues.

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Mesh:

Year:  2011        PMID: 21239389      PMCID: PMC3098513          DOI: 10.1093/molbev/msr010

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  48 in total

1.  Highly expressed genes in yeast evolve slowly.

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2.  Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome.

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Journal:  Genetics       Date:  2004-09       Impact factor: 4.562

3.  A shrinkage approach to large-scale covariance matrix estimation and implications for functional genomics.

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4.  Mammalian sperm proteins are rapidly evolving: evidence of positive selection in functionally diverse genes.

Authors:  Dara G Torgerson; Rob J Kulathinal; Rama S Singh
Journal:  Mol Biol Evol       Date:  2002-11       Impact factor: 16.240

5.  Sebida: a database for the functional and evolutionary analysis of genes with sex-biased expression.

Authors:  Florian Gnad; John Parsch
Journal:  Bioinformatics       Date:  2006-07-31       Impact factor: 6.937

6.  Tissue-specific expression and regulation of sexually dimorphic genes in mice.

Authors:  Xia Yang; Eric E Schadt; Susanna Wang; Hui Wang; Arthur P Arnold; Leslie Ingram-Drake; Thomas A Drake; Aldons J Lusis
Journal:  Genome Res       Date:  2006-07-06       Impact factor: 9.043

7.  The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster.

Authors:  W Jin; R M Riley; R D Wolfinger; K P White; G Passador-Gurgel; G Gibson
Journal:  Nat Genet       Date:  2001-12       Impact factor: 38.330

8.  Sex-specific and lineage-specific alternative splicing in primates.

Authors:  Ran Blekhman; John C Marioni; Paul Zumbo; Matthew Stephens; Yoav Gilad
Journal:  Genome Res       Date:  2009-12-15       Impact factor: 9.043

9.  Paucity of genes on the Drosophila X chromosome showing male-biased expression.

Authors:  Michael Parisi; Rachel Nuttall; Daniel Naiman; Gerard Bouffard; James Malley; Justen Andrews; Scott Eastman; Brian Oliver
Journal:  Science       Date:  2003-01-02       Impact factor: 47.728

10.  Gene expression during the life cycle of Drosophila melanogaster.

Authors:  Michelle N Arbeitman; Eileen E M Furlong; Farhad Imam; Eric Johnson; Brian H Null; Bruce S Baker; Mark A Krasnow; Matthew P Scott; Ronald W Davis; Kevin P White
Journal:  Science       Date:  2002-09-27       Impact factor: 47.728

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  70 in total

1.  Rapid Evolution of Ovarian-Biased Genes in the Yellow Fever Mosquito (Aedes aegypti).

Authors:  Carrie A Whittle; Cassandra G Extavour
Journal:  Genetics       Date:  2017-06-19       Impact factor: 4.562

2.  The nutritionally responsive transcriptome of the polyphenic beetle Onthophagus taurus and the importance of sexual dimorphism and body region.

Authors:  Teiya Kijimoto; Emilie C Snell-Rood; Melissa H Pespeni; Guilherme Rocha; Karen Kafadar; Armin P Moczek
Journal:  Proc Biol Sci       Date:  2014-12-22       Impact factor: 5.349

3.  Sexual selection drives evolution and rapid turnover of male gene expression.

Authors:  Peter W Harrison; Alison E Wright; Fabian Zimmer; Rebecca Dean; Stephen H Montgomery; Marie A Pointer; Judith E Mank
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-23       Impact factor: 11.205

4.  Genes Relocated Between Drosophila Chromosome Arms Evolve Under Relaxed Selective Constraints Relative to Non-Relocated Genes.

Authors:  Margaret L I Hart; Ban L Vu; Quinten Bolden; Keith T Chen; Casey L Oakes; Lejla Zoronjic; Richard P Meisel
Journal:  J Mol Evol       Date:  2018-06-21       Impact factor: 2.395

5.  Genetic constraints on microevolutionary divergence of sex-biased gene expression.

Authors:  Scott L Allen; Russell Bonduriansky; Stephen F Chenoweth
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-10-05       Impact factor: 6.237

Review 6.  The evolutionary causes and consequences of sex-biased gene expression.

Authors:  John Parsch; Hans Ellegren
Journal:  Nat Rev Genet       Date:  2013-02       Impact factor: 53.242

7.  Relaxed selection is a precursor to the evolution of phenotypic plasticity.

Authors:  Brendan G Hunt; Lino Ometto; Yannick Wurm; DeWayne Shoemaker; Soojin V Yi; Laurent Keller; Michael A D Goodisman
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-12       Impact factor: 11.205

8.  De Novo assembly of the Manila clam Ruditapes philippinarum transcriptome provides new insights into expression bias, mitochondrial doubly uniparental inheritance and sex determination.

Authors:  Fabrizio Ghiselli; Liliana Milani; Peter L Chang; Dennis Hedgecock; Jonathan P Davis; Sergey V Nuzhdin; Marco Passamonti
Journal:  Mol Biol Evol       Date:  2011-10-05       Impact factor: 16.240

9.  Accelerated evolution of morph-biased genes in pea aphids.

Authors:  Swapna R Purandare; Ryan D Bickel; Julie Jaquiery; Claude Rispe; Jennifer A Brisson
Journal:  Mol Biol Evol       Date:  2014-04-26       Impact factor: 16.240

Review 10.  Spermatogenesis and the Evolution of Mammalian Sex Chromosomes.

Authors:  Erica L Larson; Emily E K Kopania; Jeffrey M Good
Journal:  Trends Genet       Date:  2018-08-01       Impact factor: 11.639

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