Literature DB >> 29926120

Genes Relocated Between Drosophila Chromosome Arms Evolve Under Relaxed Selective Constraints Relative to Non-Relocated Genes.

Margaret L I Hart1,2, Ban L Vu1,3, Quinten Bolden1,4, Keith T Chen1,5, Casey L Oakes1,6, Lejla Zoronjic1,7, Richard P Meisel8.   

Abstract

Gene duplication creates a second copy of a gene either in tandem to the ancestral locus or dispersed to another chromosomal location. When the ancestral copy of a dispersed duplicate is lost from the genome, it creates the appearance that the gene was "relocated" from the ancestral locus to the derived location. Gene relocations may be as common as canonical dispersed duplications in which both the ancestral and derived copies are retained. Relocated genes appear to be under more selective constraints than the derived copies of canonical duplications, and they are possibly as conserved as single-copy non-relocated genes. To test this hypothesis, we combined comparative genomics, population genetics, gene expression, and functional analyses to assess the selection pressures acting on relocated, duplicated, and non-relocated single-copy genes in Drosophila genomes. We find that relocated genes evolve faster than single-copy non-relocated genes, and there is no evidence that this faster evolution is driven by positive selection. In addition, relocated genes are less essential for viability and male fertility than single-copy non-relocated genes, suggesting that relocated genes evolve fast because of relaxed selective constraints. However, relocated genes evolve slower than the derived copies of canonical dispersed duplicated genes. We therefore conclude that relocated genes are under more selective constraints than canonical duplicates, but are not as conserved as single-copy non-relocated genes.

Entities:  

Keywords:  Gene duplication; Gene expression; Gene relocation; RNAi; Selective constraints

Mesh:

Year:  2018        PMID: 29926120     DOI: 10.1007/s00239-018-9849-5

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  75 in total

Review 1.  Preservation of duplicate genes by complementary, degenerative mutations.

Authors:  A Force; M Lynch; F B Pickett; A Amores; Y L Yan; J Postlethwait
Journal:  Genetics       Date:  1999-04       Impact factor: 4.562

Review 2.  Sexual antagonism and X inactivation--the SAXI hypothesis.

Authors:  Chung I Wu; Eugene Yujun Xu
Journal:  Trends Genet       Date:  2003-05       Impact factor: 11.639

3.  Escape from adaptive conflict after duplication in an anthocyanin pathway gene.

Authors:  David L Des Marais; Mark D Rausher
Journal:  Nature       Date:  2008-06-25       Impact factor: 49.962

4.  PopDrowser: the Population Drosophila Browser.

Authors:  Miquel Ràmia; Pablo Librado; Sònia Casillas; Julio Rozas; Antonio Barbadilla
Journal:  Bioinformatics       Date:  2011-12-15       Impact factor: 6.937

5.  Dntf-2r, a young Drosophila retroposed gene with specific male expression under positive Darwinian selection.

Authors:  Esther Betrán; Manyuan Long
Journal:  Genetics       Date:  2003-07       Impact factor: 4.562

6.  Paucity of genes on the Drosophila X chromosome showing male-biased expression.

Authors:  Michael Parisi; Rachel Nuttall; Daniel Naiman; Gerard Bouffard; James Malley; Justen Andrews; Scott Eastman; Brian Oliver
Journal:  Science       Date:  2003-01-02       Impact factor: 47.728

7.  Adaptive evolution of young gene duplicates in mammals.

Authors:  Mira V Han; Jeffery P Demuth; Casey L McGrath; Claudio Casola; Matthew W Hahn
Journal:  Genome Res       Date:  2009-05       Impact factor: 9.043

8.  The Drosophila melanogaster Genetic Reference Panel.

Authors:  Trudy F C Mackay; Stephen Richards; Eric A Stone; Antonio Barbadilla; Julien F Ayroles; Dianhui Zhu; Sònia Casillas; Yi Han; Michael M Magwire; Julie M Cridland; Mark F Richardson; Robert R H Anholt; Maite Barrón; Crystal Bess; Kerstin Petra Blankenburg; Mary Anna Carbone; David Castellano; Lesley Chaboub; Laura Duncan; Zeke Harris; Mehwish Javaid; Joy Christina Jayaseelan; Shalini N Jhangiani; Katherine W Jordan; Fremiet Lara; Faye Lawrence; Sandra L Lee; Pablo Librado; Raquel S Linheiro; Richard F Lyman; Aaron J Mackey; Mala Munidasa; Donna Marie Muzny; Lynne Nazareth; Irene Newsham; Lora Perales; Ling-Ling Pu; Carson Qu; Miquel Ràmia; Jeffrey G Reid; Stephanie M Rollmann; Julio Rozas; Nehad Saada; Lavanya Turlapati; Kim C Worley; Yuan-Qing Wu; Akihiko Yamamoto; Yiming Zhu; Casey M Bergman; Kevin R Thornton; David Mittelman; Richard A Gibbs
Journal:  Nature       Date:  2012-02-08       Impact factor: 49.962

9.  Gene family evolution across 12 Drosophila genomes.

Authors:  Matthew W Hahn; Mira V Han; Sang-Gook Han
Journal:  PLoS Genet       Date:  2007-11       Impact factor: 5.917

10.  Chromosomal gene movements reflect the recent origin and biology of therian sex chromosomes.

Authors:  Lukasz Potrzebowski; Nicolas Vinckenbosch; Ana Claudia Marques; Frédéric Chalmel; Bernard Jégou; Henrik Kaessmann
Journal:  PLoS Biol       Date:  2008-04-01       Impact factor: 8.029

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