Literature DB >> 16882652

Sebida: a database for the functional and evolutionary analysis of genes with sex-biased expression.

Florian Gnad1, John Parsch.   

Abstract

UNLABELLED: We describe Sebida, a database of genes with sex-biased expression. The database integrates results from multiple, independent microarray studies comparing male and female gene expression in Drosophila melanogaster, Drosophila simulans and Anopheles gambiae. Sebida uses standard nomenclature, which allows individual genes to be compared across different microarray platforms and to be queried by gene name, symbol, or annotation number. In addition to ratios of male/female expression for each gene, Sebida also contains information useful for evolutionary studies, such as local recombination rate, degree of codon bias and interspecific divergence at synonymous and non-synonymous sites. AVAILABILITY: Sebida can be accessed at http://www.sebida.de

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Year:  2006        PMID: 16882652     DOI: 10.1093/bioinformatics/btl422

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  67 in total

1.  Reshaping of global gene expression networks and sex-biased gene expression by integration of a young gene.

Authors:  Sidi Chen; Xiaochun Ni; Benjamin H Krinsky; Yong E Zhang; Maria D Vibranovski; Kevin P White; Manyuan Long
Journal:  EMBO J       Date:  2012-04-27       Impact factor: 11.598

2.  Transitions between male and female heterogamety caused by sex-antagonistic selection.

Authors:  G Sander van Doorn; Mark Kirkpatrick
Journal:  Genetics       Date:  2010-07-13       Impact factor: 4.562

3.  'Escaping' the X chromosome leads to increased gene expression in the male germline of Drosophila melanogaster.

Authors:  C Kemkemer; A Catalán; J Parsch
Journal:  Heredity (Edinb)       Date:  2013-09-11       Impact factor: 3.821

4.  Sex linkage, sex-specific selection, and the role of recombination in the evolution of sexually dimorphic gene expression.

Authors:  Tim Connallon; Andrew G Clark
Journal:  Evolution       Date:  2010-11-03       Impact factor: 3.694

5.  Effects of X-linkage and sex-biased gene expression on the rate of adaptive protein evolution in Drosophila.

Authors:  John F Baines; Stanley A Sawyer; Daniel L Hartl; John Parsch
Journal:  Mol Biol Evol       Date:  2008-05-13       Impact factor: 16.240

6.  Sex-specific effects of cis-regulatory variants in Drosophila melanogaster.

Authors:  Joseph D Coolon; William Webb; Patricia J Wittkopp
Journal:  Genetics       Date:  2013-10-04       Impact factor: 4.562

7.  Stage-specific expression profiling of Drosophila spermatogenesis suggests that meiotic sex chromosome inactivation drives genomic relocation of testis-expressed genes.

Authors:  Maria D Vibranovski; Hedibert F Lopes; Timothy L Karr; Manyuan Long
Journal:  PLoS Genet       Date:  2009-11-20       Impact factor: 5.917

8.  Gene expression during Drosophila melanogaster egg development before and after reproductive diapause.

Authors:  Dean A Baker; Steven Russell
Journal:  BMC Genomics       Date:  2009-05-24       Impact factor: 3.969

9.  Molecular evolution of sex-biased genes in the Drosophila ananassae subgroup.

Authors:  Sonja Grath; John F Baines; John Parsch
Journal:  BMC Evol Biol       Date:  2009-12-16       Impact factor: 3.260

10.  The transcriptional response of Drosophila melanogaster to infection with the sigma virus (Rhabdoviridae).

Authors:  Jennifer Carpenter; Stephan Hutter; John F Baines; Julia Roller; Sarah S Saminadin-Peter; John Parsch; Francis M Jiggins
Journal:  PLoS One       Date:  2009-08-31       Impact factor: 3.240

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