Literature DB >> 21204120

Extensions of net reclassification improvement calculations to measure usefulness of new biomarkers.

Michael J Pencina1, Ralph B D'Agostino, Ewout W Steyerberg.   

Abstract

Appropriate quantification of added usefulness offered by new markers included in risk prediction algorithms is a problem of active research and debate. Standard methods, including statistical significance and c statistic are useful but not sufficient. Net reclassification improvement (NRI) offers a simple intuitive way of quantifying improvement offered by new markers and has been gaining popularity among researchers. However, several aspects of the NRI have not been studied in sufficient detail. In this paper we propose a prospective formulation for the NRI which offers immediate application to survival and competing risk data as well as allows for easy weighting with observed or perceived costs. We address the issue of the number and choice of categories and their impact on NRI. We contrast category-based NRI with one which is category-free and conclude that NRIs cannot be compared across studies unless they are defined in the same manner. We discuss the impact of differing event rates when models are applied to different samples or definitions of events and durations of follow-up vary between studies. We also show how NRI can be applied to case-control data. The concepts presented in the paper are illustrated in a Framingham Heart Study example. In conclusion, NRI can be readily calculated for survival, competing risk, and case-control data, is more objective and comparable across studies using the category-free version, and can include relative costs for classifications. We recommend that researchers clearly define and justify the choices they make when choosing NRI for their application.
Copyright © 2010 John Wiley & Sons, Ltd.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 21204120      PMCID: PMC3341973          DOI: 10.1002/sim.4085

Source DB:  PubMed          Journal:  Stat Med        ISSN: 0277-6715            Impact factor:   2.373


  26 in total

1.  The need for reorientation toward cost-effective prediction: comments on 'Evaluating the added predictive ability of a new marker: From area under the ROC curve to reclassification and beyond' by M. J. Pencina et al., Statistics in Medicine (DOI: 10.1002/sim.2929).

Authors:  Sander Greenland
Journal:  Stat Med       Date:  2008-01-30       Impact factor: 2.373

2.  The numerical measure of the success of predictions.

Authors:  C S Peirce
Journal:  Science       Date:  1884-11-14       Impact factor: 47.728

3.  Prediction of coronary heart disease using risk factor categories.

Authors:  P W Wilson; R B D'Agostino; D Levy; A M Belanger; H Silbershatz; W B Kannel
Journal:  Circulation       Date:  1998-05-12       Impact factor: 29.690

4.  Confidence interval estimates of an index of quality performance based on logistic regression models.

Authors:  D W Hosmer; S Lemeshow
Journal:  Stat Med       Date:  1995-10-15       Impact factor: 2.373

5.  Use and misuse of the receiver operating characteristic curve in risk prediction.

Authors:  Nancy R Cook
Journal:  Circulation       Date:  2007-02-20       Impact factor: 29.690

6.  Projecting individualized probabilities of developing breast cancer for white females who are being examined annually.

Authors:  M H Gail; L A Brinton; D P Byar; D K Corle; S B Green; C Schairer; J J Mulvihill
Journal:  J Natl Cancer Inst       Date:  1989-12-20       Impact factor: 13.506

7.  Decision curve analysis: a novel method for evaluating prediction models.

Authors:  Andrew J Vickers; Elena B Elkin
Journal:  Med Decis Making       Date:  2006 Nov-Dec       Impact factor: 2.583

8.  Assessing the performance of prediction models: a framework for traditional and novel measures.

Authors:  Ewout W Steyerberg; Andrew J Vickers; Nancy R Cook; Thomas Gerds; Mithat Gonen; Nancy Obuchowski; Michael J Pencina; Michael W Kattan
Journal:  Epidemiology       Date:  2010-01       Impact factor: 4.822

9.  General cardiovascular risk profile for use in primary care: the Framingham Heart Study.

Authors:  Ralph B D'Agostino; Ramachandran S Vasan; Michael J Pencina; Philip A Wolf; Mark Cobain; Joseph M Massaro; William B Kannel
Journal:  Circulation       Date:  2008-01-22       Impact factor: 29.690

10.  Advances in measuring the effect of individual predictors of cardiovascular risk: the role of reclassification measures.

Authors:  Nancy R Cook; Paul M Ridker
Journal:  Ann Intern Med       Date:  2009-06-02       Impact factor: 25.391

View more
  856 in total

1.  Novel metrics for evaluating improvement in discrimination: net reclassification and integrated discrimination improvement for normal variables and nested models.

Authors:  Michael J Pencina; Ralph B D'Agostino; Olga V Demler
Journal:  Stat Med       Date:  2011-12-07       Impact factor: 2.373

2.  Use of carotid intima-media thickness regression to guide therapy and management of cardiac risks.

Authors:  P Costanzo; J G Cleland; S L Atkin; E Vassallo; P Perrone-Filardi
Journal:  Curr Treat Options Cardiovasc Med       Date:  2012-02

3.  Risk prediction measures for case-cohort and nested case-control designs: an application to cardiovascular disease.

Authors:  Andrea Ganna; Marie Reilly; Ulf de Faire; Nancy Pedersen; Patrik Magnusson; Erik Ingelsson
Journal:  Am J Epidemiol       Date:  2012-03-06       Impact factor: 4.897

4.  Predictors and incremental prognostic value of left ventricular mechanical dyssynchrony response during stress-gated positron emission tomography in patients with ischemic cardiomyopathy.

Authors:  Wael AlJaroudi; M Chadi Alraies; Venu Menon; Richard C Brunken; Manuel D Cerqueira; Wael A Jaber
Journal:  J Nucl Cardiol       Date:  2012-06-13       Impact factor: 5.952

5.  A unified inference procedure for a class of measures to assess improvement in risk prediction systems with survival data.

Authors:  Hajime Uno; Lu Tian; Tianxi Cai; Isaac S Kohane; L J Wei
Journal:  Stat Med       Date:  2012-10-05       Impact factor: 2.373

6.  Dynamic data during hypotensive episode improves mortality predictions among patients with sepsis and hypotension.

Authors:  Louis Mayaud; Peggy S Lai; Gari D Clifford; Lionel Tarassenko; Leo Anthony Celi; Djillali Annane
Journal:  Crit Care Med       Date:  2013-04       Impact factor: 7.598

7.  The systolic blood pressure difference between arms and cardiovascular disease in the Framingham Heart Study.

Authors:  Ido Weinberg; Philimon Gona; Christopher J O'Donnell; Michael R Jaff; Joanne M Murabito
Journal:  Am J Med       Date:  2013-11-25       Impact factor: 4.965

Review 8.  Screening low-risk individuals for coronary artery disease.

Authors:  Chintan S Desai; Roger S Blumenthal; Philip Greenland
Journal:  Curr Atheroscler Rep       Date:  2014-04       Impact factor: 5.113

9.  Coronary risk assessment among intermediate risk patients using a clinical and biomarker based algorithm developed and validated in two population cohorts.

Authors:  D S Cross; C A McCarty; E Hytopoulos; M Beggs; N Nolan; D S Harrington; T Hastie; R Tibshirani; R P Tracy; B M Psaty; R McClelland; P S Tsao; T Quertermous
Journal:  Curr Med Res Opin       Date:  2012-11       Impact factor: 2.580

10.  Predicting stroke through genetic risk functions: the CHARGE Risk Score Project.

Authors:  Carla A Ibrahim-Verbaas; Myriam Fornage; Joshua C Bis; Seung Hoan Choi; Bruce M Psaty; James B Meigs; Madhu Rao; Mike Nalls; Joao D Fontes; Christopher J O'Donnell; Sekar Kathiresan; Georg B Ehret; Caroline S Fox; Rainer Malik; Martin Dichgans; Helena Schmidt; Jari Lahti; Susan R Heckbert; Thomas Lumley; Kenneth Rice; Jerome I Rotter; Kent D Taylor; Aaron R Folsom; Eric Boerwinkle; Wayne D Rosamond; Eyal Shahar; Rebecca F Gottesman; Peter J Koudstaal; Najaf Amin; Renske G Wieberdink; Abbas Dehghan; Albert Hofman; André G Uitterlinden; Anita L Destefano; Stephanie Debette; Luting Xue; Alexa Beiser; Philip A Wolf; Charles Decarli; M Arfan Ikram; Sudha Seshadri; Thomas H Mosley; W T Longstreth; Cornelia M van Duijn; Lenore J Launer
Journal:  Stroke       Date:  2014-01-16       Impact factor: 7.914

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.