| Literature DB >> 21578006 |
Sohail Saeed, Naghmana Rashid, Rizwan Hussain, Peter G Jones.
Abstract
The title compound, C(12)H(9)BrN(2)OS(2), consists of two planar parts, viz. the thio-phene ring including all substituents (r.m.s. deviation 0.007 Å) and the benzene ring including the respective substituents as well as the thione group (r.m.s. deviation 0.05 Å). The inter-planar angle is 18.84 (6)°. An intra-molecular C(phen-yl)-N-H⋯OC hydrogen bond is observed. The three-dimensional packing involves three types of inter-actions, viz. N-H⋯S, C-H⋯S (× 2) and Br⋯S [3.6924 (6) Å].Entities:
Year: 2009 PMID: 21578006 PMCID: PMC2970465 DOI: 10.1107/S1600536809038537
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H9BrN2OS2 | |
| Monoclinic, | Melting point: 389 K |
| Hall symbol: -P 2yn | Cu |
| Cell parameters from 12273 reflections | |
| θ = 3.4–75.7° | |
| µ = 7.12 mm−1 | |
| β = 90.412 (5)° | |
| Needle, colourless | |
| 0.15 × 0.05 × 0.02 mm |
| Oxford Diffraction Xcalibur Nova A diffractometer | 2712 independent reflections |
| Radiation source: Nova (Cu) X-ray Source | 2438 reflections with |
| mirror | |
| Detector resolution: 10.3543 pixels mm-1 | θmax = 75.9°, θmin = 3.9° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 20285 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2712 reflections | (Δ/σ)max = 0.002 |
| 171 parameters | Δρmax = 0.42 e Å−3 |
| 0 restraints | Δρmin = −0.36 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes.Short contact:3.6924 (0.0006) S1 - Br_$3 165.89 (0.07) C1 - S1 - Br_$3 90.51 (0.06) S1 -
Br_$3 - C10_$3 Operator for generating equivalent atoms: $3 - |
| Refinement. Refinement of |
| Br | 0.629471 (15) | 0.87392 (5) | 0.136702 (8) | 0.02773 (9) | |
| S1 | 0.12627 (4) | −0.47575 (13) | 0.42493 (2) | 0.03066 (13) | |
| S2 | 0.57481 (4) | 0.15778 (13) | 0.42693 (2) | 0.02881 (13) | |
| O | 0.27346 (11) | −0.1628 (4) | 0.34866 (6) | 0.0306 (3) | |
| N1 | 0.40397 (12) | −0.1458 (4) | 0.41634 (7) | 0.0213 (3) | |
| H01 | 0.4194 (19) | −0.180 (6) | 0.4521 (12) | 0.031 (7)* | |
| N2 | 0.44284 (13) | 0.1420 (4) | 0.33512 (7) | 0.0238 (4) | |
| H02 | 0.385 (2) | 0.075 (6) | 0.3245 (11) | 0.032 (7)* | |
| C1 | 0.25426 (14) | −0.4373 (5) | 0.43690 (8) | 0.0228 (4) | |
| C2 | 0.28750 (14) | −0.6036 (4) | 0.48600 (8) | 0.0191 (4) | |
| H2 | 0.3558 | −0.6113 | 0.4998 | 0.023* | |
| C3 | 0.20512 (17) | −0.7586 (5) | 0.51212 (9) | 0.0303 (4) | |
| H3 | 0.2122 | −0.8857 | 0.5457 | 0.036* | |
| C4 | 0.11538 (17) | −0.7072 (5) | 0.48445 (11) | 0.0340 (5) | |
| H4 | 0.0527 | −0.7916 | 0.4969 | 0.041* | |
| C5 | 0.31026 (14) | −0.2406 (5) | 0.39652 (8) | 0.0226 (4) | |
| C6 | 0.47172 (14) | 0.0541 (5) | 0.38914 (8) | 0.0215 (4) | |
| C7 | 0.49109 (15) | 0.3288 (4) | 0.29299 (8) | 0.0213 (4) | |
| C8 | 0.43466 (15) | 0.3754 (5) | 0.24114 (9) | 0.0251 (4) | |
| H8 | 0.3683 | 0.2922 | 0.2375 | 0.030* | |
| C9 | 0.47486 (15) | 0.5415 (5) | 0.19539 (9) | 0.0268 (4) | |
| H9 | 0.4365 | 0.5732 | 0.1603 | 0.032* | |
| C10 | 0.57114 (15) | 0.6608 (4) | 0.20115 (8) | 0.0228 (4) | |
| C11 | 0.62707 (15) | 0.6225 (5) | 0.25232 (9) | 0.0279 (4) | |
| H11 | 0.6928 | 0.7100 | 0.2559 | 0.033* | |
| C12 | 0.58713 (15) | 0.4557 (5) | 0.29867 (9) | 0.0293 (4) | |
| H12 | 0.6254 | 0.4288 | 0.3340 | 0.035* |
| Br | 0.02733 (13) | 0.03447 (14) | 0.02145 (12) | 0.00217 (8) | 0.00351 (8) | 0.00748 (8) |
| S1 | 0.0204 (2) | 0.0323 (3) | 0.0393 (3) | −0.0031 (2) | −0.00143 (19) | −0.0057 (2) |
| S2 | 0.0253 (2) | 0.0430 (3) | 0.0181 (2) | −0.0118 (2) | −0.00757 (18) | 0.00732 (19) |
| O | 0.0251 (7) | 0.0443 (9) | 0.0222 (7) | −0.0074 (6) | −0.0074 (6) | 0.0054 (6) |
| N1 | 0.0211 (8) | 0.0283 (9) | 0.0145 (8) | −0.0019 (6) | −0.0039 (6) | 0.0029 (6) |
| N2 | 0.0208 (8) | 0.0319 (9) | 0.0187 (8) | −0.0042 (7) | −0.0045 (6) | 0.0038 (7) |
| C1 | 0.0193 (8) | 0.0278 (10) | 0.0212 (9) | −0.0023 (8) | 0.0005 (7) | −0.0055 (8) |
| C2 | 0.0217 (9) | 0.0198 (9) | 0.0159 (8) | −0.0038 (7) | 0.0010 (7) | −0.0037 (7) |
| C3 | 0.0391 (11) | 0.0255 (10) | 0.0266 (10) | −0.0025 (9) | 0.0095 (8) | −0.0036 (9) |
| C4 | 0.0286 (10) | 0.0260 (11) | 0.0477 (13) | −0.0049 (9) | 0.0173 (9) | −0.0085 (10) |
| C5 | 0.0207 (8) | 0.0272 (10) | 0.0199 (9) | −0.0008 (8) | −0.0020 (7) | −0.0027 (8) |
| C6 | 0.0213 (8) | 0.0258 (10) | 0.0174 (8) | 0.0004 (7) | −0.0024 (7) | 0.0002 (7) |
| C7 | 0.0230 (9) | 0.0247 (10) | 0.0162 (8) | 0.0002 (7) | −0.0009 (7) | 0.0014 (7) |
| C8 | 0.0223 (9) | 0.0320 (11) | 0.0210 (9) | −0.0031 (8) | −0.0047 (7) | 0.0021 (8) |
| C9 | 0.0290 (10) | 0.0331 (11) | 0.0184 (9) | 0.0002 (9) | −0.0053 (7) | 0.0041 (8) |
| C10 | 0.0264 (9) | 0.0232 (10) | 0.0190 (9) | 0.0034 (7) | 0.0027 (7) | 0.0035 (7) |
| C11 | 0.0222 (9) | 0.0376 (12) | 0.0238 (10) | −0.0027 (8) | −0.0029 (8) | 0.0053 (8) |
| C12 | 0.0253 (10) | 0.0411 (12) | 0.0212 (9) | −0.0027 (9) | −0.0052 (7) | 0.0077 (9) |
| Br—C10 | 1.9050 (19) | C7—C12 | 1.387 (3) |
| S1—C4 | 1.701 (3) | C7—C8 | 1.401 (3) |
| S1—C1 | 1.7111 (19) | C8—C9 | 1.379 (3) |
| S2—C6 | 1.6629 (19) | C9—C10 | 1.377 (3) |
| O—C5 | 1.234 (2) | C10—C11 | 1.380 (3) |
| N1—C5 | 1.374 (2) | C11—C12 | 1.390 (3) |
| N1—C6 | 1.402 (3) | N1—H01 | 0.85 (3) |
| N2—C6 | 1.338 (2) | N2—H02 | 0.85 (3) |
| N2—C7 | 1.417 (3) | C2—H2 | 0.9500 |
| C1—C2 | 1.402 (3) | C3—H3 | 0.9500 |
| C1—C5 | 1.465 (3) | C4—H4 | 0.9500 |
| C2—C3 | 1.415 (3) | C8—H8 | 0.9500 |
| C3—C4 | 1.352 (3) | C9—H9 | 0.9500 |
| C4—S1—C1 | 91.28 (10) | C11—C10—Br | 119.39 (15) |
| C5—N1—C6 | 128.33 (16) | C10—C11—C12 | 119.92 (19) |
| C6—N2—C7 | 131.42 (17) | C7—C12—C11 | 119.56 (18) |
| C2—C1—C5 | 130.75 (17) | C5—N1—H01 | 117.8 (18) |
| C2—C1—S1 | 111.98 (14) | C6—N1—H01 | 112.6 (18) |
| C5—C1—S1 | 117.26 (14) | C6—N2—H02 | 113.9 (18) |
| C1—C2—C3 | 110.59 (17) | C7—N2—H02 | 114.7 (18) |
| C4—C3—C2 | 113.1 (2) | C1—C2—H2 | 124.7 |
| C3—C4—S1 | 113.04 (16) | C3—C2—H2 | 124.7 |
| O—C5—N1 | 123.18 (18) | C4—C3—H3 | 123.5 |
| O—C5—C1 | 121.29 (17) | C2—C3—H3 | 123.5 |
| N1—C5—C1 | 115.51 (16) | C3—C4—H4 | 123.5 |
| N2—C6—N1 | 114.16 (16) | S1—C4—H4 | 123.5 |
| N2—C6—S2 | 128.06 (16) | C9—C8—H8 | 119.8 |
| N1—C6—S2 | 117.77 (13) | C7—C8—H8 | 119.8 |
| C12—C7—C8 | 119.64 (18) | C10—C9—H9 | 120.3 |
| C12—C7—N2 | 125.84 (17) | C8—C9—H9 | 120.3 |
| C8—C7—N2 | 114.50 (17) | C10—C11—H11 | 120.0 |
| C9—C8—C7 | 120.39 (18) | C12—C11—H11 | 120.0 |
| C10—C9—C8 | 119.34 (18) | C7—C12—H12 | 120.2 |
| C9—C10—C11 | 121.11 (18) | C11—C12—H12 | 120.2 |
| C9—C10—Br | 119.48 (15) | ||
| C4—S1—C1—C2 | 0.46 (16) | C5—N1—C6—N2 | −5.5 (3) |
| C4—S1—C1—C5 | −178.78 (16) | C5—N1—C6—S2 | 173.38 (16) |
| C5—C1—C2—C3 | 179.2 (2) | C6—N2—C7—C12 | 3.5 (4) |
| S1—C1—C2—C3 | 0.1 (2) | C6—N2—C7—C8 | −178.4 (2) |
| C1—C2—C3—C4 | −0.8 (3) | C12—C7—C8—C9 | 1.3 (3) |
| C2—C3—C4—S1 | 1.1 (2) | N2—C7—C8—C9 | −177.00 (19) |
| C1—S1—C4—C3 | −0.92 (18) | C7—C8—C9—C10 | 0.1 (3) |
| C6—N1—C5—O | 2.2 (3) | C8—C9—C10—C11 | −1.4 (3) |
| C6—N1—C5—C1 | −176.30 (18) | C8—C9—C10—Br | 177.04 (16) |
| C2—C1—C5—O | 164.5 (2) | C9—C10—C11—C12 | 1.4 (3) |
| S1—C1—C5—O | −16.4 (3) | Br—C10—C11—C12 | −177.09 (17) |
| C2—C1—C5—N1 | −17.0 (3) | C8—C7—C12—C11 | −1.3 (3) |
| S1—C1—C5—N1 | 162.10 (14) | N2—C7—C12—C11 | 176.8 (2) |
| C7—N2—C6—N1 | −177.11 (19) | C10—C11—C12—C7 | 0.0 (3) |
| C7—N2—C6—S2 | 4.2 (3) |
| H··· | ||||
| N1—H01···S2i | 0.85 (3) | 2.74 (3) | 3.5625 (16) | 163 (2) |
| N2—H02···O | 0.85 (3) | 1.89 (3) | 2.624 (2) | 144 (2) |
| C9—H9···S1ii | 0.95 | 2.89 | 3.704 (2) | 144 |
| C2—H2···S2i | 0.95 | 2.76 | 3.3193 (18) | 119 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H01⋯S2i | 0.85 (3) | 2.74 (3) | 3.5625 (16) | 163 (2) |
| N2—H02⋯O | 0.85 (3) | 1.89 (3) | 2.624 (2) | 144 (2) |
| C9—H9⋯S1ii | 0.95 | 2.89 | 3.704 (2) | 144 |
| C2—H2⋯S2i | 0.95 | 2.76 | 3.3193 (18) | 119 |
Symmetry codes: (i) ; (ii) .