Literature DB >> 21578006

1-(4-Bromo-phen-yl)-3-(2-thienylcarbon-yl)thio-urea.

Sohail Saeed, Naghmana Rashid, Rizwan Hussain, Peter G Jones.   

Abstract

The title compound, C(12)H(9)BrN(2)OS(2), consists of two planar parts, viz. the thio-phene ring including all substituents (r.m.s. deviation 0.007 Å) and the benzene ring including the respective substituents as well as the thione group (r.m.s. deviation 0.05 Å). The inter-planar angle is 18.84 (6)°. An intra-molecular C(phen-yl)-N-H⋯OC hydrogen bond is observed. The three-dimensional packing involves three types of inter-actions, viz. N-H⋯S, C-H⋯S (× 2) and Br⋯S [3.6924 (6) Å].

Entities:  

Year:  2009        PMID: 21578006      PMCID: PMC2970465          DOI: 10.1107/S1600536809038537

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the chemistry of thio­urea derivatives, see: Choi et al. (2008 ▶); Jones et al. (2008 ▶); Su et al. (2006 ▶). For related structures, see: Saeed et al. (2008a ▶,b ▶,c ▶); Yunus et al. (2008 ▶). For the cytotoxicity and genotoxicity of anticancer drugs to normal cells in cancer therapy, see: Aydemir & Bilaloglu (2003 ▶).

Experimental

Crystal data

C12H9BrN2OS2 M = 341.24 Monoclinic, a = 13.1483 (6) Å b = 4.4263 (2) Å c = 22.671 (1) Å β = 90.412 (5)° V = 1319.4 (1) Å3 Z = 4 Cu Kα radiation μ = 7.12 mm−1 T = 100 K 0.15 × 0.05 × 0.02 mm

Data collection

Oxford Diffraction Xcalibur Nova A diffractometer Absorption correction: multi-scan (CrysAlis Pro; Oxford Diffraction, 2009 ▶) T min = 0.558, T max = 1.000 20285 measured reflections 2712 independent reflections 2438 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.067 S = 1.06 2712 reflections 171 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.42 e Å−3 Δρmin = −0.36 e Å−3 Data collection: CrysAlis Pro (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis Pro; data reduction: CrysAlis Pro; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP (Siemens, 1994 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809038537/im2139sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809038537/im2139Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H9BrN2OS2F(000) = 680
Mr = 341.24Dx = 1.718 Mg m3
Monoclinic, P21/nMelting point: 389 K
Hall symbol: -P 2ynCu Kα radiation, λ = 1.54184 Å
a = 13.1483 (6) ÅCell parameters from 12273 reflections
b = 4.4263 (2) Åθ = 3.4–75.7°
c = 22.671 (1) ŵ = 7.12 mm1
β = 90.412 (5)°T = 100 K
V = 1319.4 (1) Å3Needle, colourless
Z = 40.15 × 0.05 × 0.02 mm
Oxford Diffraction Xcalibur Nova A diffractometer2712 independent reflections
Radiation source: Nova (Cu) X-ray Source2438 reflections with I > 2σ(I)
mirrorRint = 0.040
Detector resolution: 10.3543 pixels mm-1θmax = 75.9°, θmin = 3.9°
ω scansh = −16→16
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −5→4
Tmin = 0.558, Tmax = 1.000l = −28→27
20285 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.025Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.067H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0399P)2 + 0.686P] where P = (Fo2 + 2Fc2)/3
2712 reflections(Δ/σ)max = 0.002
171 parametersΔρmax = 0.42 e Å3
0 restraintsΔρmin = −0.36 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.Short contact:3.6924 (0.0006) S1 - Br_$3 165.89 (0.07) C1 - S1 - Br_$3 90.51 (0.06) S1 - Br_$3 - C10_$3 Operator for generating equivalent atoms: $3 - x + 1/2, y - 3/2, -z + 1/2Least-squares planes (x,y,z in crystal coordinates) and deviations from them (* indicates atom used to define plane)- 2.2923 (0.0090) x + 3.4843 (0.0018) y + 13.4394 (0.0126) z = 3.7714 (0.0071)* -0.0064 (0.0017) C1 * -0.0022 (0.0013) C2 * -0.0022 (0.0014) C3 * 0.0106 (0.0014) C4 * -0.0078 (0.0010) S1 * 0.0079 (0.0011) C5Rms deviation of fitted atoms = 0.0069- 5.4364 (0.0073) x + 3.6780 (0.0010) y + 8.5062 (0.0060) z = 1.0213 (0.0056)Angle to previous plane (with approximate e.s.d.) = 18.84 (0.06)* -0.0768 (0.0015) C6 * 0.0657 (0.0011) S2 * 0.0104 (0.0018) C7 * 0.0477 (0.0017) C8 * 0.0508 (0.0017) C9 * 0.0153 (0.0017) C10 * 0.0055 (0.0018) C11 * 0.0033 (0.0020) C12 * -0.0663 (0.0010) Br * -0.0558 (0.0015) N2 - 0.2202 (0.0028) C5 - 0.1410 (0.0028) O -0.2122 (0.0021) N1Rms deviation of fitted atoms = 0.0479
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br0.629471 (15)0.87392 (5)0.136702 (8)0.02773 (9)
S10.12627 (4)−0.47575 (13)0.42493 (2)0.03066 (13)
S20.57481 (4)0.15778 (13)0.42693 (2)0.02881 (13)
O0.27346 (11)−0.1628 (4)0.34866 (6)0.0306 (3)
N10.40397 (12)−0.1458 (4)0.41634 (7)0.0213 (3)
H010.4194 (19)−0.180 (6)0.4521 (12)0.031 (7)*
N20.44284 (13)0.1420 (4)0.33512 (7)0.0238 (4)
H020.385 (2)0.075 (6)0.3245 (11)0.032 (7)*
C10.25426 (14)−0.4373 (5)0.43690 (8)0.0228 (4)
C20.28750 (14)−0.6036 (4)0.48600 (8)0.0191 (4)
H20.3558−0.61130.49980.023*
C30.20512 (17)−0.7586 (5)0.51212 (9)0.0303 (4)
H30.2122−0.88570.54570.036*
C40.11538 (17)−0.7072 (5)0.48445 (11)0.0340 (5)
H40.0527−0.79160.49690.041*
C50.31026 (14)−0.2406 (5)0.39652 (8)0.0226 (4)
C60.47172 (14)0.0541 (5)0.38914 (8)0.0215 (4)
C70.49109 (15)0.3288 (4)0.29299 (8)0.0213 (4)
C80.43466 (15)0.3754 (5)0.24114 (9)0.0251 (4)
H80.36830.29220.23750.030*
C90.47486 (15)0.5415 (5)0.19539 (9)0.0268 (4)
H90.43650.57320.16030.032*
C100.57114 (15)0.6608 (4)0.20115 (8)0.0228 (4)
C110.62707 (15)0.6225 (5)0.25232 (9)0.0279 (4)
H110.69280.71000.25590.033*
C120.58713 (15)0.4557 (5)0.29867 (9)0.0293 (4)
H120.62540.42880.33400.035*
U11U22U33U12U13U23
Br0.02733 (13)0.03447 (14)0.02145 (12)0.00217 (8)0.00351 (8)0.00748 (8)
S10.0204 (2)0.0323 (3)0.0393 (3)−0.0031 (2)−0.00143 (19)−0.0057 (2)
S20.0253 (2)0.0430 (3)0.0181 (2)−0.0118 (2)−0.00757 (18)0.00732 (19)
O0.0251 (7)0.0443 (9)0.0222 (7)−0.0074 (6)−0.0074 (6)0.0054 (6)
N10.0211 (8)0.0283 (9)0.0145 (8)−0.0019 (6)−0.0039 (6)0.0029 (6)
N20.0208 (8)0.0319 (9)0.0187 (8)−0.0042 (7)−0.0045 (6)0.0038 (7)
C10.0193 (8)0.0278 (10)0.0212 (9)−0.0023 (8)0.0005 (7)−0.0055 (8)
C20.0217 (9)0.0198 (9)0.0159 (8)−0.0038 (7)0.0010 (7)−0.0037 (7)
C30.0391 (11)0.0255 (10)0.0266 (10)−0.0025 (9)0.0095 (8)−0.0036 (9)
C40.0286 (10)0.0260 (11)0.0477 (13)−0.0049 (9)0.0173 (9)−0.0085 (10)
C50.0207 (8)0.0272 (10)0.0199 (9)−0.0008 (8)−0.0020 (7)−0.0027 (8)
C60.0213 (8)0.0258 (10)0.0174 (8)0.0004 (7)−0.0024 (7)0.0002 (7)
C70.0230 (9)0.0247 (10)0.0162 (8)0.0002 (7)−0.0009 (7)0.0014 (7)
C80.0223 (9)0.0320 (11)0.0210 (9)−0.0031 (8)−0.0047 (7)0.0021 (8)
C90.0290 (10)0.0331 (11)0.0184 (9)0.0002 (9)−0.0053 (7)0.0041 (8)
C100.0264 (9)0.0232 (10)0.0190 (9)0.0034 (7)0.0027 (7)0.0035 (7)
C110.0222 (9)0.0376 (12)0.0238 (10)−0.0027 (8)−0.0029 (8)0.0053 (8)
C120.0253 (10)0.0411 (12)0.0212 (9)−0.0027 (9)−0.0052 (7)0.0077 (9)
Br—C101.9050 (19)C7—C121.387 (3)
S1—C41.701 (3)C7—C81.401 (3)
S1—C11.7111 (19)C8—C91.379 (3)
S2—C61.6629 (19)C9—C101.377 (3)
O—C51.234 (2)C10—C111.380 (3)
N1—C51.374 (2)C11—C121.390 (3)
N1—C61.402 (3)N1—H010.85 (3)
N2—C61.338 (2)N2—H020.85 (3)
N2—C71.417 (3)C2—H20.9500
C1—C21.402 (3)C3—H30.9500
C1—C51.465 (3)C4—H40.9500
C2—C31.415 (3)C8—H80.9500
C3—C41.352 (3)C9—H90.9500
C4—S1—C191.28 (10)C11—C10—Br119.39 (15)
C5—N1—C6128.33 (16)C10—C11—C12119.92 (19)
C6—N2—C7131.42 (17)C7—C12—C11119.56 (18)
C2—C1—C5130.75 (17)C5—N1—H01117.8 (18)
C2—C1—S1111.98 (14)C6—N1—H01112.6 (18)
C5—C1—S1117.26 (14)C6—N2—H02113.9 (18)
C1—C2—C3110.59 (17)C7—N2—H02114.7 (18)
C4—C3—C2113.1 (2)C1—C2—H2124.7
C3—C4—S1113.04 (16)C3—C2—H2124.7
O—C5—N1123.18 (18)C4—C3—H3123.5
O—C5—C1121.29 (17)C2—C3—H3123.5
N1—C5—C1115.51 (16)C3—C4—H4123.5
N2—C6—N1114.16 (16)S1—C4—H4123.5
N2—C6—S2128.06 (16)C9—C8—H8119.8
N1—C6—S2117.77 (13)C7—C8—H8119.8
C12—C7—C8119.64 (18)C10—C9—H9120.3
C12—C7—N2125.84 (17)C8—C9—H9120.3
C8—C7—N2114.50 (17)C10—C11—H11120.0
C9—C8—C7120.39 (18)C12—C11—H11120.0
C10—C9—C8119.34 (18)C7—C12—H12120.2
C9—C10—C11121.11 (18)C11—C12—H12120.2
C9—C10—Br119.48 (15)
C4—S1—C1—C20.46 (16)C5—N1—C6—N2−5.5 (3)
C4—S1—C1—C5−178.78 (16)C5—N1—C6—S2173.38 (16)
C5—C1—C2—C3179.2 (2)C6—N2—C7—C123.5 (4)
S1—C1—C2—C30.1 (2)C6—N2—C7—C8−178.4 (2)
C1—C2—C3—C4−0.8 (3)C12—C7—C8—C91.3 (3)
C2—C3—C4—S11.1 (2)N2—C7—C8—C9−177.00 (19)
C1—S1—C4—C3−0.92 (18)C7—C8—C9—C100.1 (3)
C6—N1—C5—O2.2 (3)C8—C9—C10—C11−1.4 (3)
C6—N1—C5—C1−176.30 (18)C8—C9—C10—Br177.04 (16)
C2—C1—C5—O164.5 (2)C9—C10—C11—C121.4 (3)
S1—C1—C5—O−16.4 (3)Br—C10—C11—C12−177.09 (17)
C2—C1—C5—N1−17.0 (3)C8—C7—C12—C11−1.3 (3)
S1—C1—C5—N1162.10 (14)N2—C7—C12—C11176.8 (2)
C7—N2—C6—N1−177.11 (19)C10—C11—C12—C70.0 (3)
C7—N2—C6—S24.2 (3)
D—H···AD—HH···AD···AD—H···A
N1—H01···S2i0.85 (3)2.74 (3)3.5625 (16)163 (2)
N2—H02···O0.85 (3)1.89 (3)2.624 (2)144 (2)
C9—H9···S1ii0.952.893.704 (2)144
C2—H2···S2i0.952.763.3193 (18)119
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H01⋯S2i0.85 (3)2.74 (3)3.5625 (16)163 (2)
N2—H02⋯O0.85 (3)1.89 (3)2.624 (2)144 (2)
C9—H9⋯S1ii0.952.893.704 (2)144
C2—H2⋯S2i0.952.763.3193 (18)119

Symmetry codes: (i) ; (ii) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1-(1,3-Benzothia-zol-2-yl)-3-benzoyl-thio-urea.

Authors:  Uzma Yunus; Muhammad Kalim Tahir; Moazzam Hussain Bhatti; Saqib Ali; Wai-Yeung Wong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-06

3.  1-(4-Acetyl-phen-yl)-3-butyrylthio-urea.

Authors:  Sohail Saeed; Moazzam Hussain Bhatti; Uzma Yunus; Peter G Jones
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-23

4.  Genotoxicity of two anticancer drugs, gemcitabine and topotecan, in mouse bone marrow in vivo.

Authors:  Nilüfer Aydemir; Rahmi Bilaloğlu
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5.  Ethyl 4-(3-benzoyl-thio-ureido)benzoate.

Authors:  Sohail Saeed; Moazzam Hussain Bhatti; Uzma Yunus; Peter G Jones
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-12

6.  Ethyl 4-(3-butyrylthio-ureido)benzoate.

Authors:  Sohail Saeed; Moazzam Hussain Bhatti; Muhammad Kalim Tahir; Peter G Jones
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-28
  6 in total

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