| Literature DB >> 21583593 |
Yu-Jie Ding, Jian Yao, Jian-Chao Wu, Wen-Kui Dong, Jun-Feng Tong.
Abstract
The title compound, C(13)H(10)ClN(3)OS, was prepared by the reaction of 3-amino-2-chloropyridine with benzoyl isothio-cyanate at room temperature. The thio-urea group makes dihedral angles of 47.17 (5) and 51.88 (4)°, respectively, with the benzene and pyridyl rings, while the angle between the benzene and pyridine rings is 8.91 (3)°. Inter-molecular hydrogen-bond inter-actions link neighbouring mol-ecules into an infinite supra-molecular structure.Entities:
Year: 2009 PMID: 21583593 PMCID: PMC2977241 DOI: 10.1107/S1600536809027081
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H10ClN3OS | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 2087 reflections |
| θ = 2.3–25.0° | |
| µ = 0.45 mm−1 | |
| β = 93.889 (1)° | Needle-like, colourless |
| 0.41 × 0.20 × 0.18 mm | |
| Bruker SMART 1000 CCD area-detector diffractometer | 2315 independent reflections |
| Radiation source: fine-focus sealed tube | 1661 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.0°, θmin = 1.6° |
| Absorption correction: multi-scan ( | |
| 6459 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2315 reflections | (Δ/σ)max < 0.001 |
| 172 parameters | Δρmax = 0.26 e Å−3 |
| 0 restraints | Δρmin = −0.21 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.45798 (17) | 0.45341 (4) | 0.58736 (2) | 0.0389 (2) | |
| Cl1 | 0.4376 (2) | 0.65386 (5) | 0.77102 (3) | 0.0581 (2) | |
| N1 | 0.6989 (5) | 0.61464 (12) | 0.56704 (8) | 0.0351 (5) | |
| H1 | 0.6662 | 0.5986 | 0.5300 | 0.042* | |
| N2 | 0.7371 (5) | 0.57099 (12) | 0.66633 (7) | 0.0380 (5) | |
| H2 | 0.8131 | 0.6244 | 0.6727 | 0.046* | |
| N3 | 0.5774 (6) | 0.49783 (16) | 0.81887 (9) | 0.0523 (6) | |
| O1 | 0.8401 (6) | 0.73435 (11) | 0.62683 (7) | 0.0629 (6) | |
| C1 | 0.6406 (6) | 0.54897 (14) | 0.60938 (9) | 0.0313 (5) | |
| C2 | 0.8025 (7) | 0.70230 (15) | 0.57650 (10) | 0.0387 (6) | |
| C3 | 0.8633 (6) | 0.75438 (14) | 0.52169 (10) | 0.0337 (6) | |
| C4 | 1.0013 (6) | 0.71616 (16) | 0.47233 (10) | 0.0374 (6) | |
| H4 | 1.0520 | 0.6553 | 0.4724 | 0.045* | |
| C5 | 1.0642 (7) | 0.76769 (17) | 0.42297 (11) | 0.0475 (7) | |
| H5 | 1.1643 | 0.7420 | 0.3905 | 0.057* | |
| C6 | 0.9790 (7) | 0.85723 (18) | 0.42174 (12) | 0.0541 (8) | |
| H6 | 1.0176 | 0.8917 | 0.3881 | 0.065* | |
| C7 | 0.8371 (7) | 0.89566 (17) | 0.47016 (12) | 0.0534 (8) | |
| H7 | 0.7760 | 0.9558 | 0.4688 | 0.064* | |
| C8 | 0.7846 (7) | 0.84549 (16) | 0.52092 (11) | 0.0459 (7) | |
| H8 | 0.6974 | 0.8723 | 0.5543 | 0.055* | |
| C9 | 0.5921 (6) | 0.54468 (16) | 0.76902 (10) | 0.0386 (6) | |
| C10 | 0.7247 (6) | 0.51388 (15) | 0.71689 (9) | 0.0331 (6) | |
| C11 | 0.8605 (7) | 0.42887 (16) | 0.71795 (11) | 0.0415 (6) | |
| H11 | 0.9587 | 0.4060 | 0.6844 | 0.050* | |
| C12 | 0.8487 (7) | 0.37809 (17) | 0.76953 (11) | 0.0488 (7) | |
| H12 | 0.9360 | 0.3202 | 0.7713 | 0.059* | |
| C13 | 0.7047 (8) | 0.41517 (19) | 0.81819 (12) | 0.0547 (8) | |
| H13 | 0.6955 | 0.3805 | 0.8527 | 0.066* |
| S1 | 0.0473 (4) | 0.0371 (4) | 0.0322 (3) | −0.0108 (3) | 0.0018 (3) | −0.0030 (3) |
| Cl1 | 0.0701 (5) | 0.0542 (4) | 0.0505 (4) | 0.0118 (4) | 0.0069 (4) | −0.0115 (3) |
| N1 | 0.0486 (13) | 0.0312 (11) | 0.0250 (10) | −0.0073 (10) | −0.0004 (9) | −0.0021 (8) |
| N2 | 0.0557 (14) | 0.0300 (11) | 0.0279 (10) | −0.0078 (10) | −0.0009 (9) | −0.0024 (8) |
| N3 | 0.0615 (17) | 0.0609 (16) | 0.0348 (12) | −0.0110 (13) | 0.0049 (11) | 0.0027 (11) |
| O1 | 0.1150 (19) | 0.0399 (10) | 0.0337 (10) | −0.0175 (11) | 0.0031 (10) | −0.0068 (8) |
| C1 | 0.0322 (14) | 0.0317 (12) | 0.0301 (12) | 0.0023 (11) | 0.0040 (10) | −0.0022 (10) |
| C2 | 0.0478 (17) | 0.0328 (14) | 0.0352 (14) | −0.0048 (12) | 0.0005 (12) | −0.0013 (11) |
| C3 | 0.0360 (15) | 0.0304 (13) | 0.0339 (13) | −0.0053 (11) | −0.0040 (11) | −0.0005 (10) |
| C4 | 0.0382 (15) | 0.0346 (13) | 0.0387 (14) | −0.0050 (11) | −0.0031 (12) | −0.0006 (11) |
| C5 | 0.0510 (18) | 0.0526 (17) | 0.0391 (14) | −0.0094 (14) | 0.0046 (13) | −0.0014 (12) |
| C6 | 0.065 (2) | 0.0529 (18) | 0.0436 (16) | −0.0102 (15) | −0.0023 (14) | 0.0158 (13) |
| C7 | 0.062 (2) | 0.0355 (15) | 0.0610 (19) | −0.0001 (14) | −0.0046 (16) | 0.0089 (13) |
| C8 | 0.0536 (18) | 0.0362 (15) | 0.0479 (15) | 0.0007 (13) | 0.0037 (13) | −0.0032 (12) |
| C9 | 0.0424 (16) | 0.0402 (14) | 0.0331 (13) | −0.0059 (12) | 0.0014 (11) | −0.0041 (11) |
| C10 | 0.0360 (15) | 0.0332 (13) | 0.0294 (12) | −0.0059 (11) | −0.0029 (10) | 0.0006 (10) |
| C11 | 0.0479 (17) | 0.0374 (14) | 0.0386 (14) | −0.0008 (12) | −0.0017 (12) | −0.0028 (11) |
| C12 | 0.0556 (19) | 0.0400 (15) | 0.0492 (16) | −0.0053 (14) | −0.0078 (14) | 0.0067 (13) |
| C13 | 0.067 (2) | 0.0562 (18) | 0.0398 (16) | −0.0159 (16) | −0.0051 (14) | 0.0147 (14) |
| S1—C1 | 1.657 (2) | C4—H4 | 0.9300 |
| Cl1—C9 | 1.741 (2) | C5—C6 | 1.378 (3) |
| N1—C2 | 1.382 (3) | C5—H5 | 0.9300 |
| N1—C1 | 1.390 (3) | C6—C7 | 1.374 (4) |
| N1—H1 | 0.8600 | C6—H6 | 0.9300 |
| N2—C1 | 1.340 (3) | C7—C8 | 1.383 (3) |
| N2—C10 | 1.416 (3) | C7—H7 | 0.9300 |
| N2—H2 | 0.8600 | C8—H8 | 0.9300 |
| N3—C9 | 1.316 (3) | C9—C10 | 1.384 (3) |
| N3—C13 | 1.332 (3) | C10—C11 | 1.377 (3) |
| O1—C2 | 1.218 (3) | C11—C12 | 1.379 (3) |
| C2—C3 | 1.480 (3) | C11—H11 | 0.9300 |
| C3—C4 | 1.382 (3) | C12—C13 | 1.373 (4) |
| C3—C8 | 1.395 (3) | C12—H12 | 0.9300 |
| C4—C5 | 1.378 (3) | C13—H13 | 0.9300 |
| C2—N1—C1 | 128.66 (18) | C7—C6—H6 | 120.0 |
| C2—N1—H1 | 115.7 | C5—C6—H6 | 120.0 |
| C1—N1—H1 | 115.7 | C6—C7—C8 | 120.5 (2) |
| C1—N2—C10 | 125.59 (19) | C6—C7—H7 | 119.8 |
| C1—N2—H2 | 117.2 | C8—C7—H7 | 119.8 |
| C10—N2—H2 | 117.2 | C7—C8—C3 | 119.5 (2) |
| C9—N3—C13 | 116.4 (2) | C7—C8—H8 | 120.3 |
| N2—C1—N1 | 114.80 (19) | C3—C8—H8 | 120.3 |
| N2—C1—S1 | 125.53 (17) | N3—C9—C10 | 124.9 (2) |
| N1—C1—S1 | 119.66 (15) | N3—C9—Cl1 | 116.11 (19) |
| O1—C2—N1 | 121.9 (2) | C10—C9—Cl1 | 119.02 (18) |
| O1—C2—C3 | 122.4 (2) | C11—C10—C9 | 117.4 (2) |
| N1—C2—C3 | 115.72 (19) | C11—C10—N2 | 122.3 (2) |
| C4—C3—C8 | 119.5 (2) | C9—C10—N2 | 120.2 (2) |
| C4—C3—C2 | 122.2 (2) | C10—C11—C12 | 119.0 (2) |
| C8—C3—C2 | 118.3 (2) | C10—C11—H11 | 120.5 |
| C5—C4—C3 | 120.4 (2) | C12—C11—H11 | 120.5 |
| C5—C4—H4 | 119.8 | C13—C12—C11 | 118.3 (2) |
| C3—C4—H4 | 119.8 | C13—C12—H12 | 120.8 |
| C6—C5—C4 | 120.0 (2) | C11—C12—H12 | 120.8 |
| C6—C5—H5 | 120.0 | N3—C13—C12 | 123.9 (2) |
| C4—C5—H5 | 120.0 | N3—C13—H13 | 118.0 |
| C7—C6—C5 | 120.1 (2) | C12—C13—H13 | 118.0 |
| C10—N2—C1—N1 | −175.8 (2) | C4—C3—C8—C7 | 1.8 (4) |
| C10—N2—C1—S1 | 5.3 (3) | C2—C3—C8—C7 | −179.7 (2) |
| C2—N1—C1—N2 | −8.8 (4) | C13—N3—C9—C10 | 0.8 (4) |
| C2—N1—C1—S1 | 170.2 (2) | C13—N3—C9—Cl1 | −178.04 (19) |
| C1—N1—C2—O1 | −3.9 (4) | N3—C9—C10—C11 | −2.1 (4) |
| C1—N1—C2—C3 | 176.3 (2) | Cl1—C9—C10—C11 | 176.72 (18) |
| O1—C2—C3—C4 | 144.0 (3) | N3—C9—C10—N2 | −178.1 (2) |
| N1—C2—C3—C4 | −36.2 (3) | Cl1—C9—C10—N2 | 0.7 (3) |
| O1—C2—C3—C8 | −34.6 (4) | C1—N2—C10—C11 | 50.7 (3) |
| N1—C2—C3—C8 | 145.3 (2) | C1—N2—C10—C9 | −133.5 (2) |
| C8—C3—C4—C5 | 0.7 (4) | C9—C10—C11—C12 | 2.0 (3) |
| C2—C3—C4—C5 | −177.8 (2) | N2—C10—C11—C12 | 177.9 (2) |
| C3—C4—C5—C6 | −2.2 (4) | C10—C11—C12—C13 | −0.8 (4) |
| C4—C5—C6—C7 | 1.2 (4) | C9—N3—C13—C12 | 0.6 (4) |
| C5—C6—C7—C8 | 1.2 (4) | C11—C12—C13—N3 | −0.6 (4) |
| C6—C7—C8—C3 | −2.7 (4) |
| H··· | ||||
| N2—H2···O1 | 0.86 | 1.94 | 2.633 (2) | 137 |
| N1—H1···S1i | 0.86 | 2.74 | 3.5982 (18) | 178 |
| C12—H12···O1ii | 0.93 | 2.70 | 3.324 (3) | 125 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2⋯O1 | 0.86 | 1.94 | 2.633 (2) | 137 |
| N1—H1⋯S1i | 0.86 | 2.74 | 3.5982 (18) | 178 |
| C12—H12⋯O1ii | 0.93 | 2.70 | 3.324 (3) | 125 |
Symmetry codes: (i) ; (ii) .