Literature DB >> 21583593

N-Benzoyl-N'-(2-chloro-3-pyrid-yl)thio-urea.

Yu-Jie Ding, Jian Yao, Jian-Chao Wu, Wen-Kui Dong, Jun-Feng Tong.   

Abstract

The title compound, C(13)H(10)ClN(3)OS, was prepared by the reaction of 3-amino-2-chloropyridine with benzoyl isothio-cyanate at room temperature. The thio-urea group makes dihedral angles of 47.17 (5) and 51.88 (4)°, respectively, with the benzene and pyridyl rings, while the angle between the benzene and pyridine rings is 8.91 (3)°. Inter-molecular hydrogen-bond inter-actions link neighbouring mol-ecules into an infinite supra-molecular structure.

Entities:  

Year:  2009        PMID: 21583593      PMCID: PMC2977241          DOI: 10.1107/S1600536809027081

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activities of benzanilide and its N-substituted derivatives, see: Teoh et al. (1999 ▶); Campo et al. (2002 ▶). For the functions of related chloro­phenyl compounds, see: Saeed et al. (2008 ▶); Gowda et al. (2008a ▶,b ▶,c ▶). For an isomeric compound, see: Chai et al. (2008 ▶). For our previous work on thio­urea and its derivatives, see: Dong et al. (2006 ▶, 2007 ▶, 2008a ▶,b ▶). For the synthetic procedure, see: Ding et al. (2008 ▶).

Experimental

Crystal data

C13H10ClN3OS M = 291.73 Monoclinic, a = 3.9443 (4) Å b = 14.9250 (15) Å c = 22.268 (2) Å β = 93.889 (1)° V = 1307.9 (2) Å3 Z = 4 Mo Kα radiation μ = 0.45 mm−1 T = 298 K 0.41 × 0.20 × 0.18 mm

Data collection

Bruker SMART 1000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.839, T max = 0.924 6459 measured reflections 2315 independent reflections 1661 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.088 S = 1.03 2315 reflections 172 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809027081/at2841sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809027081/at2841Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H10ClN3OSF(000) = 600
Mr = 291.73Dx = 1.482 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2087 reflections
a = 3.9443 (4) Åθ = 2.3–25.0°
b = 14.9250 (15) ŵ = 0.45 mm1
c = 22.268 (2) ÅT = 298 K
β = 93.889 (1)°Needle-like, colourless
V = 1307.9 (2) Å30.41 × 0.20 × 0.18 mm
Z = 4
Bruker SMART 1000 CCD area-detector diffractometer2315 independent reflections
Radiation source: fine-focus sealed tube1661 reflections with I > 2σ(I)
graphiteRint = 0.040
φ and ω scansθmax = 25.0°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −4→4
Tmin = 0.839, Tmax = 0.924k = −17→14
6459 measured reflectionsl = −26→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.088H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0355P)2 + 0.2536P] where P = (Fo2 + 2Fc2)/3
2315 reflections(Δ/σ)max < 0.001
172 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.45798 (17)0.45341 (4)0.58736 (2)0.0389 (2)
Cl10.4376 (2)0.65386 (5)0.77102 (3)0.0581 (2)
N10.6989 (5)0.61464 (12)0.56704 (8)0.0351 (5)
H10.66620.59860.53000.042*
N20.7371 (5)0.57099 (12)0.66633 (7)0.0380 (5)
H20.81310.62440.67270.046*
N30.5774 (6)0.49783 (16)0.81887 (9)0.0523 (6)
O10.8401 (6)0.73435 (11)0.62683 (7)0.0629 (6)
C10.6406 (6)0.54897 (14)0.60938 (9)0.0313 (5)
C20.8025 (7)0.70230 (15)0.57650 (10)0.0387 (6)
C30.8633 (6)0.75438 (14)0.52169 (10)0.0337 (6)
C41.0013 (6)0.71616 (16)0.47233 (10)0.0374 (6)
H41.05200.65530.47240.045*
C51.0642 (7)0.76769 (17)0.42297 (11)0.0475 (7)
H51.16430.74200.39050.057*
C60.9790 (7)0.85723 (18)0.42174 (12)0.0541 (8)
H61.01760.89170.38810.065*
C70.8371 (7)0.89566 (17)0.47016 (12)0.0534 (8)
H70.77600.95580.46880.064*
C80.7846 (7)0.84549 (16)0.52092 (11)0.0459 (7)
H80.69740.87230.55430.055*
C90.5921 (6)0.54468 (16)0.76902 (10)0.0386 (6)
C100.7247 (6)0.51388 (15)0.71689 (9)0.0331 (6)
C110.8605 (7)0.42887 (16)0.71795 (11)0.0415 (6)
H110.95870.40600.68440.050*
C120.8487 (7)0.37809 (17)0.76953 (11)0.0488 (7)
H120.93600.32020.77130.059*
C130.7047 (8)0.41517 (19)0.81819 (12)0.0547 (8)
H130.69550.38050.85270.066*
U11U22U33U12U13U23
S10.0473 (4)0.0371 (4)0.0322 (3)−0.0108 (3)0.0018 (3)−0.0030 (3)
Cl10.0701 (5)0.0542 (4)0.0505 (4)0.0118 (4)0.0069 (4)−0.0115 (3)
N10.0486 (13)0.0312 (11)0.0250 (10)−0.0073 (10)−0.0004 (9)−0.0021 (8)
N20.0557 (14)0.0300 (11)0.0279 (10)−0.0078 (10)−0.0009 (9)−0.0024 (8)
N30.0615 (17)0.0609 (16)0.0348 (12)−0.0110 (13)0.0049 (11)0.0027 (11)
O10.1150 (19)0.0399 (10)0.0337 (10)−0.0175 (11)0.0031 (10)−0.0068 (8)
C10.0322 (14)0.0317 (12)0.0301 (12)0.0023 (11)0.0040 (10)−0.0022 (10)
C20.0478 (17)0.0328 (14)0.0352 (14)−0.0048 (12)0.0005 (12)−0.0013 (11)
C30.0360 (15)0.0304 (13)0.0339 (13)−0.0053 (11)−0.0040 (11)−0.0005 (10)
C40.0382 (15)0.0346 (13)0.0387 (14)−0.0050 (11)−0.0031 (12)−0.0006 (11)
C50.0510 (18)0.0526 (17)0.0391 (14)−0.0094 (14)0.0046 (13)−0.0014 (12)
C60.065 (2)0.0529 (18)0.0436 (16)−0.0102 (15)−0.0023 (14)0.0158 (13)
C70.062 (2)0.0355 (15)0.0610 (19)−0.0001 (14)−0.0046 (16)0.0089 (13)
C80.0536 (18)0.0362 (15)0.0479 (15)0.0007 (13)0.0037 (13)−0.0032 (12)
C90.0424 (16)0.0402 (14)0.0331 (13)−0.0059 (12)0.0014 (11)−0.0041 (11)
C100.0360 (15)0.0332 (13)0.0294 (12)−0.0059 (11)−0.0029 (10)0.0006 (10)
C110.0479 (17)0.0374 (14)0.0386 (14)−0.0008 (12)−0.0017 (12)−0.0028 (11)
C120.0556 (19)0.0400 (15)0.0492 (16)−0.0053 (14)−0.0078 (14)0.0067 (13)
C130.067 (2)0.0562 (18)0.0398 (16)−0.0159 (16)−0.0051 (14)0.0147 (14)
S1—C11.657 (2)C4—H40.9300
Cl1—C91.741 (2)C5—C61.378 (3)
N1—C21.382 (3)C5—H50.9300
N1—C11.390 (3)C6—C71.374 (4)
N1—H10.8600C6—H60.9300
N2—C11.340 (3)C7—C81.383 (3)
N2—C101.416 (3)C7—H70.9300
N2—H20.8600C8—H80.9300
N3—C91.316 (3)C9—C101.384 (3)
N3—C131.332 (3)C10—C111.377 (3)
O1—C21.218 (3)C11—C121.379 (3)
C2—C31.480 (3)C11—H110.9300
C3—C41.382 (3)C12—C131.373 (4)
C3—C81.395 (3)C12—H120.9300
C4—C51.378 (3)C13—H130.9300
C2—N1—C1128.66 (18)C7—C6—H6120.0
C2—N1—H1115.7C5—C6—H6120.0
C1—N1—H1115.7C6—C7—C8120.5 (2)
C1—N2—C10125.59 (19)C6—C7—H7119.8
C1—N2—H2117.2C8—C7—H7119.8
C10—N2—H2117.2C7—C8—C3119.5 (2)
C9—N3—C13116.4 (2)C7—C8—H8120.3
N2—C1—N1114.80 (19)C3—C8—H8120.3
N2—C1—S1125.53 (17)N3—C9—C10124.9 (2)
N1—C1—S1119.66 (15)N3—C9—Cl1116.11 (19)
O1—C2—N1121.9 (2)C10—C9—Cl1119.02 (18)
O1—C2—C3122.4 (2)C11—C10—C9117.4 (2)
N1—C2—C3115.72 (19)C11—C10—N2122.3 (2)
C4—C3—C8119.5 (2)C9—C10—N2120.2 (2)
C4—C3—C2122.2 (2)C10—C11—C12119.0 (2)
C8—C3—C2118.3 (2)C10—C11—H11120.5
C5—C4—C3120.4 (2)C12—C11—H11120.5
C5—C4—H4119.8C13—C12—C11118.3 (2)
C3—C4—H4119.8C13—C12—H12120.8
C6—C5—C4120.0 (2)C11—C12—H12120.8
C6—C5—H5120.0N3—C13—C12123.9 (2)
C4—C5—H5120.0N3—C13—H13118.0
C7—C6—C5120.1 (2)C12—C13—H13118.0
C10—N2—C1—N1−175.8 (2)C4—C3—C8—C71.8 (4)
C10—N2—C1—S15.3 (3)C2—C3—C8—C7−179.7 (2)
C2—N1—C1—N2−8.8 (4)C13—N3—C9—C100.8 (4)
C2—N1—C1—S1170.2 (2)C13—N3—C9—Cl1−178.04 (19)
C1—N1—C2—O1−3.9 (4)N3—C9—C10—C11−2.1 (4)
C1—N1—C2—C3176.3 (2)Cl1—C9—C10—C11176.72 (18)
O1—C2—C3—C4144.0 (3)N3—C9—C10—N2−178.1 (2)
N1—C2—C3—C4−36.2 (3)Cl1—C9—C10—N20.7 (3)
O1—C2—C3—C8−34.6 (4)C1—N2—C10—C1150.7 (3)
N1—C2—C3—C8145.3 (2)C1—N2—C10—C9−133.5 (2)
C8—C3—C4—C50.7 (4)C9—C10—C11—C122.0 (3)
C2—C3—C4—C5−177.8 (2)N2—C10—C11—C12177.9 (2)
C3—C4—C5—C6−2.2 (4)C10—C11—C12—C13−0.8 (4)
C4—C5—C6—C71.2 (4)C9—N3—C13—C120.6 (4)
C5—C6—C7—C81.2 (4)C11—C12—C13—N3−0.6 (4)
C6—C7—C8—C3−2.7 (4)
D—H···AD—HH···AD···AD—H···A
N2—H2···O10.861.942.633 (2)137
N1—H1···S1i0.862.743.5982 (18)178
C12—H12···O1ii0.932.703.324 (3)125
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O10.861.942.633 (2)137
N1—H1⋯S1i0.862.743.5982 (18)178
C12—H12⋯O1ii0.932.703.324 (3)125

Symmetry codes: (i) ; (ii) .

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