Literature DB >> 22798883

(Z)-4-Chloro-N-(1-{2-[3-(4-chloro-benzoyl)ureido]eth-yl}imidazolidin-2-yl-idene)benzamide.

Dalina Adan, Suhaila Sapari, Siti Nadiah Halim, Bohari M Yamin.   

Abstract

The title compound, C(20)H(19)Cl(2)N(5)O(2)S, was obtained from the reaction of 4-chloro-benzoyl isothio-cyanate with diethyl-ene-triamine. The imidazolidine ring is slightly twisted with an N-C-C-N torsion angle of 15.4 (4)°, while the thio-urea moiety maintains its trans-cis geometry. The mol-ecule is stabilized by intramolecular N-H⋯O hydrogen bonds. The crystal structure features N-H⋯O, N-H⋯S and C-H⋯O hydrogen bonds and π-π interactions between benzene rings with a centroid-centroid distance of 3.607 (3) Å.

Entities:  

Year:  2012        PMID: 22798883      PMCID: PMC3394018          DOI: 10.1107/S1600536812028218

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures of bis­(N-benzoyl­thio­ureas) derived from aliphatic diamines, see: Ding et al. (2008 ▶). For those derived from cyclo­hexane diamine, see: Jumal et al. (2011 ▶). For those derived from aromatic diamines, see: Osman & Yamin (2011 ▶); Dong et al. (2008 ▶).

Experimental

Crystal data

C20H19Cl2N5O2S M = 464.36 Monoclinic, a = 24.488 (7) Å b = 6.645 (2) Å c = 13.108 (4) Å β = 97.16 (2)° V = 2116.2 (11) Å3 Z = 4 Mo Kα radiation μ = 0.43 mm−1 T = 296 K 0.22 × 0.08 × 0.07 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.911, T max = 0.970 8499 measured reflections 4165 independent reflections 2855 reflections with I > 2σ(I) R int = 0.055

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.090 S = 0.93 4165 reflections 283 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.28 e Å−3 Absolute structure: Flack (1983 ▶) 1987 Friedel pairs Flack parameter: 0.06 (6) Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812028218/go2061sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812028218/go2061Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812028218/go2061Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H19Cl2N5O2SF(000) = 960
Mr = 464.36Dx = 1.457 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 2230 reflections
a = 24.488 (7) Åθ = 3.1–26.4°
b = 6.645 (2) ŵ = 0.43 mm1
c = 13.108 (4) ÅT = 296 K
β = 97.16 (2)°Slab, colourless
V = 2116.2 (11) Å30.22 × 0.08 × 0.07 mm
Z = 4
Bruker SMART APEX CCD area-detector diffractometer4165 independent reflections
Radiation source: fine-focus sealed tube2855 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.055
Detector resolution: 83.66 pixels mm-1θmax = 26.4°, θmin = 3.1°
ω scanh = −30→30
Absorption correction: multi-scan (SADABS; Bruker, 2000)k = −8→8
Tmin = 0.911, Tmax = 0.970l = −16→16
8499 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.090w = 1/[σ2(Fo2) + (0.0374P)2] where P = (Fo2 + 2Fc2)/3
S = 0.93(Δ/σ)max < 0.001
4165 reflectionsΔρmax = 0.18 e Å3
283 parametersΔρmin = −0.28 e Å3
5 restraintsAbsolute structure: Flack (1983) ???? Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.06 (6)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.84274 (4)0.3989 (2)0.19364 (9)0.0858 (4)
Cl20.83019 (4)−0.17344 (19)0.37999 (10)0.0887 (4)
S10.47526 (3)0.21472 (13)0.36669 (7)0.0574 (3)
O10.59035 (9)0.0679 (4)0.0292 (2)0.0654 (7)
O20.63898 (9)0.5325 (3)0.35719 (19)0.0536 (6)
N10.56767 (10)0.3697 (4)0.1039 (2)0.0456 (7)
N20.48754 (11)0.1718 (5)0.0424 (2)0.0564 (8)
H2A0.5083 (15)0.083 (5)0.018 (3)0.100 (16)*
N30.47666 (10)0.4668 (4)0.1099 (2)0.0478 (7)
N40.53148 (11)0.5442 (4)0.3285 (2)0.0479 (7)
H4A0.5640 (7)0.584 (5)0.319 (3)0.053 (10)*
N50.58290 (10)0.2711 (4)0.3890 (2)0.0426 (6)
H5A0.583 (2)0.153 (3)0.415 (4)0.13 (2)*
C10.70080 (13)0.1240 (6)0.1077 (3)0.0509 (9)
H1B0.6892−0.00660.09140.061*
C20.75617 (14)0.1603 (6)0.1344 (3)0.0550 (9)
H2B0.78170.05610.13680.066*
C30.77275 (14)0.3549 (6)0.1573 (3)0.0566 (10)
C40.73592 (13)0.5075 (5)0.1551 (3)0.0534 (9)
H4B0.74810.63770.17100.064*
C50.68087 (14)0.4709 (5)0.1295 (2)0.0496 (8)
H5B0.65590.57640.12880.060*
C60.66193 (13)0.2761 (5)0.1045 (2)0.0434 (8)
C70.60276 (13)0.2283 (5)0.0752 (2)0.0444 (8)
C80.51449 (13)0.3336 (5)0.0849 (2)0.0433 (8)
C90.42894 (14)0.2020 (6)0.0255 (3)0.0606 (9)
H9A0.40950.08710.04880.073*
H9B0.41640.2259−0.04660.073*
C100.42110 (14)0.3873 (6)0.0898 (3)0.0624 (10)
H10A0.39640.48320.05200.075*
H10B0.40680.35190.15320.075*
C110.48875 (14)0.6591 (5)0.1608 (3)0.0538 (9)
H11A0.46330.75940.12940.065*
H11B0.52560.70060.15040.065*
C120.48476 (14)0.6519 (5)0.2745 (3)0.0516 (9)
H12A0.48390.78780.30110.062*
H12B0.45090.58510.28620.062*
C130.53131 (12)0.3544 (5)0.3597 (2)0.0420 (7)
C140.63297 (12)0.3540 (5)0.3762 (2)0.0412 (7)
C150.68047 (12)0.2137 (5)0.3839 (2)0.0419 (7)
C160.67515 (12)0.0123 (5)0.3578 (2)0.0443 (8)
H16A0.6403−0.04240.34020.053*
C170.72101 (13)−0.1086 (5)0.3576 (3)0.0483 (8)
H17A0.7173−0.24390.33980.058*
C180.77199 (13)−0.0256 (6)0.3840 (3)0.0516 (8)
C190.77881 (13)0.1758 (5)0.4111 (3)0.0524 (8)
H19A0.81370.22950.42940.063*
C200.73277 (12)0.2930 (5)0.4101 (2)0.0473 (8)
H20A0.73660.42850.42740.057*
U11U22U33U12U13U23
Cl10.0511 (5)0.1137 (9)0.0944 (8)−0.0131 (6)0.0161 (5)−0.0142 (7)
Cl20.0558 (6)0.0981 (9)0.1106 (9)0.0265 (6)0.0045 (5)−0.0239 (8)
S10.0419 (4)0.0488 (5)0.0824 (7)0.0017 (4)0.0109 (4)0.0106 (5)
O10.0544 (13)0.0527 (15)0.0894 (19)−0.0025 (11)0.0106 (12)−0.0293 (14)
O20.0536 (13)0.0330 (13)0.0734 (17)−0.0069 (10)0.0045 (11)0.0035 (12)
N10.0427 (15)0.0405 (16)0.0538 (18)0.0054 (12)0.0067 (13)−0.0050 (13)
N20.0456 (16)0.0532 (19)0.071 (2)0.0027 (14)0.0082 (14)−0.0145 (16)
N30.0490 (15)0.0394 (16)0.0549 (18)0.0093 (12)0.0058 (13)−0.0024 (14)
N40.0479 (16)0.0333 (15)0.0626 (19)0.0049 (12)0.0068 (14)0.0006 (13)
N50.0381 (14)0.0378 (15)0.0518 (17)0.0011 (12)0.0055 (12)0.0054 (14)
C10.054 (2)0.050 (2)0.049 (2)0.0073 (16)0.0064 (16)−0.0063 (17)
C20.053 (2)0.065 (2)0.049 (2)0.0126 (17)0.0112 (16)−0.0059 (19)
C30.050 (2)0.074 (3)0.047 (2)−0.0066 (19)0.0136 (17)−0.004 (2)
C40.056 (2)0.049 (2)0.058 (2)−0.0078 (17)0.0134 (17)−0.0080 (18)
C50.059 (2)0.046 (2)0.046 (2)0.0006 (16)0.0140 (16)−0.0008 (16)
C60.0538 (19)0.044 (2)0.0344 (19)0.0026 (15)0.0130 (15)−0.0008 (15)
C70.0492 (18)0.0414 (19)0.043 (2)0.0021 (14)0.0071 (15)−0.0056 (16)
C80.0509 (19)0.0421 (19)0.0378 (18)0.0025 (15)0.0090 (15)−0.0011 (15)
C90.0486 (19)0.062 (2)0.072 (3)−0.0022 (16)0.0121 (18)−0.008 (2)
C100.048 (2)0.068 (3)0.070 (3)0.0153 (17)0.0064 (18)−0.003 (2)
C110.061 (2)0.0326 (18)0.068 (3)0.0122 (15)0.0082 (18)0.0048 (17)
C120.063 (2)0.0361 (19)0.055 (2)0.0175 (15)0.0035 (17)−0.0065 (16)
C130.0421 (16)0.0401 (19)0.044 (2)0.0069 (13)0.0053 (14)−0.0033 (15)
C140.0422 (17)0.0419 (19)0.0393 (19)−0.0029 (14)0.0041 (13)−0.0008 (16)
C150.0432 (16)0.0407 (18)0.0420 (19)−0.0046 (13)0.0060 (14)0.0014 (15)
C160.0411 (16)0.0443 (19)0.048 (2)−0.0046 (14)0.0074 (14)0.0008 (16)
C170.0473 (18)0.0401 (18)0.058 (2)−0.0011 (15)0.0101 (16)−0.0010 (17)
C180.0441 (17)0.060 (2)0.051 (2)0.0098 (16)0.0082 (15)−0.0001 (18)
C190.0387 (17)0.059 (2)0.058 (2)−0.0068 (16)0.0023 (15)−0.0031 (19)
C200.0448 (18)0.0454 (19)0.051 (2)−0.0051 (15)0.0033 (15)−0.0003 (16)
Cl1—C31.745 (4)C4—H4B0.9300
Cl2—C181.737 (3)C5—C61.400 (4)
S1—C131.669 (3)C5—H5B0.9300
O1—C71.243 (4)C6—C71.486 (4)
O2—C141.224 (3)C9—C101.518 (5)
N1—C81.317 (4)C9—H9A0.9700
N1—C71.358 (4)C9—H9B0.9700
N2—C81.346 (4)C10—H10A0.9700
N2—C91.438 (4)C10—H10B0.9700
N2—H2A0.865 (10)C11—C121.505 (5)
N3—C81.351 (4)C11—H11A0.9700
N3—C101.453 (4)C11—H11B0.9700
N3—C111.455 (4)C12—H12A0.9700
N4—C131.326 (4)C12—H12B0.9700
N4—C121.456 (4)C14—C151.484 (4)
N4—H4A0.864 (10)C15—C161.384 (4)
N5—C141.374 (4)C15—C201.388 (4)
N5—C131.389 (4)C16—C171.381 (4)
N5—H5A0.857 (10)C16—H16A0.9300
C1—C21.378 (5)C17—C181.369 (4)
C1—C61.385 (4)C17—H17A0.9300
C1—H1B0.9300C18—C191.389 (5)
C2—C31.378 (5)C19—C201.369 (4)
C2—H2B0.9300C19—H19A0.9300
C3—C41.355 (5)C20—H20A0.9300
C4—C51.370 (4)
C8—N1—C7117.8 (3)N3—C10—C9102.4 (3)
C8—N2—C9112.4 (3)N3—C10—H10A111.3
C8—N2—H2A115 (3)C9—C10—H10A111.3
C9—N2—H2A131 (3)N3—C10—H10B111.3
C8—N3—C10111.9 (3)C9—C10—H10B111.3
C8—N3—C11125.5 (3)H10A—C10—H10B109.2
C10—N3—C11122.3 (3)N3—C11—C12113.1 (3)
C13—N4—C12125.8 (3)N3—C11—H11A109.0
C13—N4—H4A112 (2)C12—C11—H11A109.0
C12—N4—H4A118 (2)N3—C11—H11B109.0
C14—N5—C13127.0 (3)C12—C11—H11B109.0
C14—N5—H5A117 (3)H11A—C11—H11B107.8
C13—N5—H5A116 (3)N4—C12—C11110.7 (3)
C2—C1—C6122.1 (3)N4—C12—H12A109.5
C2—C1—H1B119.0C11—C12—H12A109.5
C6—C1—H1B119.0N4—C12—H12B109.5
C3—C2—C1118.2 (3)C11—C12—H12B109.5
C3—C2—H2B120.9H12A—C12—H12B108.1
C1—C2—H2B120.9N4—C13—N5115.3 (3)
C4—C3—C2121.4 (3)N4—C13—S1125.5 (2)
C4—C3—Cl1120.6 (3)N5—C13—S1119.3 (2)
C2—C3—Cl1118.0 (3)O2—C14—N5123.0 (3)
C3—C4—C5120.3 (3)O2—C14—C15120.6 (3)
C3—C4—H4B119.8N5—C14—C15116.3 (3)
C5—C4—H4B119.8C16—C15—C20118.9 (3)
C4—C5—C6120.6 (3)C16—C15—C14122.8 (3)
C4—C5—H5B119.7C20—C15—C14118.0 (3)
C6—C5—H5B119.7C17—C16—C15120.8 (3)
C1—C6—C5117.4 (3)C17—C16—H16A119.6
C1—C6—C7119.7 (3)C15—C16—H16A119.6
C5—C6—C7122.8 (3)C18—C17—C16118.8 (3)
O1—C7—N1127.1 (3)C18—C17—H17A120.6
O1—C7—C6118.7 (3)C16—C17—H17A120.6
N1—C7—C6114.2 (3)C17—C18—C19122.0 (3)
N1—C8—N2130.2 (3)C17—C18—Cl2119.4 (3)
N1—C8—N3121.8 (3)C19—C18—Cl2118.7 (3)
N2—C8—N3107.9 (3)C20—C19—C18118.2 (3)
N2—C9—C10102.7 (3)C20—C19—H19A120.9
N2—C9—H9A111.2C18—C19—H19A120.9
C10—C9—H9A111.2C19—C20—C15121.3 (3)
N2—C9—H9B111.2C19—C20—H20A119.3
C10—C9—H9B111.2C15—C20—H20A119.3
H9A—C9—H9B109.1
C6—C1—C2—C3−0.7 (5)C11—N3—C10—C9173.4 (3)
C1—C2—C3—C40.7 (5)N2—C9—C10—N315.4 (4)
C1—C2—C3—Cl1178.7 (3)C8—N3—C11—C12−99.4 (4)
C2—C3—C4—C5−0.1 (5)C10—N3—C11—C1273.8 (4)
Cl1—C3—C4—C5−178.0 (3)C13—N4—C12—C11−100.0 (4)
C3—C4—C5—C6−0.6 (5)N3—C11—C12—N473.6 (4)
C2—C1—C6—C50.0 (5)C12—N4—C13—N5166.5 (3)
C2—C1—C6—C7180.0 (3)C12—N4—C13—S1−14.0 (5)
C4—C5—C6—C10.6 (4)C14—N5—C13—N4−9.4 (5)
C4—C5—C6—C7−179.4 (3)C14—N5—C13—S1171.1 (3)
C8—N1—C7—O12.4 (5)C13—N5—C14—O216.6 (5)
C8—N1—C7—C6−176.9 (3)C13—N5—C14—C15−161.9 (3)
C1—C6—C7—O1−18.3 (4)O2—C14—C15—C16−149.1 (3)
C5—C6—C7—O1161.6 (3)N5—C14—C15—C1629.5 (5)
C1—C6—C7—N1161.0 (3)O2—C14—C15—C2025.3 (5)
C5—C6—C7—N1−19.0 (4)N5—C14—C15—C20−156.2 (3)
C7—N1—C8—N21.9 (5)C20—C15—C16—C17−0.1 (5)
C7—N1—C8—N3−179.3 (3)C14—C15—C16—C17174.3 (3)
C9—N2—C8—N1−173.8 (3)C15—C16—C17—C180.1 (5)
C9—N2—C8—N37.3 (4)C16—C17—C18—C190.2 (5)
C10—N3—C8—N1−175.0 (3)C16—C17—C18—Cl2−177.9 (2)
C11—N3—C8—N1−1.2 (5)C17—C18—C19—C20−0.6 (5)
C10—N3—C8—N24.0 (4)Cl2—C18—C19—C20177.5 (3)
C11—N3—C8—N2177.8 (3)C18—C19—C20—C150.7 (5)
C8—N2—C9—C10−14.6 (4)C16—C15—C20—C19−0.4 (5)
C8—N3—C10—C9−12.6 (4)C14—C15—C20—C19−174.9 (3)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O10.87 (1)2.00 (4)2.637 (4)130 (4)
N2—H2A···S1i0.87 (1)2.85 (4)3.438 (3)127 (4)
N4—H4A···O20.86 (1)1.87 (2)2.614 (3)143 (3)
N5—H5A···O1ii0.86 (1)2.09 (2)2.898 (4)157 (5)
C17—H17A···O2iii0.932.463.118 (4)128
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2A⋯O10.87 (1)2.00 (4)2.637 (4)130 (4)
N2—H2A⋯S1i 0.87 (1)2.85 (4)3.438 (3)127 (4)
N4—H4A⋯O20.86 (1)1.87 (2)2.614 (3)143 (3)
N5—H5A⋯O1ii 0.86 (1)2.09 (2)2.898 (4)157 (5)
C17—H17A⋯O2iii 0.932.463.118 (4)128

Symmetry codes: (i) ; (ii) ; (iii) .

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