| Literature DB >> 22798883 |
Dalina Adan, Suhaila Sapari, Siti Nadiah Halim, Bohari M Yamin.
Abstract
The title compound, C(20)H(19)Cl(2)N(5)O(2)S, was obtained from the reaction of 4-chloro-benzoyl isothio-cyanate with diethyl-ene-triamine. The imidazolidine ring is slightly twisted with an N-C-C-N torsion angle of 15.4 (4)°, while the thio-urea moiety maintains its trans-cis geometry. The mol-ecule is stabilized by intramolecular N-H⋯O hydrogen bonds. The crystal structure features N-H⋯O, N-H⋯S and C-H⋯O hydrogen bonds and π-π interactions between benzene rings with a centroid-centroid distance of 3.607 (3) Å.Entities:
Year: 2012 PMID: 22798883 PMCID: PMC3394018 DOI: 10.1107/S1600536812028218
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H19Cl2N5O2S | |
| Monoclinic, | Mo |
| Hall symbol: C -2yc | Cell parameters from 2230 reflections |
| θ = 3.1–26.4° | |
| µ = 0.43 mm−1 | |
| β = 97.16 (2)° | Slab, colourless |
| 0.22 × 0.08 × 0.07 mm | |
| Bruker SMART APEX CCD area-detector diffractometer | 4165 independent reflections |
| Radiation source: fine-focus sealed tube | 2855 reflections with |
| Graphite monochromator | |
| Detector resolution: 83.66 pixels mm-1 | θmax = 26.4°, θmin = 3.1° |
| ω scan | |
| Absorption correction: multi-scan ( | |
| 8499 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 4165 reflections | Δρmax = 0.18 e Å−3 |
| 283 parameters | Δρmin = −0.28 e Å−3 |
| 5 restraints | Absolute structure: Flack (1983) ???? Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.06 (6) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Cl1 | 0.84274 (4) | 0.3989 (2) | 0.19364 (9) | 0.0858 (4) | |
| Cl2 | 0.83019 (4) | −0.17344 (19) | 0.37999 (10) | 0.0887 (4) | |
| S1 | 0.47526 (3) | 0.21472 (13) | 0.36669 (7) | 0.0574 (3) | |
| O1 | 0.59035 (9) | 0.0679 (4) | 0.0292 (2) | 0.0654 (7) | |
| O2 | 0.63898 (9) | 0.5325 (3) | 0.35719 (19) | 0.0536 (6) | |
| N1 | 0.56767 (10) | 0.3697 (4) | 0.1039 (2) | 0.0456 (7) | |
| N2 | 0.48754 (11) | 0.1718 (5) | 0.0424 (2) | 0.0564 (8) | |
| H2A | 0.5083 (15) | 0.083 (5) | 0.018 (3) | 0.100 (16)* | |
| N3 | 0.47666 (10) | 0.4668 (4) | 0.1099 (2) | 0.0478 (7) | |
| N4 | 0.53148 (11) | 0.5442 (4) | 0.3285 (2) | 0.0479 (7) | |
| H4A | 0.5640 (7) | 0.584 (5) | 0.319 (3) | 0.053 (10)* | |
| N5 | 0.58290 (10) | 0.2711 (4) | 0.3890 (2) | 0.0426 (6) | |
| H5A | 0.583 (2) | 0.153 (3) | 0.415 (4) | 0.13 (2)* | |
| C1 | 0.70080 (13) | 0.1240 (6) | 0.1077 (3) | 0.0509 (9) | |
| H1B | 0.6892 | −0.0066 | 0.0914 | 0.061* | |
| C2 | 0.75617 (14) | 0.1603 (6) | 0.1344 (3) | 0.0550 (9) | |
| H2B | 0.7817 | 0.0561 | 0.1368 | 0.066* | |
| C3 | 0.77275 (14) | 0.3549 (6) | 0.1573 (3) | 0.0566 (10) | |
| C4 | 0.73592 (13) | 0.5075 (5) | 0.1551 (3) | 0.0534 (9) | |
| H4B | 0.7481 | 0.6377 | 0.1710 | 0.064* | |
| C5 | 0.68087 (14) | 0.4709 (5) | 0.1295 (2) | 0.0496 (8) | |
| H5B | 0.6559 | 0.5764 | 0.1288 | 0.060* | |
| C6 | 0.66193 (13) | 0.2761 (5) | 0.1045 (2) | 0.0434 (8) | |
| C7 | 0.60276 (13) | 0.2283 (5) | 0.0752 (2) | 0.0444 (8) | |
| C8 | 0.51449 (13) | 0.3336 (5) | 0.0849 (2) | 0.0433 (8) | |
| C9 | 0.42894 (14) | 0.2020 (6) | 0.0255 (3) | 0.0606 (9) | |
| H9A | 0.4095 | 0.0871 | 0.0488 | 0.073* | |
| H9B | 0.4164 | 0.2259 | −0.0466 | 0.073* | |
| C10 | 0.42110 (14) | 0.3873 (6) | 0.0898 (3) | 0.0624 (10) | |
| H10A | 0.3964 | 0.4832 | 0.0520 | 0.075* | |
| H10B | 0.4068 | 0.3519 | 0.1532 | 0.075* | |
| C11 | 0.48875 (14) | 0.6591 (5) | 0.1608 (3) | 0.0538 (9) | |
| H11A | 0.4633 | 0.7594 | 0.1294 | 0.065* | |
| H11B | 0.5256 | 0.7006 | 0.1504 | 0.065* | |
| C12 | 0.48476 (14) | 0.6519 (5) | 0.2745 (3) | 0.0516 (9) | |
| H12A | 0.4839 | 0.7878 | 0.3011 | 0.062* | |
| H12B | 0.4509 | 0.5851 | 0.2862 | 0.062* | |
| C13 | 0.53131 (12) | 0.3544 (5) | 0.3597 (2) | 0.0420 (7) | |
| C14 | 0.63297 (12) | 0.3540 (5) | 0.3762 (2) | 0.0412 (7) | |
| C15 | 0.68047 (12) | 0.2137 (5) | 0.3839 (2) | 0.0419 (7) | |
| C16 | 0.67515 (12) | 0.0123 (5) | 0.3578 (2) | 0.0443 (8) | |
| H16A | 0.6403 | −0.0424 | 0.3402 | 0.053* | |
| C17 | 0.72101 (13) | −0.1086 (5) | 0.3576 (3) | 0.0483 (8) | |
| H17A | 0.7173 | −0.2439 | 0.3398 | 0.058* | |
| C18 | 0.77199 (13) | −0.0256 (6) | 0.3840 (3) | 0.0516 (8) | |
| C19 | 0.77881 (13) | 0.1758 (5) | 0.4111 (3) | 0.0524 (8) | |
| H19A | 0.8137 | 0.2295 | 0.4294 | 0.063* | |
| C20 | 0.73277 (12) | 0.2930 (5) | 0.4101 (2) | 0.0473 (8) | |
| H20A | 0.7366 | 0.4285 | 0.4274 | 0.057* |
| Cl1 | 0.0511 (5) | 0.1137 (9) | 0.0944 (8) | −0.0131 (6) | 0.0161 (5) | −0.0142 (7) |
| Cl2 | 0.0558 (6) | 0.0981 (9) | 0.1106 (9) | 0.0265 (6) | 0.0045 (5) | −0.0239 (8) |
| S1 | 0.0419 (4) | 0.0488 (5) | 0.0824 (7) | 0.0017 (4) | 0.0109 (4) | 0.0106 (5) |
| O1 | 0.0544 (13) | 0.0527 (15) | 0.0894 (19) | −0.0025 (11) | 0.0106 (12) | −0.0293 (14) |
| O2 | 0.0536 (13) | 0.0330 (13) | 0.0734 (17) | −0.0069 (10) | 0.0045 (11) | 0.0035 (12) |
| N1 | 0.0427 (15) | 0.0405 (16) | 0.0538 (18) | 0.0054 (12) | 0.0067 (13) | −0.0050 (13) |
| N2 | 0.0456 (16) | 0.0532 (19) | 0.071 (2) | 0.0027 (14) | 0.0082 (14) | −0.0145 (16) |
| N3 | 0.0490 (15) | 0.0394 (16) | 0.0549 (18) | 0.0093 (12) | 0.0058 (13) | −0.0024 (14) |
| N4 | 0.0479 (16) | 0.0333 (15) | 0.0626 (19) | 0.0049 (12) | 0.0068 (14) | 0.0006 (13) |
| N5 | 0.0381 (14) | 0.0378 (15) | 0.0518 (17) | 0.0011 (12) | 0.0055 (12) | 0.0054 (14) |
| C1 | 0.054 (2) | 0.050 (2) | 0.049 (2) | 0.0073 (16) | 0.0064 (16) | −0.0063 (17) |
| C2 | 0.053 (2) | 0.065 (2) | 0.049 (2) | 0.0126 (17) | 0.0112 (16) | −0.0059 (19) |
| C3 | 0.050 (2) | 0.074 (3) | 0.047 (2) | −0.0066 (19) | 0.0136 (17) | −0.004 (2) |
| C4 | 0.056 (2) | 0.049 (2) | 0.058 (2) | −0.0078 (17) | 0.0134 (17) | −0.0080 (18) |
| C5 | 0.059 (2) | 0.046 (2) | 0.046 (2) | 0.0006 (16) | 0.0140 (16) | −0.0008 (16) |
| C6 | 0.0538 (19) | 0.044 (2) | 0.0344 (19) | 0.0026 (15) | 0.0130 (15) | −0.0008 (15) |
| C7 | 0.0492 (18) | 0.0414 (19) | 0.043 (2) | 0.0021 (14) | 0.0071 (15) | −0.0056 (16) |
| C8 | 0.0509 (19) | 0.0421 (19) | 0.0378 (18) | 0.0025 (15) | 0.0090 (15) | −0.0011 (15) |
| C9 | 0.0486 (19) | 0.062 (2) | 0.072 (3) | −0.0022 (16) | 0.0121 (18) | −0.008 (2) |
| C10 | 0.048 (2) | 0.068 (3) | 0.070 (3) | 0.0153 (17) | 0.0064 (18) | −0.003 (2) |
| C11 | 0.061 (2) | 0.0326 (18) | 0.068 (3) | 0.0122 (15) | 0.0082 (18) | 0.0048 (17) |
| C12 | 0.063 (2) | 0.0361 (19) | 0.055 (2) | 0.0175 (15) | 0.0035 (17) | −0.0065 (16) |
| C13 | 0.0421 (16) | 0.0401 (19) | 0.044 (2) | 0.0069 (13) | 0.0053 (14) | −0.0033 (15) |
| C14 | 0.0422 (17) | 0.0419 (19) | 0.0393 (19) | −0.0029 (14) | 0.0041 (13) | −0.0008 (16) |
| C15 | 0.0432 (16) | 0.0407 (18) | 0.0420 (19) | −0.0046 (13) | 0.0060 (14) | 0.0014 (15) |
| C16 | 0.0411 (16) | 0.0443 (19) | 0.048 (2) | −0.0046 (14) | 0.0074 (14) | 0.0008 (16) |
| C17 | 0.0473 (18) | 0.0401 (18) | 0.058 (2) | −0.0011 (15) | 0.0101 (16) | −0.0010 (17) |
| C18 | 0.0441 (17) | 0.060 (2) | 0.051 (2) | 0.0098 (16) | 0.0082 (15) | −0.0001 (18) |
| C19 | 0.0387 (17) | 0.059 (2) | 0.058 (2) | −0.0068 (16) | 0.0023 (15) | −0.0031 (19) |
| C20 | 0.0448 (18) | 0.0454 (19) | 0.051 (2) | −0.0051 (15) | 0.0033 (15) | −0.0003 (16) |
| Cl1—C3 | 1.745 (4) | C4—H4B | 0.9300 |
| Cl2—C18 | 1.737 (3) | C5—C6 | 1.400 (4) |
| S1—C13 | 1.669 (3) | C5—H5B | 0.9300 |
| O1—C7 | 1.243 (4) | C6—C7 | 1.486 (4) |
| O2—C14 | 1.224 (3) | C9—C10 | 1.518 (5) |
| N1—C8 | 1.317 (4) | C9—H9A | 0.9700 |
| N1—C7 | 1.358 (4) | C9—H9B | 0.9700 |
| N2—C8 | 1.346 (4) | C10—H10A | 0.9700 |
| N2—C9 | 1.438 (4) | C10—H10B | 0.9700 |
| N2—H2A | 0.865 (10) | C11—C12 | 1.505 (5) |
| N3—C8 | 1.351 (4) | C11—H11A | 0.9700 |
| N3—C10 | 1.453 (4) | C11—H11B | 0.9700 |
| N3—C11 | 1.455 (4) | C12—H12A | 0.9700 |
| N4—C13 | 1.326 (4) | C12—H12B | 0.9700 |
| N4—C12 | 1.456 (4) | C14—C15 | 1.484 (4) |
| N4—H4A | 0.864 (10) | C15—C16 | 1.384 (4) |
| N5—C14 | 1.374 (4) | C15—C20 | 1.388 (4) |
| N5—C13 | 1.389 (4) | C16—C17 | 1.381 (4) |
| N5—H5A | 0.857 (10) | C16—H16A | 0.9300 |
| C1—C2 | 1.378 (5) | C17—C18 | 1.369 (4) |
| C1—C6 | 1.385 (4) | C17—H17A | 0.9300 |
| C1—H1B | 0.9300 | C18—C19 | 1.389 (5) |
| C2—C3 | 1.378 (5) | C19—C20 | 1.369 (4) |
| C2—H2B | 0.9300 | C19—H19A | 0.9300 |
| C3—C4 | 1.355 (5) | C20—H20A | 0.9300 |
| C4—C5 | 1.370 (4) | ||
| C8—N1—C7 | 117.8 (3) | N3—C10—C9 | 102.4 (3) |
| C8—N2—C9 | 112.4 (3) | N3—C10—H10A | 111.3 |
| C8—N2—H2A | 115 (3) | C9—C10—H10A | 111.3 |
| C9—N2—H2A | 131 (3) | N3—C10—H10B | 111.3 |
| C8—N3—C10 | 111.9 (3) | C9—C10—H10B | 111.3 |
| C8—N3—C11 | 125.5 (3) | H10A—C10—H10B | 109.2 |
| C10—N3—C11 | 122.3 (3) | N3—C11—C12 | 113.1 (3) |
| C13—N4—C12 | 125.8 (3) | N3—C11—H11A | 109.0 |
| C13—N4—H4A | 112 (2) | C12—C11—H11A | 109.0 |
| C12—N4—H4A | 118 (2) | N3—C11—H11B | 109.0 |
| C14—N5—C13 | 127.0 (3) | C12—C11—H11B | 109.0 |
| C14—N5—H5A | 117 (3) | H11A—C11—H11B | 107.8 |
| C13—N5—H5A | 116 (3) | N4—C12—C11 | 110.7 (3) |
| C2—C1—C6 | 122.1 (3) | N4—C12—H12A | 109.5 |
| C2—C1—H1B | 119.0 | C11—C12—H12A | 109.5 |
| C6—C1—H1B | 119.0 | N4—C12—H12B | 109.5 |
| C3—C2—C1 | 118.2 (3) | C11—C12—H12B | 109.5 |
| C3—C2—H2B | 120.9 | H12A—C12—H12B | 108.1 |
| C1—C2—H2B | 120.9 | N4—C13—N5 | 115.3 (3) |
| C4—C3—C2 | 121.4 (3) | N4—C13—S1 | 125.5 (2) |
| C4—C3—Cl1 | 120.6 (3) | N5—C13—S1 | 119.3 (2) |
| C2—C3—Cl1 | 118.0 (3) | O2—C14—N5 | 123.0 (3) |
| C3—C4—C5 | 120.3 (3) | O2—C14—C15 | 120.6 (3) |
| C3—C4—H4B | 119.8 | N5—C14—C15 | 116.3 (3) |
| C5—C4—H4B | 119.8 | C16—C15—C20 | 118.9 (3) |
| C4—C5—C6 | 120.6 (3) | C16—C15—C14 | 122.8 (3) |
| C4—C5—H5B | 119.7 | C20—C15—C14 | 118.0 (3) |
| C6—C5—H5B | 119.7 | C17—C16—C15 | 120.8 (3) |
| C1—C6—C5 | 117.4 (3) | C17—C16—H16A | 119.6 |
| C1—C6—C7 | 119.7 (3) | C15—C16—H16A | 119.6 |
| C5—C6—C7 | 122.8 (3) | C18—C17—C16 | 118.8 (3) |
| O1—C7—N1 | 127.1 (3) | C18—C17—H17A | 120.6 |
| O1—C7—C6 | 118.7 (3) | C16—C17—H17A | 120.6 |
| N1—C7—C6 | 114.2 (3) | C17—C18—C19 | 122.0 (3) |
| N1—C8—N2 | 130.2 (3) | C17—C18—Cl2 | 119.4 (3) |
| N1—C8—N3 | 121.8 (3) | C19—C18—Cl2 | 118.7 (3) |
| N2—C8—N3 | 107.9 (3) | C20—C19—C18 | 118.2 (3) |
| N2—C9—C10 | 102.7 (3) | C20—C19—H19A | 120.9 |
| N2—C9—H9A | 111.2 | C18—C19—H19A | 120.9 |
| C10—C9—H9A | 111.2 | C19—C20—C15 | 121.3 (3) |
| N2—C9—H9B | 111.2 | C19—C20—H20A | 119.3 |
| C10—C9—H9B | 111.2 | C15—C20—H20A | 119.3 |
| H9A—C9—H9B | 109.1 | ||
| C6—C1—C2—C3 | −0.7 (5) | C11—N3—C10—C9 | 173.4 (3) |
| C1—C2—C3—C4 | 0.7 (5) | N2—C9—C10—N3 | 15.4 (4) |
| C1—C2—C3—Cl1 | 178.7 (3) | C8—N3—C11—C12 | −99.4 (4) |
| C2—C3—C4—C5 | −0.1 (5) | C10—N3—C11—C12 | 73.8 (4) |
| Cl1—C3—C4—C5 | −178.0 (3) | C13—N4—C12—C11 | −100.0 (4) |
| C3—C4—C5—C6 | −0.6 (5) | N3—C11—C12—N4 | 73.6 (4) |
| C2—C1—C6—C5 | 0.0 (5) | C12—N4—C13—N5 | 166.5 (3) |
| C2—C1—C6—C7 | 180.0 (3) | C12—N4—C13—S1 | −14.0 (5) |
| C4—C5—C6—C1 | 0.6 (4) | C14—N5—C13—N4 | −9.4 (5) |
| C4—C5—C6—C7 | −179.4 (3) | C14—N5—C13—S1 | 171.1 (3) |
| C8—N1—C7—O1 | 2.4 (5) | C13—N5—C14—O2 | 16.6 (5) |
| C8—N1—C7—C6 | −176.9 (3) | C13—N5—C14—C15 | −161.9 (3) |
| C1—C6—C7—O1 | −18.3 (4) | O2—C14—C15—C16 | −149.1 (3) |
| C5—C6—C7—O1 | 161.6 (3) | N5—C14—C15—C16 | 29.5 (5) |
| C1—C6—C7—N1 | 161.0 (3) | O2—C14—C15—C20 | 25.3 (5) |
| C5—C6—C7—N1 | −19.0 (4) | N5—C14—C15—C20 | −156.2 (3) |
| C7—N1—C8—N2 | 1.9 (5) | C20—C15—C16—C17 | −0.1 (5) |
| C7—N1—C8—N3 | −179.3 (3) | C14—C15—C16—C17 | 174.3 (3) |
| C9—N2—C8—N1 | −173.8 (3) | C15—C16—C17—C18 | 0.1 (5) |
| C9—N2—C8—N3 | 7.3 (4) | C16—C17—C18—C19 | 0.2 (5) |
| C10—N3—C8—N1 | −175.0 (3) | C16—C17—C18—Cl2 | −177.9 (2) |
| C11—N3—C8—N1 | −1.2 (5) | C17—C18—C19—C20 | −0.6 (5) |
| C10—N3—C8—N2 | 4.0 (4) | Cl2—C18—C19—C20 | 177.5 (3) |
| C11—N3—C8—N2 | 177.8 (3) | C18—C19—C20—C15 | 0.7 (5) |
| C8—N2—C9—C10 | −14.6 (4) | C16—C15—C20—C19 | −0.4 (5) |
| C8—N3—C10—C9 | −12.6 (4) | C14—C15—C20—C19 | −174.9 (3) |
| H··· | ||||
| N2—H2 | 0.87 (1) | 2.00 (4) | 2.637 (4) | 130 (4) |
| N2—H2 | 0.87 (1) | 2.85 (4) | 3.438 (3) | 127 (4) |
| N4—H4 | 0.86 (1) | 1.87 (2) | 2.614 (3) | 143 (3) |
| N5—H5 | 0.86 (1) | 2.09 (2) | 2.898 (4) | 157 (5) |
| C17—H17 | 0.93 | 2.46 | 3.118 (4) | 128 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H2 | 0.87 (1) | 2.00 (4) | 2.637 (4) | 130 (4) |
| N2—H2 | 0.87 (1) | 2.85 (4) | 3.438 (3) | 127 (4) |
| N4—H4 | 0.86 (1) | 1.87 (2) | 2.614 (3) | 143 (3) |
| N5—H5 | 0.86 (1) | 2.09 (2) | 2.898 (4) | 157 (5) |
| C17—H17 | 0.93 | 2.46 | 3.118 (4) | 128 |
Symmetry codes: (i) ; (ii) ; (iii) .