Propane-1,2-diammonium bis-(6-carboxy-pyridine-2-carboxyl-ate) dihydrate.

The reaction of propane-1,2-diamine (pn) and pyridine-2,6-dicarboxylic acid (pydcH(2)) in a 1:2 molar ratio in aqueous solution resulted in the formation of the title compound, C(3)H(12)N(2) (2+)·2C(7)H(4)NO(4)·2H(2)O or (pnH(2))(pydcH)(2)·2H(2)O. The structure contains two monoanionic deprotonated forms of pyridine-2,6-dicarboxylic acid molecules (pydcH)(-), a diprotonated propane-1,2-diamine (pnH(2))(2+), and two water mol-ecules. A significant π-π stacking inter-action is observed between the pyridyl rings of the (pydcH)(-) fragments, with a face-to-face distance of 3.6194 (9) Å. In the crystal structure, a wide range of non-covalent inter-actions consisting of ion pairing, hydrogen bonding [of the types of O-H⋯O, N-H⋯O, N-H⋯N and C-H⋯O, with D⋯A distances in the range 2.454 (2)-3.222 (2)Å] and π-π stacking inter-actions [centroid-centroid distance = 3.6194 (9) Å] connect the components into a supra-molecular structure.

Related literature

For related literature, see: Aghabozorg et al. (2007 ▶, 2008 ▶); Aghabozorg, Ghadermazi & Attar Gharamaleki (2006 ▶); Aghabozorg, Ghadermazi & Ramezanipour (2006 ▶).

Experimental

Crystal data

C3H12N2 2+·2C7H4NO4 −·2H2O

M = 444.40

Triclinic,

a = 7.5587 (3) Å

b = 11.0388 (5) Å

c = 12.5821 (6) Å

α = 98.533 (1)°

β = 99.844 (1)°

γ = 106.410 (1)°

V = 970.52 (7) Å3

Z = 2

Mo Kα radiation

μ = 0.13 mm−1

T = 100 (2) K

0.11 × 0.10 × 0.06 mm

Data collection

Bruker SMART APEXII diffractometer

Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.984, T max = 0.993

10335 measured reflections

4242 independent reflections

3220 reflections with I > 2σ(I)

R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.040

wR(F 2) = 0.104

S = 1.04

4242 reflections

280 parameters

H-atom parameters constrained

Δρmax = 0.36 e Å−3

Δρmin = −0.34 e Å−3

Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: APEX2; data reduction: APEX2; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97.

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808013263/om2231sup1.cif

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808013263/om2231Isup2.hkl

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

C3H12N22+·2C7H4NO4–·2(H2O)	Z = 2
Mr = 444.40	F000 = 468
Triclinic, P1	Dx = 1.521 Mg m−3
a = 7.5587 (3) Å	Mo Kα radiation λ = 0.71073 Å
b = 11.0388 (5) Å	Cell parameters from 2295 reflections
c = 12.5821 (6) Å	θ = 3–27º
α = 98.533 (1)º	µ = 0.13 mm−1
β = 99.844 (1)º	T = 100 (2) K
γ = 106.410 (1)º	Prism, light yellow
V = 970.52 (7) Å3	0.11 × 0.10 × 0.06 mm

Bruker SMART APEXII diffractometer	4242 independent reflections
Radiation source: fine-focus sealed tube	3220 reflections with I > 2σ(I)
Monochromator: graphite	Rint = 0.033
T = 100(2) K	θmax = 27.0º
φ and ω scans	θmin = 1.7º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)	h = −9→9
Tmin = 0.984, Tmax = 0.993	k = −14→14
10335 measured reflections	l = −16→16

Refinement on F2	Secondary atom site location: difference Fourier map
Least-squares matrix: full	Hydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.040	H-atom parameters constrained
wR(F2) = 0.104	w = 1/[σ2(Fo2) + (0.05P)2 + 0.22P] where P = (Fo2 + 2Fc2)/3
S = 1.04	(Δ/σ)max < 0.001
4242 reflections	Δρmax = 0.36 e Å−3
280 parameters	Δρmin = −0.34 e Å−3
Primary atom site location: structure-invariant direct methods	Extinction correction: none

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

	x	y	z	Uiso*/Ueq
O1	0.30330 (16)	0.96417 (11)	0.10525 (9)	0.0158 (3)
H1	0.2728	1.0122	0.0610	0.019*
O2	0.12513 (17)	0.79720 (11)	−0.03137 (9)	0.0171 (3)
O3	0.62921 (18)	0.89335 (11)	0.43063 (10)	0.0234 (3)
O4	0.58090 (17)	0.69734 (11)	0.46855 (9)	0.0176 (3)
N1	0.38792 (19)	0.80055 (12)	0.23258 (11)	0.0117 (3)
C1	0.4249 (2)	0.71578 (15)	0.29333 (13)	0.0120 (3)
C2	0.3517 (2)	0.58307 (15)	0.25576 (13)	0.0139 (3)
H2C	0.3769	0.5267	0.3023	0.017*
C3	0.2419 (2)	0.53364 (16)	0.14993 (14)	0.0150 (3)
H3A	0.1918	0.4431	0.1220	0.018*
C4	0.2069 (2)	0.61941 (16)	0.08566 (14)	0.0145 (3)
H4A	0.1350	0.5888	0.0118	0.017*
C5	0.2784 (2)	0.75089 (15)	0.13067 (13)	0.0117 (3)
C6	0.2292 (2)	0.84218 (15)	0.06044 (13)	0.0126 (3)
C7	0.5543 (2)	0.77185 (15)	0.40738 (14)	0.0139 (3)
O5	−0.17333 (17)	0.01198 (11)	0.61266 (10)	0.0175 (3)
H5	−0.2412	−0.0312	0.5480	0.021*
O6	−0.18863 (17)	0.17699 (11)	0.53087 (9)	0.0180 (3)
O7	0.41198 (17)	0.28482 (12)	1.04946 (10)	0.0210 (3)
O8	0.20387 (17)	0.08880 (11)	0.97111 (9)	0.0171 (3)
N2	0.08176 (19)	0.17610 (13)	0.79041 (11)	0.0114 (3)
C8	0.0191 (2)	0.22487 (15)	0.70500 (13)	0.0121 (3)
C9	0.0797 (2)	0.35514 (16)	0.70194 (13)	0.0138 (3)
H9A	0.0317	0.3853	0.6397	0.017*
C10	0.2115 (2)	0.44020 (16)	0.79162 (14)	0.0154 (4)
H10A	0.2559	0.5299	0.7923	0.019*
C11	0.2769 (2)	0.39153 (16)	0.87986 (13)	0.0139 (3)
H11A	0.3670	0.4478	0.9425	0.017*
C12	0.2104 (2)	0.26003 (15)	0.87667 (13)	0.0111 (3)
C13	−0.1263 (2)	0.13271 (15)	0.60740 (13)	0.0130 (3)
C14	0.2828 (2)	0.20755 (15)	0.97451 (13)	0.0132 (3)
N3	0.41675 (19)	0.91821 (13)	0.68441 (11)	0.0129 (3)
H3B	0.5070	0.9960	0.6940	0.019*
H3C	0.3499	0.8938	0.6132	0.019*
H3D	0.4730	0.8583	0.7004	0.019*
C15	0.2867 (2)	0.92892 (17)	0.75906 (14)	0.0180 (4)
H15A	0.2953	1.0207	0.7806	0.022*
H15B	0.3282	0.8996	0.8269	0.022*
C16	0.0823 (2)	0.85019 (15)	0.70690 (14)	0.0145 (3)
H16A	0.0451	0.8752	0.6352	0.017*
C17	0.0413 (3)	0.70574 (17)	0.68557 (16)	0.0230 (4)
H17A	−0.0931	0.6631	0.6510	0.034*
H17B	0.0719	0.6791	0.7555	0.034*
H17C	0.1184	0.6812	0.6363	0.034*
N4	−0.03197 (19)	0.88970 (13)	0.78355 (11)	0.0130 (3)
H4B	−0.1564	0.8435	0.7566	0.019*
H4C	−0.0168	0.9754	0.7894	0.019*
H4D	0.0078	0.8743	0.8512	0.019*
O1W	0.41860 (16)	0.26610 (11)	0.25748 (9)	0.0162 (3)
H1B	0.4897	0.3358	0.3049	0.019*
H1A	0.4198	0.2719	0.1894	0.019*
O2W	0.33952 (17)	0.54108 (12)	0.57226 (10)	0.0204 (3)
H2B	0.3933	0.5814	0.5260	0.024*
H2A	0.3485	0.4636	0.5598	0.024*

	U11	U22	U33	U12	U13	U23
O1	0.0200 (6)	0.0109 (6)	0.0138 (6)	0.0032 (5)	−0.0022 (5)	0.0045 (5)
O2	0.0199 (6)	0.0167 (6)	0.0112 (6)	0.0044 (5)	−0.0032 (5)	0.0026 (5)
O3	0.0325 (8)	0.0109 (6)	0.0166 (6)	0.0008 (5)	−0.0103 (6)	0.0018 (5)
O4	0.0226 (7)	0.0144 (6)	0.0135 (6)	0.0041 (5)	−0.0012 (5)	0.0055 (5)
N1	0.0114 (7)	0.0118 (7)	0.0106 (6)	0.0026 (5)	0.0014 (5)	0.0020 (5)
C1	0.0105 (8)	0.0130 (8)	0.0126 (8)	0.0033 (6)	0.0029 (6)	0.0030 (6)
C2	0.0152 (8)	0.0120 (8)	0.0155 (8)	0.0053 (6)	0.0027 (7)	0.0049 (6)
C3	0.0156 (8)	0.0108 (8)	0.0170 (8)	0.0032 (6)	0.0030 (7)	0.0005 (6)
C4	0.0133 (8)	0.0151 (8)	0.0125 (8)	0.0040 (7)	0.0001 (6)	−0.0002 (6)
C5	0.0092 (7)	0.0131 (8)	0.0125 (8)	0.0029 (6)	0.0024 (6)	0.0028 (6)
C6	0.0102 (8)	0.0153 (8)	0.0120 (8)	0.0030 (6)	0.0030 (6)	0.0029 (6)
C7	0.0156 (8)	0.0120 (8)	0.0139 (8)	0.0047 (6)	0.0024 (7)	0.0025 (6)
O5	0.0208 (6)	0.0129 (6)	0.0130 (6)	0.0027 (5)	−0.0052 (5)	0.0006 (5)
O6	0.0221 (7)	0.0159 (6)	0.0121 (6)	0.0045 (5)	−0.0040 (5)	0.0030 (5)
O7	0.0225 (7)	0.0188 (7)	0.0135 (6)	−0.0003 (5)	−0.0056 (5)	0.0032 (5)
O8	0.0211 (6)	0.0132 (6)	0.0144 (6)	0.0040 (5)	−0.0017 (5)	0.0042 (5)
N2	0.0108 (7)	0.0140 (7)	0.0094 (6)	0.0042 (5)	0.0017 (5)	0.0020 (5)
C8	0.0110 (8)	0.0145 (8)	0.0106 (8)	0.0045 (6)	0.0023 (6)	0.0015 (6)
C9	0.0138 (8)	0.0164 (9)	0.0128 (8)	0.0052 (7)	0.0035 (6)	0.0058 (6)
C10	0.0156 (8)	0.0123 (8)	0.0184 (9)	0.0035 (7)	0.0041 (7)	0.0046 (6)
C11	0.0111 (8)	0.0142 (8)	0.0133 (8)	0.0016 (6)	0.0011 (6)	−0.0001 (6)
C12	0.0096 (7)	0.0125 (8)	0.0110 (8)	0.0031 (6)	0.0033 (6)	0.0014 (6)
C13	0.0137 (8)	0.0140 (8)	0.0118 (8)	0.0053 (6)	0.0027 (6)	0.0027 (6)
C14	0.0144 (8)	0.0132 (8)	0.0128 (8)	0.0054 (7)	0.0035 (7)	0.0024 (6)
N3	0.0131 (7)	0.0123 (7)	0.0127 (7)	0.0035 (5)	0.0014 (6)	0.0032 (5)
C15	0.0154 (9)	0.0192 (9)	0.0162 (8)	0.0026 (7)	0.0038 (7)	−0.0004 (7)
C16	0.0136 (8)	0.0149 (8)	0.0144 (8)	0.0044 (7)	0.0029 (7)	0.0013 (6)
C17	0.0234 (10)	0.0160 (9)	0.0278 (10)	0.0036 (7)	0.0090 (8)	0.0007 (7)
N4	0.0129 (7)	0.0123 (7)	0.0121 (7)	0.0033 (5)	0.0003 (5)	0.0019 (5)
O1W	0.0175 (6)	0.0152 (6)	0.0134 (6)	0.0030 (5)	0.0006 (5)	0.0027 (5)
O2W	0.0261 (7)	0.0168 (6)	0.0190 (6)	0.0065 (5)	0.0062 (5)	0.0051 (5)

O1—C6	1.2982 (19)	C9—H9A	0.9500
O1—H1	0.8700	C10—C11	1.380 (2)
O2—C6	1.2239 (19)	C10—H10A	0.9500
O3—C7	1.266 (2)	C11—C12	1.387 (2)
O4—C7	1.240 (2)	C11—H11A	0.9500
N1—C5	1.343 (2)	C12—C14	1.520 (2)
N1—C1	1.351 (2)	N3—C15	1.487 (2)
C1—C2	1.387 (2)	N3—H3B	0.9100
C1—C7	1.521 (2)	N3—H3C	0.9100
C2—C3	1.382 (2)	N3—H3D	0.9100
C2—H2C	0.9500	C15—C16	1.516 (2)
C3—C4	1.384 (2)	C15—H15A	0.9900
C3—H3A	0.9500	C15—H15B	0.9900
C4—C5	1.388 (2)	C16—N4	1.496 (2)
C4—H4A	0.9500	C16—C17	1.509 (2)
C5—C6	1.516 (2)	C16—H16A	1.0000
O5—C13	1.2936 (19)	C17—H17A	0.9800
O5—H5	0.8701	C17—H17B	0.9800
O6—C13	1.2260 (19)	C17—H17C	0.9800
O7—C14	1.244 (2)	N4—H4B	0.9100
O8—C14	1.2684 (19)	N4—H4C	0.9100
N2—C8	1.346 (2)	N4—H4D	0.9100
N2—C12	1.347 (2)	O1W—H1B	0.8700
C8—C9	1.389 (2)	O1W—H1A	0.8699
C8—C13	1.512 (2)	O2W—H2B	0.8700
C9—C10	1.386 (2)	O2W—H2A	0.8700
C6—O1—H1	111.7	C11—C12—C14	119.22 (14)
C5—N1—C1	116.90 (13)	O6—C13—O5	125.65 (15)
N1—C1—C2	122.99 (15)	O6—C13—C8	118.45 (14)
N1—C1—C7	117.01 (14)	O5—C13—C8	115.90 (14)
C2—C1—C7	119.99 (14)	O7—C14—O8	126.73 (15)
C3—C2—C1	119.31 (15)	O7—C14—C12	117.09 (14)
C3—C2—H2C	120.3	O8—C14—C12	116.18 (14)
C1—C2—H2C	120.3	C15—N3—H3B	109.5
C2—C3—C4	118.32 (15)	C15—N3—H3C	109.5
C2—C3—H3A	120.8	H3B—N3—H3C	109.5
C4—C3—H3A	120.8	C15—N3—H3D	109.5
C3—C4—C5	119.02 (15)	H3B—N3—H3D	109.5
C3—C4—H4A	120.5	H3C—N3—H3D	109.5
C5—C4—H4A	120.5	N3—C15—C16	112.99 (14)
N1—C5—C4	123.36 (15)	N3—C15—H15A	109.0
N1—C5—C6	118.79 (14)	C16—C15—H15A	109.0
C4—C5—C6	117.85 (14)	N3—C15—H15B	109.0
O2—C6—O1	125.56 (15)	C16—C15—H15B	109.0
O2—C6—C5	119.01 (14)	H15A—C15—H15B	107.8
O1—C6—C5	115.43 (13)	N4—C16—C17	110.23 (14)
O4—C7—O3	125.45 (15)	N4—C16—C15	106.01 (13)
O4—C7—C1	118.87 (14)	C17—C16—C15	115.19 (15)
O3—C7—C1	115.66 (14)	N4—C16—H16A	108.4
C13—O5—H5	106.7	C17—C16—H16A	108.4
C8—N2—C12	117.06 (14)	C15—C16—H16A	108.4
N2—C8—C9	123.62 (15)	C16—C17—H17A	109.5
N2—C8—C13	118.08 (14)	C16—C17—H17B	109.5
C9—C8—C13	118.30 (14)	H17A—C17—H17B	109.5
C10—C9—C8	118.53 (15)	C16—C17—H17C	109.5
C10—C9—H9A	120.7	H17A—C17—H17C	109.5
C8—C9—H9A	120.7	H17B—C17—H17C	109.5
C11—C10—C9	118.47 (15)	C16—N4—H4B	109.5
C11—C10—H10A	120.8	C16—N4—H4C	109.5
C9—C10—H10A	120.8	H4B—N4—H4C	109.5
C10—C11—C12	119.66 (15)	C16—N4—H4D	109.5
C10—C11—H11A	120.2	H4B—N4—H4D	109.5
C12—C11—H11A	120.2	H4C—N4—H4D	109.5
N2—C12—C11	122.65 (15)	H1B—O1W—H1A	113.3
N2—C12—C14	118.13 (14)	H2B—O2W—H2A	106.8
C5—N1—C1—C2	−1.5 (2)	C12—N2—C8—C13	−179.63 (14)
C5—N1—C1—C7	178.02 (14)	N2—C8—C9—C10	−0.2 (2)
N1—C1—C2—C3	2.7 (3)	C13—C8—C9—C10	179.40 (15)
C7—C1—C2—C3	−176.84 (15)	C8—C9—C10—C11	0.1 (2)
C1—C2—C3—C4	−0.9 (2)	C9—C10—C11—C12	0.2 (2)
C2—C3—C4—C5	−1.8 (2)	C8—N2—C12—C11	0.4 (2)
C1—N1—C5—C4	−1.4 (2)	C8—N2—C12—C14	179.70 (14)
C1—N1—C5—C6	178.54 (14)	C10—C11—C12—N2	−0.5 (2)
C3—C4—C5—N1	3.1 (3)	C10—C11—C12—C14	−179.77 (15)
C3—C4—C5—C6	−176.86 (15)	N2—C8—C13—O6	177.64 (15)
N1—C5—C6—O2	−178.03 (15)	C9—C8—C13—O6	−2.0 (2)
C4—C5—C6—O2	1.9 (2)	N2—C8—C13—O5	−2.6 (2)
N1—C5—C6—O1	1.7 (2)	C9—C8—C13—O5	177.79 (14)
C4—C5—C6—O1	−178.34 (14)	N2—C12—C14—O7	174.56 (15)
N1—C1—C7—O4	175.02 (15)	C11—C12—C14—O7	−6.1 (2)
C2—C1—C7—O4	−5.4 (2)	N2—C12—C14—O8	−5.7 (2)
N1—C1—C7—O3	−6.2 (2)	C11—C12—C14—O8	173.67 (15)
C2—C1—C7—O3	173.32 (15)	N3—C15—C16—N4	−170.15 (13)
C12—N2—C8—C9	−0.1 (2)	N3—C15—C16—C17	67.7 (2)

D—H···A	D—H	H···A	D···A	D—H···A
O1—H1···O8i	0.87	1.61	2.479 (2)	175
O1W—H1A···O7ii	0.87	1.78	2.649 (2)	177
O1W—H1B···O2Wiii	0.87	1.90	2.751 (2)	166
O2W—H2A···O4iii	0.87	2.00	2.855 (2)	169
O2W—H2B···O4	0.87	1.94	2.776 (2)	160
N3—H3B···N1iv	0.91	2.16	2.971 (2)	149
N3—H3C···O6v	0.91	1.92	2.819 (2)	172
N3—H3D···O1Wiii	0.91	1.88	2.790 (2)	176
N4—H4B···O1Wv	0.91	1.97	2.854 (2)	163
N4—H4C···N2vi	0.91	2.13	3.017 (2)	166
N4—H4D···O2vii	0.91	2.01	2.884 (2)	160
O5—H5···O3viii	0.87	1.59	2.454 (2)	178
C16—H16A···O5vi	1.00	2.54	3.182 (2)	122
C16—H16A···O6v	1.00	2.58	3.222 (2)	122

Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A	D—H	H⋯A	D⋯A	D—H⋯A
O1—H1⋯O8i	0.87	1.61	2.479 (2)	175
O1W—H1A⋯O7ii	0.87	1.78	2.649 (2)	177
O1W—H1B⋯O2Wiii	0.87	1.90	2.751 (2)	166
O2W—H2A⋯O4iii	0.87	2.00	2.855 (2)	169
O2W—H2B⋯O4	0.87	1.94	2.776 (2)	160
N3—H3B⋯N1iv	0.91	2.16	2.971 (2)	149
N3—H3C⋯O6v	0.91	1.92	2.819 (2)	172
N3—H3D⋯O1Wiii	0.91	1.88	2.790 (2)	176
N4—H4B⋯O1Wv	0.91	1.97	2.854 (2)	163
N4—H4C⋯N2vi	0.91	2.13	3.017 (2)	166
N4—H4D⋯O2vii	0.91	2.01	2.884 (2)	160
O5—H5⋯O3viii	0.87	1.59	2.454 (2)	178
C16—H16A⋯O5vi	1.00	2.54	3.182 (2)	122
C16—H16A⋯O6v	1.00	2.58	3.222 (2)	122

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) ; (viii) .