Literature DB >> 21582793

2-(Aminocarbonyl)hydrazin-1-ium 6-carboxy-picolinate.

Mohammad Idrees, Shah Mohammad Shadab, Sarvendra Kumar.   

Abstract

In the crystal structure of the title proton-transfer compound, CH(6)N(3)O(+)·C(7)H(4)NO(4) (-), O-H⋯O and N-H⋯O hydrogen bonds are formed respectively between the cations and the anions, each component affording a supra-molecular chain along the c axis. The cation and anion chains are further linked by N-H⋯O and N-H⋯N hydrogen bonds. A π-π inter-action is also observed between the pyridine rings; the inter-planar separation and the centroid-centroid distance are 3.3425 (6) and 4.6256 (11) Å, respectively.

Entities:  

Year:  2009        PMID: 21582793      PMCID: PMC2969516          DOI: 10.1107/S1600536809020601

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Desiraju (1997 ▶); Braga et al. (1998 ▶). For related structures of proton-transfer compounds, see: Moghimi et al. (2002 ▶, 2003 ▶, 2007 ▶); Aghabozorg et al. (2008 ▶); Soleimannejad et al. (2008 ▶).

Experimental

Crystal data

CH6N3O+·C7H4NO4 − M = 242.20 Monoclinic, a = 7.9553 (11) Å b = 14.965 (2) Å c = 8.5510 (11) Å β = 97.305 (2)° V = 1009.7 (2) Å3 Z = 4 Mo Kα radiation μ = 0.13 mm−1 T = 293 K 0.30 × 0.28 × 0.25 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (; Sheldrick, 2004 ▶) T min = 0.961, T max = 0.967 10168 measured reflections 1980 independent reflections 1865 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.102 S = 0.85 1980 reflections 170 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.25 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, Global. DOI: 10.1107/S1600536809020601/is2423sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809020601/is2423Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
CH6N3O+·C7H4NO4F(000) = 504
Mr = 242.20Dx = 1.593 Mg m3
Monoclinic, P21/cMelting point: 475 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 7.9553 (11) ÅCell parameters from 7532 reflections
b = 14.965 (2) Åθ = 2.6–26.0°
c = 8.5510 (11) ŵ = 0.13 mm1
β = 97.305 (2)°T = 293 K
V = 1009.7 (2) Å3Block, colorless
Z = 40.30 × 0.28 × 0.25 mm
Bruker SMART CCD diffractometer1980 independent reflections
Radiation source: fine-focus sealed tube1865 reflections with I > 2σ(I)
graphiteRint = 0.023
phi and ω scansθmax = 26.0°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −9→9
Tmin = 0.961, Tmax = 0.967k = −18→18
10168 measured reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.102H atoms treated by a mixture of independent and constrained refinement
S = 0.85w = 1/[σ2(Fo2) + (0.0606P)2 + 0.7523P] where P = (Fo2 + 2Fc2)/3
1980 reflections(Δ/σ)max < 0.001
170 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.47854 (19)0.35088 (10)0.52831 (17)0.0322 (3)
C20.37085 (18)0.41208 (10)0.41520 (17)0.0312 (3)
C30.2536 (2)0.47012 (12)0.46794 (19)0.0383 (4)
H30.24000.47280.57430.046*
C40.1580 (2)0.52359 (13)0.3594 (2)0.0444 (4)
H40.08050.56390.39190.053*
C50.1785 (2)0.51663 (12)0.2019 (2)0.0400 (4)
H50.11420.55120.12620.048*
C60.29775 (18)0.45658 (10)0.15969 (17)0.0316 (3)
C70.31929 (19)0.44623 (10)−0.01161 (18)0.0325 (3)
C80.99077 (19)0.22252 (10)0.68173 (17)0.0330 (3)
N10.39422 (15)0.40574 (8)0.26364 (14)0.0302 (3)
N20.70619 (16)0.17789 (9)0.68390 (15)0.0335 (3)
H01A0.63080.16920.75090.050*
H01B0.72280.12690.63460.050*
H01C0.66750.21920.61340.050*
N30.86050 (17)0.20697 (11)0.76760 (17)0.0426 (4)
N41.1225 (2)0.26456 (12)0.75923 (19)0.0475 (4)
O10.59699 (15)0.31012 (8)0.47629 (13)0.0395 (3)
O20.44050 (16)0.34339 (9)0.66510 (13)0.0463 (3)
O30.42447 (16)0.38249 (9)−0.03960 (14)0.0448 (3)
O40.24379 (16)0.49243 (8)−0.11360 (14)0.0452 (3)
O50.98177 (14)0.19620 (8)0.54419 (13)0.0407 (3)
H041.205 (3)0.2741 (15)0.711 (3)0.057 (6)*
H061.114 (3)0.2797 (14)0.857 (3)0.054 (6)*
H080.853 (3)0.2351 (14)0.857 (3)0.053 (6)*
H090.429 (3)0.3798 (15)−0.137 (3)0.057 (6)*
U11U22U33U12U13U23
C10.0362 (8)0.0364 (8)0.0250 (7)−0.0052 (6)0.0080 (6)−0.0025 (6)
C20.0300 (7)0.0367 (8)0.0280 (7)−0.0046 (6)0.0081 (6)−0.0038 (6)
C30.0362 (8)0.0488 (9)0.0319 (8)0.0001 (7)0.0116 (6)−0.0065 (7)
C40.0383 (9)0.0506 (10)0.0463 (10)0.0095 (7)0.0132 (7)−0.0057 (8)
C50.0342 (8)0.0458 (9)0.0399 (9)0.0051 (7)0.0040 (7)0.0013 (7)
C60.0292 (7)0.0353 (8)0.0306 (8)−0.0035 (6)0.0046 (6)−0.0012 (6)
C70.0308 (7)0.0361 (8)0.0299 (8)−0.0055 (6)0.0016 (6)0.0002 (6)
C80.0336 (8)0.0387 (8)0.0277 (7)0.0037 (6)0.0078 (6)0.0043 (6)
N10.0303 (6)0.0354 (7)0.0256 (6)−0.0017 (5)0.0065 (5)−0.0016 (5)
N20.0306 (7)0.0398 (7)0.0314 (7)−0.0036 (5)0.0087 (5)0.0008 (5)
N30.0344 (7)0.0675 (10)0.0273 (7)−0.0105 (7)0.0095 (5)−0.0106 (7)
N40.0356 (8)0.0707 (11)0.0383 (8)−0.0115 (7)0.0125 (6)−0.0101 (7)
O10.0437 (7)0.0467 (7)0.0301 (6)0.0099 (5)0.0128 (5)0.0059 (5)
O20.0561 (8)0.0610 (8)0.0245 (6)0.0025 (6)0.0153 (5)0.0014 (5)
O30.0514 (7)0.0597 (8)0.0233 (6)0.0161 (6)0.0053 (5)−0.0021 (5)
O40.0549 (7)0.0471 (7)0.0323 (6)0.0058 (6)0.0009 (5)0.0057 (5)
O50.0393 (6)0.0584 (7)0.0262 (6)−0.0001 (5)0.0107 (4)−0.0009 (5)
C1—O21.2499 (18)C7—O41.2107 (19)
C1—O11.2507 (19)C7—O31.311 (2)
C1—C21.516 (2)C8—O51.2338 (19)
C2—N11.3358 (19)C8—N41.326 (2)
C2—C31.391 (2)C8—N31.364 (2)
C3—C41.379 (2)N2—N31.4090 (19)
C3—H30.9300N2—H01A0.8900
C4—C51.381 (2)N2—H01B0.8900
C4—H40.9300N2—H01C0.8900
C5—C61.387 (2)N3—H080.88 (2)
C5—H50.9300N4—H040.83 (2)
C6—N11.336 (2)N4—H060.88 (2)
C6—C71.504 (2)O3—H090.84 (2)
O2—C1—O1124.90 (15)O4—C7—C6122.35 (15)
O2—C1—C2117.83 (14)O3—C7—C6114.02 (13)
O1—C1—C2117.25 (13)O5—C8—N4125.06 (15)
N1—C2—C3122.73 (15)O5—C8—N3120.18 (15)
N1—C2—C1116.04 (13)N4—C8—N3114.74 (14)
C3—C2—C1121.22 (13)C2—N1—C6117.78 (13)
C4—C3—C2118.65 (15)N3—N2—H01A109.5
C4—C3—H3120.7N3—N2—H01B109.5
C2—C3—H3120.7H01A—N2—H01B109.5
C3—C4—C5119.29 (15)N3—N2—H01C109.5
C3—C4—H4120.4H01A—N2—H01C109.5
C5—C4—H4120.4H01B—N2—H01C109.5
C4—C5—C6118.16 (15)C8—N3—N2116.86 (13)
C4—C5—H5120.9C8—N3—H08121.6 (14)
C6—C5—H5120.9N2—N3—H08116.0 (14)
N1—C6—C5123.36 (14)C8—N4—H04117.1 (16)
N1—C6—C7117.54 (13)C8—N4—H06116.7 (14)
C5—C6—C7119.09 (14)H04—N4—H06126 (2)
O4—C7—O3123.62 (15)C7—O3—H09108.9 (15)
O2—C1—C2—N1−167.83 (14)N1—C6—C7—O4−176.25 (14)
O1—C1—C2—N110.7 (2)C5—C6—C7—O44.7 (2)
O2—C1—C2—C311.3 (2)N1—C6—C7—O34.6 (2)
O1—C1—C2—C3−170.13 (15)C5—C6—C7—O3−174.44 (14)
N1—C2—C3—C4−0.3 (2)C3—C2—N1—C6−1.2 (2)
C1—C2—C3—C4−179.36 (15)C1—C2—N1—C6177.91 (13)
C2—C3—C4—C51.4 (3)C5—C6—N1—C21.6 (2)
C3—C4—C5—C6−1.1 (3)C7—C6—N1—C2−177.39 (13)
C4—C5—C6—N1−0.5 (2)O5—C8—N3—N2−13.1 (2)
C4—C5—C6—C7178.52 (15)N4—C8—N3—N2168.50 (15)
D—H···AD—HH···AD···AD—H···A
N2—H01A···O1i0.892.002.7551 (17)141
N2—H01A···N1i0.892.212.9361 (17)139
N2—H01B···O4ii0.892.042.8781 (19)156
N2—H01C···O10.891.842.7258 (18)176
N4—H04···O2iii0.83 (2)2.22 (2)2.993 (2)155 (2)
N3—H08···O5i0.88 (2)2.06 (2)2.8362 (19)146.2 (19)
N3—H08···O1i0.88 (2)2.49 (2)2.9319 (18)112.0 (16)
O3—H09···O2iv0.84 (2)1.79 (2)2.6109 (16)165 (2)
N4—H06···O5i0.88 (2)2.05 (2)2.869 (2)153.5 (19)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H01A⋯O1i0.892.002.7551 (17)141
N2—H01A⋯N1i0.892.212.9361 (17)139
N2—H01B⋯O4ii0.892.042.8781 (19)156
N2—H01C⋯O10.891.842.7258 (18)176
N4—H04⋯O2iii0.83 (2)2.22 (2)2.993 (2)155 (2)
N3—H08⋯O5i0.88 (2)2.06 (2)2.8362 (19)146.2 (19)
N3—H08⋯O1i0.88 (2)2.49 (2)2.9319 (18)112.0 (16)
O3—H09⋯O2iv0.84 (2)1.79 (2)2.6109 (16)165 (2)
N4—H06⋯O5i0.88 (2)2.05 (2)2.869 (2)153.5 (19)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  5 in total

1.  Crystal Engineering and Organometallic Architecture.

Authors:  Dario Braga; Fabrizia Grepioni; Gautam R. Desiraju
Journal:  Chem Rev       Date:  1998-06-18       Impact factor: 60.622

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  First anionic 1,10-phenanthroline-2,9-dicarboxylate containing metal complex obtained from a novel 1:1 proton-transfer compound: synthesis, characterization, crystal structure, and solution studies.

Authors:  A Moghimi; R Alizadeh; A Shokrollahi; H Aghabozorg; M Shamsipur; A Shockravi
Journal:  Inorg Chem       Date:  2003-03-10       Impact factor: 5.165

4.  Propane-1,2-diammonium bis-(6-carboxy-pyridine-2-carboxyl-ate) dihydrate.

Authors:  Hossein Aghabozorg; Mohammad Heidari; Mohammad Ghadermazi; Jafar Attar Gharamaleki
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-10

5.  Propane-1,3-diaminium-2-carboxy-pyridine-6-carboxyl-ate-pyridine-2,6-dicarboxylic acid-water (1/2/2/8).

Authors:  Janet Soleimannejad; Hossein Aghabozorg; Elham Motyeian; Mohammad Ghadermazi; Jafar Attar Gharamaleki; Harry Adams
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-12
  5 in total
  1 in total

1.  Poly[(6-carboxy-picolinato-κO,N,O)(μ(3)-pyridine-2,6-dicarboxyl-ato-κO,N,O:O:O)dysprosium(III)].

Authors:  Xu Li; Qing-Yang Lian; Qiu-Hui Meng; Yi-Fan Luo; Rong-Hua Zeng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-03
  1 in total

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