| Literature DB >> 21582793 |
Mohammad Idrees, Shah Mohammad Shadab, Sarvendra Kumar.
Abstract
In the crystal structure of the title proton-transfer compound, CH(6)N(3)O(+)·C(7)H(4)NO(4) (-), O-H⋯O and N-H⋯O hydrogen bonds are formed respectively between the cations and the anions, each component affording a supra-molecular chain along the c axis. The cation and anion chains are further linked by N-H⋯O and N-H⋯N hydrogen bonds. A π-π inter-action is also observed between the pyridine rings; the inter-planar separation and the centroid-centroid distance are 3.3425 (6) and 4.6256 (11) Å, respectively.Entities:
Year: 2009 PMID: 21582793 PMCID: PMC2969516 DOI: 10.1107/S1600536809020601
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| CH6N3O+·C7H4NO4− | |
| Monoclinic, | Melting point: 475 K |
| Hall symbol: -P 2ybc | Mo |
| Cell parameters from 7532 reflections | |
| θ = 2.6–26.0° | |
| µ = 0.13 mm−1 | |
| β = 97.305 (2)° | |
| Block, colorless | |
| 0.30 × 0.28 × 0.25 mm |
| Bruker SMART CCD diffractometer | 1980 independent reflections |
| Radiation source: fine-focus sealed tube | 1865 reflections with |
| graphite | |
| phi and ω scans | θmax = 26.0°, θmin = 2.6° |
| Absorption correction: multi-scan ( | |
| 10168 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1980 reflections | (Δ/σ)max < 0.001 |
| 170 parameters | Δρmax = 0.20 e Å−3 |
| 0 restraints | Δρmin = −0.25 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.47854 (19) | 0.35088 (10) | 0.52831 (17) | 0.0322 (3) | |
| C2 | 0.37085 (18) | 0.41208 (10) | 0.41520 (17) | 0.0312 (3) | |
| C3 | 0.2536 (2) | 0.47012 (12) | 0.46794 (19) | 0.0383 (4) | |
| H3 | 0.2400 | 0.4728 | 0.5743 | 0.046* | |
| C4 | 0.1580 (2) | 0.52359 (13) | 0.3594 (2) | 0.0444 (4) | |
| H4 | 0.0805 | 0.5639 | 0.3919 | 0.053* | |
| C5 | 0.1785 (2) | 0.51663 (12) | 0.2019 (2) | 0.0400 (4) | |
| H5 | 0.1142 | 0.5512 | 0.1262 | 0.048* | |
| C6 | 0.29775 (18) | 0.45658 (10) | 0.15969 (17) | 0.0316 (3) | |
| C7 | 0.31929 (19) | 0.44623 (10) | −0.01161 (18) | 0.0325 (3) | |
| C8 | 0.99077 (19) | 0.22252 (10) | 0.68173 (17) | 0.0330 (3) | |
| N1 | 0.39422 (15) | 0.40574 (8) | 0.26364 (14) | 0.0302 (3) | |
| N2 | 0.70619 (16) | 0.17789 (9) | 0.68390 (15) | 0.0335 (3) | |
| H01A | 0.6308 | 0.1692 | 0.7509 | 0.050* | |
| H01B | 0.7228 | 0.1269 | 0.6346 | 0.050* | |
| H01C | 0.6675 | 0.2192 | 0.6134 | 0.050* | |
| N3 | 0.86050 (17) | 0.20697 (11) | 0.76760 (17) | 0.0426 (4) | |
| N4 | 1.1225 (2) | 0.26456 (12) | 0.75923 (19) | 0.0475 (4) | |
| O1 | 0.59699 (15) | 0.31012 (8) | 0.47629 (13) | 0.0395 (3) | |
| O2 | 0.44050 (16) | 0.34339 (9) | 0.66510 (13) | 0.0463 (3) | |
| O3 | 0.42447 (16) | 0.38249 (9) | −0.03960 (14) | 0.0448 (3) | |
| O4 | 0.24379 (16) | 0.49243 (8) | −0.11360 (14) | 0.0452 (3) | |
| O5 | 0.98177 (14) | 0.19620 (8) | 0.54419 (13) | 0.0407 (3) | |
| H04 | 1.205 (3) | 0.2741 (15) | 0.711 (3) | 0.057 (6)* | |
| H06 | 1.114 (3) | 0.2797 (14) | 0.857 (3) | 0.054 (6)* | |
| H08 | 0.853 (3) | 0.2351 (14) | 0.857 (3) | 0.053 (6)* | |
| H09 | 0.429 (3) | 0.3798 (15) | −0.137 (3) | 0.057 (6)* |
| C1 | 0.0362 (8) | 0.0364 (8) | 0.0250 (7) | −0.0052 (6) | 0.0080 (6) | −0.0025 (6) |
| C2 | 0.0300 (7) | 0.0367 (8) | 0.0280 (7) | −0.0046 (6) | 0.0081 (6) | −0.0038 (6) |
| C3 | 0.0362 (8) | 0.0488 (9) | 0.0319 (8) | 0.0001 (7) | 0.0116 (6) | −0.0065 (7) |
| C4 | 0.0383 (9) | 0.0506 (10) | 0.0463 (10) | 0.0095 (7) | 0.0132 (7) | −0.0057 (8) |
| C5 | 0.0342 (8) | 0.0458 (9) | 0.0399 (9) | 0.0051 (7) | 0.0040 (7) | 0.0013 (7) |
| C6 | 0.0292 (7) | 0.0353 (8) | 0.0306 (8) | −0.0035 (6) | 0.0046 (6) | −0.0012 (6) |
| C7 | 0.0308 (7) | 0.0361 (8) | 0.0299 (8) | −0.0055 (6) | 0.0016 (6) | 0.0002 (6) |
| C8 | 0.0336 (8) | 0.0387 (8) | 0.0277 (7) | 0.0037 (6) | 0.0078 (6) | 0.0043 (6) |
| N1 | 0.0303 (6) | 0.0354 (7) | 0.0256 (6) | −0.0017 (5) | 0.0065 (5) | −0.0016 (5) |
| N2 | 0.0306 (7) | 0.0398 (7) | 0.0314 (7) | −0.0036 (5) | 0.0087 (5) | 0.0008 (5) |
| N3 | 0.0344 (7) | 0.0675 (10) | 0.0273 (7) | −0.0105 (7) | 0.0095 (5) | −0.0106 (7) |
| N4 | 0.0356 (8) | 0.0707 (11) | 0.0383 (8) | −0.0115 (7) | 0.0125 (6) | −0.0101 (7) |
| O1 | 0.0437 (7) | 0.0467 (7) | 0.0301 (6) | 0.0099 (5) | 0.0128 (5) | 0.0059 (5) |
| O2 | 0.0561 (8) | 0.0610 (8) | 0.0245 (6) | 0.0025 (6) | 0.0153 (5) | 0.0014 (5) |
| O3 | 0.0514 (7) | 0.0597 (8) | 0.0233 (6) | 0.0161 (6) | 0.0053 (5) | −0.0021 (5) |
| O4 | 0.0549 (7) | 0.0471 (7) | 0.0323 (6) | 0.0058 (6) | 0.0009 (5) | 0.0057 (5) |
| O5 | 0.0393 (6) | 0.0584 (7) | 0.0262 (6) | −0.0001 (5) | 0.0107 (4) | −0.0009 (5) |
| C1—O2 | 1.2499 (18) | C7—O4 | 1.2107 (19) |
| C1—O1 | 1.2507 (19) | C7—O3 | 1.311 (2) |
| C1—C2 | 1.516 (2) | C8—O5 | 1.2338 (19) |
| C2—N1 | 1.3358 (19) | C8—N4 | 1.326 (2) |
| C2—C3 | 1.391 (2) | C8—N3 | 1.364 (2) |
| C3—C4 | 1.379 (2) | N2—N3 | 1.4090 (19) |
| C3—H3 | 0.9300 | N2—H01A | 0.8900 |
| C4—C5 | 1.381 (2) | N2—H01B | 0.8900 |
| C4—H4 | 0.9300 | N2—H01C | 0.8900 |
| C5—C6 | 1.387 (2) | N3—H08 | 0.88 (2) |
| C5—H5 | 0.9300 | N4—H04 | 0.83 (2) |
| C6—N1 | 1.336 (2) | N4—H06 | 0.88 (2) |
| C6—C7 | 1.504 (2) | O3—H09 | 0.84 (2) |
| O2—C1—O1 | 124.90 (15) | O4—C7—C6 | 122.35 (15) |
| O2—C1—C2 | 117.83 (14) | O3—C7—C6 | 114.02 (13) |
| O1—C1—C2 | 117.25 (13) | O5—C8—N4 | 125.06 (15) |
| N1—C2—C3 | 122.73 (15) | O5—C8—N3 | 120.18 (15) |
| N1—C2—C1 | 116.04 (13) | N4—C8—N3 | 114.74 (14) |
| C3—C2—C1 | 121.22 (13) | C2—N1—C6 | 117.78 (13) |
| C4—C3—C2 | 118.65 (15) | N3—N2—H01A | 109.5 |
| C4—C3—H3 | 120.7 | N3—N2—H01B | 109.5 |
| C2—C3—H3 | 120.7 | H01A—N2—H01B | 109.5 |
| C3—C4—C5 | 119.29 (15) | N3—N2—H01C | 109.5 |
| C3—C4—H4 | 120.4 | H01A—N2—H01C | 109.5 |
| C5—C4—H4 | 120.4 | H01B—N2—H01C | 109.5 |
| C4—C5—C6 | 118.16 (15) | C8—N3—N2 | 116.86 (13) |
| C4—C5—H5 | 120.9 | C8—N3—H08 | 121.6 (14) |
| C6—C5—H5 | 120.9 | N2—N3—H08 | 116.0 (14) |
| N1—C6—C5 | 123.36 (14) | C8—N4—H04 | 117.1 (16) |
| N1—C6—C7 | 117.54 (13) | C8—N4—H06 | 116.7 (14) |
| C5—C6—C7 | 119.09 (14) | H04—N4—H06 | 126 (2) |
| O4—C7—O3 | 123.62 (15) | C7—O3—H09 | 108.9 (15) |
| O2—C1—C2—N1 | −167.83 (14) | N1—C6—C7—O4 | −176.25 (14) |
| O1—C1—C2—N1 | 10.7 (2) | C5—C6—C7—O4 | 4.7 (2) |
| O2—C1—C2—C3 | 11.3 (2) | N1—C6—C7—O3 | 4.6 (2) |
| O1—C1—C2—C3 | −170.13 (15) | C5—C6—C7—O3 | −174.44 (14) |
| N1—C2—C3—C4 | −0.3 (2) | C3—C2—N1—C6 | −1.2 (2) |
| C1—C2—C3—C4 | −179.36 (15) | C1—C2—N1—C6 | 177.91 (13) |
| C2—C3—C4—C5 | 1.4 (3) | C5—C6—N1—C2 | 1.6 (2) |
| C3—C4—C5—C6 | −1.1 (3) | C7—C6—N1—C2 | −177.39 (13) |
| C4—C5—C6—N1 | −0.5 (2) | O5—C8—N3—N2 | −13.1 (2) |
| C4—C5—C6—C7 | 178.52 (15) | N4—C8—N3—N2 | 168.50 (15) |
| H··· | ||||
| N2—H01A···O1i | 0.89 | 2.00 | 2.7551 (17) | 141 |
| N2—H01A···N1i | 0.89 | 2.21 | 2.9361 (17) | 139 |
| N2—H01B···O4ii | 0.89 | 2.04 | 2.8781 (19) | 156 |
| N2—H01C···O1 | 0.89 | 1.84 | 2.7258 (18) | 176 |
| N4—H04···O2iii | 0.83 (2) | 2.22 (2) | 2.993 (2) | 155 (2) |
| N3—H08···O5i | 0.88 (2) | 2.06 (2) | 2.8362 (19) | 146.2 (19) |
| N3—H08···O1i | 0.88 (2) | 2.49 (2) | 2.9319 (18) | 112.0 (16) |
| O3—H09···O2iv | 0.84 (2) | 1.79 (2) | 2.6109 (16) | 165 (2) |
| N4—H06···O5i | 0.88 (2) | 2.05 (2) | 2.869 (2) | 153.5 (19) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H01 | 0.89 | 2.00 | 2.7551 (17) | 141 |
| N2—H01 | 0.89 | 2.21 | 2.9361 (17) | 139 |
| N2—H01 | 0.89 | 2.04 | 2.8781 (19) | 156 |
| N2—H01 | 0.89 | 1.84 | 2.7258 (18) | 176 |
| N4—H04⋯O2iii | 0.83 (2) | 2.22 (2) | 2.993 (2) | 155 (2) |
| N3—H08⋯O5i | 0.88 (2) | 2.06 (2) | 2.8362 (19) | 146.2 (19) |
| N3—H08⋯O1i | 0.88 (2) | 2.49 (2) | 2.9319 (18) | 112.0 (16) |
| O3—H09⋯O2iv | 0.84 (2) | 1.79 (2) | 2.6109 (16) | 165 (2) |
| N4—H06⋯O5i | 0.88 (2) | 2.05 (2) | 2.869 (2) | 153.5 (19) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .