Literature DB >> 21523049

Disordered structure of propane-1,2-diaminium dichloride.

Izabela Pospieszna-Markiewicz1, Ewa Zielaskiewicz, Wanda Radecka-Paryzek, Maciej Kubicki.   

Abstract

In the title compound, C(3)H(12)N(2) (2+)·2Cl(-), the cations are disordered over two well resolved positions in a 0.525 (13):0.475 (13) ratio. The disorder involves two C atoms which assume positions that make an almost mirror-sym-metrical system. Similar disorder is observed both at room temperature and at 120 (1) K. The conformation of the NCCN chain in both components is close to trans (the torsion angles ca ±170°), while that of CCCN chain is close to gauche (±50°). In the crystal, a network of relatively strong N-H⋯Cl hydrogen bonds connects the cations and anions into one-cation-deep layers parallel to (001); there are R(2) (4)(8) and R(2) (4)(11) ring motifs within the plane. The planes are only loosely connected by van der Waals contacts and electrostatic inter-actions between cations and anions.

Entities:  

Year:  2011        PMID: 21523049      PMCID: PMC3051629          DOI: 10.1107/S1600536811001036

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general literature on polyamines, see, for example: Hosseinkhani et al. (2004 ▶); Pospieszna-Markiewicz et al. (2006 ▶, 2007 ▶); Ziebarth & Wang (2009 ▶); Itaka et al. (2010 ▶). For the crystal structures of simple salts of propane-1,2-diaminium, see: Aghabozorg et al. (2008 ▶); Gerrard & Weller (2002 ▶); Lee & Harrison (2003 ▶); Todd & Harrison (2005 ▶).

Experimental

Crystal data

C3H12N2 2+·2Cl− M = 147.05 Orthorhombic, a = 10.985 (3) Å b = 7.079 (2) Å c = 9.698 (2) Å V = 754.1 (3) Å3 Z = 4 Cu Kα radiation μ = 6.95 mm−1 T = 120 K 0.25 × 0.1 × 0.05 mm

Data collection

Oxford Diffraction Xcalibur Eos diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.640, T max = 1.000 2817 measured reflections 1306 independent reflections 1265 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.098 S = 1.13 1306 reflections 86 parameters 1 restraint H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.34 e Å−3 Absolute structure: Flack (1983 ▶), 473 Friedel pairs Flack parameter: 0.09 (3) Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811001036/cv5036sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811001036/cv5036Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C3H12N22+·2ClF(000) = 312
Mr = 147.05Dx = 1.295 Mg m3
Orthorhombic, Pna21Cu Kα radiation, λ = 1.54178 Å
Hall symbol: P 2c -2nCell parameters from 2191 reflections
a = 10.985 (3) Åθ = 4.0–75.5°
b = 7.079 (2) ŵ = 6.95 mm1
c = 9.698 (2) ÅT = 120 K
V = 754.1 (3) Å3Block, colourless
Z = 40.25 × 0.1 × 0.05 mm
Oxford Diffraction Xcalibur Eos diffractometer1306 independent reflections
Radiation source: Enhance (Mo) X-ray Source1265 reflections with I > 2σ(I)
graphiteRint = 0.032
Detector resolution: 16.1544 pixels mm-1θmax = 75.7°, θmin = 7.4°
ω scansh = −12→13
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −8→8
Tmin = 0.640, Tmax = 1.000l = −11→12
2817 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.034H-atom parameters constrained
wR(F2) = 0.098w = 1/[σ2(Fo2) + (0.0669P)2 + 0.1755P] where P = (Fo2 + 2Fc2)/3
S = 1.13(Δ/σ)max = 0.001
1306 reflectionsΔρmax = 0.33 e Å3
86 parametersΔρmin = −0.34 e Å3
1 restraintAbsolute structure: Flack (1983), 473 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.09 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
N10.2839 (2)0.7068 (3)0.5952 (3)0.0290 (5)
H1A0.24620.79530.54220.043*0.525 (13)
H1B0.22690.63480.63860.043*0.525 (13)
H1C0.33130.76530.65920.043*0.525 (13)
H1D0.25470.80300.54240.043*0.475 (13)
H1E0.22520.66850.65520.043*0.475 (13)
H1F0.35010.74740.64320.043*0.475 (13)
C20.3589 (9)0.5771 (12)0.5034 (11)0.027 (2)0.525 (13)
H20.43900.63960.48580.032*0.525 (13)
C210.2954 (9)0.5541 (8)0.3682 (7)0.034 (2)0.525 (13)
H21A0.21330.50430.38380.051*0.525 (13)
H21B0.34120.46600.31010.051*0.525 (13)
H21C0.28990.67690.32190.051*0.525 (13)
C2A0.3142 (10)0.5396 (15)0.5026 (12)0.027 (2)0.475 (13)
H2A0.23580.47950.47370.032*0.475 (13)
C21A0.3753 (8)0.6147 (11)0.3760 (8)0.035 (2)0.475 (13)
H21D0.40240.50910.31840.052*0.475 (13)
H21E0.44580.69130.40280.052*0.475 (13)
H21F0.31780.69290.32410.052*0.475 (13)
C30.3821 (3)0.4007 (4)0.5893 (4)0.0328 (7)
H3A0.30240.35660.62460.039*0.525 (13)
H3B0.43410.43080.66970.039*0.525 (13)
H3C0.44540.46490.64480.039*0.475 (13)
H3D0.32220.34520.65400.039*0.475 (13)
N40.4396 (2)0.2468 (3)0.5090 (3)0.0253 (5)
H4A0.50610.29250.46400.038*
H4B0.38540.20070.44660.038*
H4C0.46290.15260.56720.038*
Cl10.18604 (6)0.05885 (8)0.42805 (6)0.0279 (2)
Cl20.52155 (6)0.91848 (8)0.70308 (9)0.0328 (2)
U11U22U33U12U13U23
N10.0357 (13)0.0183 (12)0.0329 (12)0.0056 (9)0.0017 (10)−0.0040 (9)
C20.036 (5)0.009 (4)0.035 (4)0.005 (3)−0.003 (4)0.000 (3)
C210.053 (5)0.015 (3)0.034 (4)0.007 (3)−0.014 (3)0.002 (2)
C2A0.033 (5)0.014 (5)0.033 (4)0.004 (4)0.009 (4)−0.002 (3)
C21A0.049 (5)0.022 (3)0.033 (3)0.015 (3)0.008 (3)0.011 (3)
C30.0530 (18)0.0185 (13)0.0269 (14)0.0108 (12)0.0001 (13)0.0005 (10)
N40.0319 (12)0.0141 (11)0.0298 (12)0.0028 (9)−0.0006 (9)−0.0012 (8)
Cl10.0323 (3)0.0199 (3)0.0314 (3)0.0026 (2)−0.0011 (3)−0.0003 (2)
Cl20.0350 (4)0.0252 (3)0.0383 (4)−0.0001 (2)−0.0050 (3)0.0103 (3)
N1—C21.522 (10)C2A—C31.493 (12)
N1—C2A1.523 (10)C2A—C21A1.496 (14)
N1—H1A0.9100C2A—H2A1.0000
N1—H1B0.9100C21A—H21D0.9800
N1—H1C0.9101C21A—H21E0.9800
N1—H1D0.9101C21A—H21F0.9800
N1—H1E0.9100C3—N41.481 (4)
N1—H1F0.9100C3—H3A0.9900
C2—C211.495 (13)C3—H3B0.9900
C2—C31.523 (10)C3—H3C0.9900
C2—H21.0000C3—H3D0.9899
C21—H21A0.9800N4—H4A0.9100
C21—H21B0.9800N4—H4B0.9100
C21—H21C0.9800N4—H4C0.9100
C2—N1—H1A109.3C2A—C21A—H21D109.5
C2A—N1—H1A107.5C2A—C21A—H21E109.5
C2—N1—H1B107.7H21D—C21A—H21E109.5
C2A—N1—H1B89.3C2A—C21A—H21F109.5
H1A—N1—H1B109.5H21D—C21A—H21F109.5
C2—N1—H1C111.3H21E—C21A—H21F109.5
C2A—N1—H1C129.1N4—C3—C2A113.7 (5)
H1A—N1—H1C109.5N4—C3—C2112.8 (4)
H1B—N1—H1C109.5N4—C3—H3A109.1
C2A—N1—H1D109.0C2A—C3—H3A87.7
C2A—N1—H1E107.5C2—C3—H3A107.4
H1D—N1—H1E109.5N4—C3—H3B109.0
C2A—N1—H1F111.9C2A—C3—H3B126.1
H1D—N1—H1F109.5C2—C3—H3B110.5
H1E—N1—H1F109.5H3A—C3—H3B107.8
C21—C2—N1109.0 (7)N4—C3—H3C108.8
C21—C2—C3118.0 (7)C2A—C3—H3C110.7
N1—C2—C3105.4 (7)N4—C3—H3D109.0
C21—C2—H2108.0C2A—C3—H3D106.6
N1—C2—H2108.0H3C—C3—H3D107.7
C3—C2—H2108.0C3—N4—H4A109.5
C3—C2A—C21A118.2 (8)C3—N4—H4B109.5
C3—C2A—N1106.8 (7)H4A—N4—H4B109.5
C21A—C2A—N1107.8 (8)C3—N4—H4C109.5
C3—C2A—H2A107.9H4A—N4—H4C109.5
C21A—C2A—H2A107.9H4B—N4—H4C109.5
N1—C2A—H2A107.9
C2A—N1—C2—C2154.9 (18)C21A—C2A—C3—C245.2 (16)
C2A—N1—C2—C3−72.6 (19)N1—C2A—C3—C2−76.3 (19)
C2—N1—C2A—C378.5 (19)C21—C2—C3—N450.0 (10)
C2—N1—C2A—C21A−49.4 (17)N1—C2—C3—N4172.0 (4)
C21A—C2A—C3—N4−47.0 (11)C21—C2—C3—C2A−47.0 (17)
N1—C2A—C3—N4−168.5 (4)N1—C2—C3—C2A74.9 (18)
D—H···AD—HH···AD···AD—H···A
N1—H1D···Cl1i0.912.253.161 (3)175
N1—H1E···Cl2ii0.912.373.192 (3)151
N1—H1F···Cl20.912.313.187 (3)161
N4—H4B···Cl10.912.423.186 (3)142
N4—H4A···Cl1iii0.912.273.136 (3)160
N4—H4C···Cl2iv0.912.213.123 (2)178
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1D⋯Cl1i0.912.253.161 (3)175
N1—H1E⋯Cl2ii0.912.373.192 (3)151
N1—H1F⋯Cl20.912.313.187 (3)161
N4—H4B⋯Cl10.912.423.186 (3)142
N4—H4A⋯Cl1iii0.912.273.136 (3)160
N4—H4C⋯Cl2iv0.912.213.123 (2)178

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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