| Literature DB >> 21582193 |
Janet Soleimannejad, Hossein Aghabozorg, Shokoh Najafi, Mina Nasibipour, Jafar Attar Gharamaleki.
Abstract
The combination of 2-hydroxy-propane-1,2,3-tricarboxylic acid (H(3)hypta, also called citric acid) and 4,4'-bipyridine (4,4'-bipy) in a 1:1.5 molar ratio leads to the formation of the title mol-ecular cocrystal, 1.5C(10)H(8)N(2)·C(6)H(8)O(7). The asymmetric unit contains one and a half 4,4'-bipy units, with one lying across a centre of inversion, and one H(3)hypta mol-ecule. The significant differences in the C-O bond distances support the existence of the un-ionized acid mol-ecule and confirm the formation of a cocrystal. There are π-π and C-H⋯π stacking inter-actions between the aromatic rings of 4,4'-bipy [with inter-planar distances of 3.7739 (8) and 3.7970 (8) Å] and between CH groups of H(3)hypta [with an H⋯π distance of 2.63 Å]. In the crystal structure, intermolecular O-H⋯N hydrogen bonds occur and an O-H⋯O hydrogen bond occurs within the citric acid moiety.Entities:
Year: 2009 PMID: 21582193 PMCID: PMC2968425 DOI: 10.1107/S1600536809004607
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| 1.5C10H8N2·C6H8O7 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 20381 reflections |
| θ = 2.7–29.6° | |
| µ = 0.11 mm−1 | |
| β = 90.302 (2)° | Block, yellow |
| 0.31 × 0.26 × 0.22 mm | |
| Bruker SMART CCD area-detector diffractometer | 6045 independent reflections |
| Radiation source: fine-focus sealed tube | 4986 reflections with |
| graphite | |
| φ and ω scans | θmax = 30.5°, θmin = 1.2° |
| Absorption correction: multi-scan ( | |
| 63749 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 6045 reflections | (Δ/σ)max < 0.001 |
| 284 parameters | Δρmax = 0.40 e Å−3 |
| 0 restraints | Δρmin = −0.24 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 1.22826 (14) | 0.02331 (3) | 0.66535 (13) | 0.0327 (2) | |
| H1A | 1.3359 | 0.0254 | 0.7078 | 0.049* | |
| O2 | 1.27436 (15) | 0.08764 (3) | 0.60893 (15) | 0.0360 (3) | |
| O3 | 0.85874 (15) | 0.12663 (3) | 0.72640 (11) | 0.0274 (2) | |
| H3A | 0.8845 | 0.1464 | 0.7838 | 0.041* | |
| O4 | 1.00936 (14) | 0.16212 (3) | 0.54053 (11) | 0.0258 (2) | |
| O5 | 0.59732 (15) | 0.15627 (3) | 0.37884 (11) | 0.0274 (2) | |
| O6 | 0.52218 (17) | 0.10777 (3) | 0.20888 (12) | 0.0339 (3) | |
| H6A | 0.4824 | 0.1270 | 0.1541 | 0.051* | |
| O7 | 0.99435 (14) | 0.10297 (3) | 0.33252 (10) | 0.02327 (19) | |
| H7A | 1.0802 | 0.1200 | 0.3467 | 0.035* | |
| C1 | 1.17363 (18) | 0.05848 (4) | 0.61136 (14) | 0.0207 (2) | |
| C2 | 0.97059 (17) | 0.05761 (3) | 0.55534 (15) | 0.0195 (2) | |
| H2A | 0.8884 | 0.0516 | 0.6468 | 0.023* | |
| H2B | 0.9561 | 0.0354 | 0.4789 | 0.023* | |
| C3 | 0.89834 (17) | 0.09596 (3) | 0.47738 (13) | 0.0173 (2) | |
| C4 | 0.68742 (18) | 0.08896 (4) | 0.43974 (15) | 0.0208 (2) | |
| H4A | 0.6741 | 0.0632 | 0.3832 | 0.025* | |
| H4B | 0.6168 | 0.0867 | 0.5401 | 0.025* | |
| C5 | 0.59840 (18) | 0.12151 (4) | 0.34080 (14) | 0.0206 (2) | |
| C6 | 0.92786 (18) | 0.13235 (3) | 0.58559 (14) | 0.0194 (2) | |
| N1 | 0.42826 (18) | 0.31593 (3) | 0.42264 (13) | 0.0263 (2) | |
| N2 | 0.42914 (18) | 0.16451 (3) | 1.00572 (14) | 0.0278 (2) | |
| C7 | 0.4111 (2) | 0.32444 (4) | 0.57535 (16) | 0.0285 (3) | |
| H7 | 0.3926 | 0.3515 | 0.6050 | 0.034* | |
| C8 | 0.4188 (2) | 0.29590 (4) | 0.69282 (15) | 0.0262 (3) | |
| H8 | 0.4064 | 0.3034 | 0.8004 | 0.031* | |
| C9 | 0.44484 (18) | 0.25603 (4) | 0.65244 (14) | 0.0206 (2) | |
| C10 | 0.44274 (18) | 0.22416 (4) | 0.77407 (14) | 0.0203 (2) | |
| C11 | 0.4672 (2) | 0.23319 (4) | 0.93413 (15) | 0.0262 (3) | |
| H11 | 0.4887 | 0.2599 | 0.9670 | 0.031* | |
| C12 | 0.4597 (2) | 0.20272 (4) | 1.04392 (16) | 0.0291 (3) | |
| H12 | 0.4772 | 0.2093 | 1.1521 | 0.035* | |
| C13 | 0.4046 (2) | 0.15593 (4) | 0.85302 (16) | 0.0275 (3) | |
| H13 | 0.3824 | 0.1289 | 0.8240 | 0.033* | |
| C14 | 0.4101 (2) | 0.18445 (4) | 0.73488 (15) | 0.0243 (3) | |
| H14 | 0.3917 | 0.1769 | 0.6278 | 0.029* | |
| C15 | 0.4680 (2) | 0.24726 (4) | 0.49209 (15) | 0.0262 (3) | |
| H15 | 0.4899 | 0.2206 | 0.4587 | 0.031* | |
| C16 | 0.4587 (2) | 0.27789 (4) | 0.38298 (15) | 0.0282 (3) | |
| H16 | 0.4747 | 0.2716 | 0.2745 | 0.034* | |
| N3 | 0.56382 (16) | 0.01882 (4) | 0.80165 (13) | 0.0261 (2) | |
| C17 | 0.6626 (2) | −0.01444 (4) | 0.77585 (17) | 0.0292 (3) | |
| H17 | 0.6137 | −0.0332 | 0.7021 | 0.035* | |
| C18 | 0.83276 (19) | −0.02304 (4) | 0.85097 (16) | 0.0257 (3) | |
| H18 | 0.8979 | −0.0472 | 0.8286 | 0.031* | |
| C19 | 0.90778 (16) | 0.00392 (4) | 0.95940 (13) | 0.0183 (2) | |
| C20 | 0.8034 (2) | 0.03831 (4) | 0.98728 (16) | 0.0274 (3) | |
| H20 | 0.8478 | 0.0575 | 1.0613 | 0.033* | |
| C21 | 0.6342 (2) | 0.04450 (4) | 0.90668 (17) | 0.0295 (3) | |
| H21 | 0.5649 | 0.0682 | 0.9274 | 0.035* |
| O1 | 0.0243 (5) | 0.0270 (5) | 0.0467 (6) | 0.0001 (4) | −0.0148 (4) | 0.0088 (4) |
| O2 | 0.0232 (5) | 0.0249 (5) | 0.0597 (7) | −0.0039 (4) | −0.0068 (5) | 0.0009 (5) |
| O3 | 0.0403 (6) | 0.0231 (5) | 0.0190 (4) | −0.0043 (4) | 0.0041 (4) | −0.0039 (3) |
| O4 | 0.0326 (5) | 0.0186 (4) | 0.0262 (5) | −0.0057 (4) | −0.0031 (4) | 0.0012 (3) |
| O5 | 0.0372 (6) | 0.0198 (4) | 0.0250 (5) | 0.0051 (4) | −0.0040 (4) | −0.0013 (3) |
| O6 | 0.0534 (7) | 0.0212 (5) | 0.0269 (5) | 0.0017 (4) | −0.0190 (5) | 0.0016 (4) |
| O7 | 0.0287 (5) | 0.0223 (4) | 0.0189 (4) | −0.0030 (3) | 0.0044 (3) | −0.0009 (3) |
| C1 | 0.0199 (6) | 0.0214 (6) | 0.0207 (6) | 0.0014 (4) | −0.0018 (4) | −0.0021 (4) |
| C2 | 0.0196 (6) | 0.0158 (5) | 0.0231 (6) | 0.0000 (4) | −0.0042 (4) | 0.0014 (4) |
| C3 | 0.0200 (6) | 0.0153 (5) | 0.0165 (5) | −0.0001 (4) | −0.0003 (4) | 0.0000 (4) |
| C4 | 0.0208 (6) | 0.0177 (5) | 0.0238 (6) | −0.0007 (4) | −0.0053 (4) | 0.0034 (4) |
| C5 | 0.0218 (6) | 0.0200 (5) | 0.0200 (6) | 0.0016 (4) | −0.0011 (4) | 0.0022 (4) |
| C6 | 0.0221 (6) | 0.0172 (5) | 0.0190 (5) | 0.0012 (4) | −0.0030 (4) | −0.0008 (4) |
| N1 | 0.0366 (6) | 0.0232 (5) | 0.0193 (5) | 0.0002 (4) | 0.0017 (4) | 0.0028 (4) |
| N2 | 0.0362 (6) | 0.0247 (5) | 0.0225 (5) | 0.0027 (5) | −0.0070 (5) | 0.0041 (4) |
| C7 | 0.0443 (8) | 0.0197 (6) | 0.0214 (6) | 0.0031 (5) | 0.0013 (5) | 0.0003 (5) |
| C8 | 0.0405 (8) | 0.0215 (6) | 0.0164 (6) | 0.0039 (5) | 0.0013 (5) | −0.0005 (4) |
| C9 | 0.0239 (6) | 0.0205 (5) | 0.0175 (5) | 0.0026 (4) | −0.0006 (4) | 0.0008 (4) |
| C10 | 0.0216 (6) | 0.0214 (6) | 0.0178 (5) | 0.0036 (4) | −0.0013 (4) | 0.0010 (4) |
| C11 | 0.0379 (7) | 0.0211 (6) | 0.0196 (6) | 0.0038 (5) | −0.0045 (5) | −0.0003 (4) |
| C12 | 0.0430 (8) | 0.0255 (6) | 0.0188 (6) | 0.0047 (6) | −0.0061 (5) | 0.0011 (5) |
| C13 | 0.0348 (7) | 0.0216 (6) | 0.0259 (6) | 0.0005 (5) | −0.0072 (5) | 0.0013 (5) |
| C14 | 0.0296 (7) | 0.0234 (6) | 0.0198 (6) | 0.0014 (5) | −0.0037 (5) | −0.0009 (4) |
| C15 | 0.0389 (8) | 0.0200 (6) | 0.0198 (6) | 0.0041 (5) | 0.0028 (5) | −0.0019 (4) |
| C16 | 0.0419 (8) | 0.0258 (6) | 0.0168 (6) | 0.0025 (5) | 0.0037 (5) | −0.0005 (5) |
| N3 | 0.0197 (5) | 0.0314 (6) | 0.0272 (6) | 0.0009 (4) | −0.0037 (4) | 0.0068 (4) |
| C17 | 0.0244 (7) | 0.0292 (7) | 0.0338 (7) | −0.0025 (5) | −0.0087 (5) | −0.0018 (5) |
| C18 | 0.0229 (6) | 0.0208 (6) | 0.0333 (7) | 0.0032 (5) | −0.0062 (5) | −0.0041 (5) |
| C19 | 0.0176 (5) | 0.0203 (5) | 0.0169 (5) | 0.0015 (4) | −0.0009 (4) | 0.0017 (4) |
| C20 | 0.0278 (7) | 0.0268 (6) | 0.0274 (6) | 0.0086 (5) | −0.0065 (5) | −0.0057 (5) |
| C21 | 0.0277 (7) | 0.0300 (7) | 0.0306 (7) | 0.0114 (5) | −0.0046 (5) | −0.0002 (5) |
| O1—C1 | 1.3205 (15) | C8—C9 | 1.3915 (17) |
| O1—H1A | 0.8400 | C8—H8 | 0.9500 |
| O2—C1 | 1.2073 (16) | C9—C15 | 1.4002 (17) |
| O3—C6 | 1.3048 (15) | C9—C10 | 1.4838 (17) |
| O3—H3A | 0.8400 | C10—C14 | 1.3902 (17) |
| O4—C6 | 1.2131 (15) | C10—C11 | 1.3990 (17) |
| O5—C5 | 1.2084 (15) | C11—C12 | 1.3820 (18) |
| O6—C5 | 1.3200 (15) | C11—H11 | 0.9500 |
| O6—H6A | 0.8400 | C12—H12 | 0.9500 |
| O7—C3 | 1.4235 (14) | C13—C14 | 1.3844 (18) |
| O7—H7A | 0.8400 | C13—H13 | 0.9500 |
| C1—C2 | 1.5035 (17) | C14—H14 | 0.9500 |
| C2—C3 | 1.5306 (16) | C15—C16 | 1.3825 (18) |
| C2—H2A | 0.9900 | C15—H15 | 0.9500 |
| C2—H2B | 0.9900 | C16—H16 | 0.9500 |
| C3—C4 | 1.5345 (17) | N3—C21 | 1.3313 (18) |
| C3—C6 | 1.5389 (16) | N3—C17 | 1.3323 (18) |
| C4—C5 | 1.5096 (16) | C17—C18 | 1.3832 (18) |
| C4—H4A | 0.9900 | C17—H17 | 0.9500 |
| C4—H4B | 0.9900 | C18—C19 | 1.3906 (17) |
| N1—C7 | 1.3309 (17) | C18—H18 | 0.9500 |
| N1—C16 | 1.3357 (17) | C19—C20 | 1.3875 (17) |
| N2—C13 | 1.3355 (17) | C19—C19i | 1.489 (2) |
| N2—C12 | 1.3379 (18) | C20—C21 | 1.3851 (18) |
| C7—C8 | 1.3810 (18) | C20—H20 | 0.9500 |
| C7—H7 | 0.9500 | C21—H21 | 0.9500 |
| C1—O1—H1A | 109.5 | C8—C9—C10 | 121.22 (11) |
| C6—O3—H3A | 109.5 | C15—C9—C10 | 121.63 (11) |
| C5—O6—H6A | 109.5 | C14—C10—C11 | 117.23 (11) |
| C3—O7—H7A | 109.5 | C14—C10—C9 | 121.67 (11) |
| O2—C1—O1 | 123.93 (12) | C11—C10—C9 | 121.06 (11) |
| O2—C1—C2 | 124.57 (11) | C12—C11—C10 | 119.19 (12) |
| O1—C1—C2 | 111.49 (10) | C12—C11—H11 | 120.4 |
| C1—C2—C3 | 115.65 (10) | C10—C11—H11 | 120.4 |
| C1—C2—H2A | 108.4 | N2—C12—C11 | 123.41 (12) |
| C3—C2—H2A | 108.4 | N2—C12—H12 | 118.3 |
| C1—C2—H2B | 108.4 | C11—C12—H12 | 118.3 |
| C3—C2—H2B | 108.4 | N2—C13—C14 | 123.22 (12) |
| H2A—C2—H2B | 107.4 | N2—C13—H13 | 118.4 |
| O7—C3—C2 | 110.63 (10) | C14—C13—H13 | 118.4 |
| O7—C3—C4 | 108.00 (9) | C13—C14—C10 | 119.55 (12) |
| C2—C3—C4 | 106.27 (9) | C13—C14—H14 | 120.2 |
| O7—C3—C6 | 108.65 (9) | C10—C14—H14 | 120.2 |
| C2—C3—C6 | 111.39 (9) | C16—C15—C9 | 119.18 (12) |
| C4—C3—C6 | 111.86 (10) | C16—C15—H15 | 120.4 |
| C5—C4—C3 | 113.77 (10) | C9—C15—H15 | 120.4 |
| C5—C4—H4A | 108.8 | N1—C16—C15 | 123.18 (12) |
| C3—C4—H4A | 108.8 | N1—C16—H16 | 118.4 |
| C5—C4—H4B | 108.8 | C15—C16—H16 | 118.4 |
| C3—C4—H4B | 108.8 | C21—N3—C17 | 117.24 (11) |
| H4A—C4—H4B | 107.7 | N3—C17—C18 | 123.37 (13) |
| O5—C5—O6 | 123.98 (11) | N3—C17—H17 | 118.3 |
| O5—C5—C4 | 123.46 (11) | C18—C17—H17 | 118.3 |
| O6—C5—C4 | 112.56 (10) | C17—C18—C19 | 119.56 (12) |
| O4—C6—O3 | 125.98 (11) | C17—C18—H18 | 120.2 |
| O4—C6—C3 | 121.77 (11) | C19—C18—H18 | 120.2 |
| O3—C6—C3 | 112.24 (10) | C20—C19—C18 | 116.91 (11) |
| C7—N1—C16 | 117.68 (11) | C20—C19—C19i | 121.93 (14) |
| C13—N2—C12 | 117.39 (12) | C18—C19—C19i | 121.17 (13) |
| N1—C7—C8 | 123.27 (12) | C21—C20—C19 | 119.66 (12) |
| N1—C7—H7 | 118.4 | C21—C20—H20 | 120.2 |
| C8—C7—H7 | 118.4 | C19—C20—H20 | 120.2 |
| C7—C8—C9 | 119.50 (12) | N3—C21—C20 | 123.26 (13) |
| C7—C8—H8 | 120.2 | N3—C21—H21 | 118.4 |
| C9—C8—H8 | 120.2 | C20—C21—H21 | 118.4 |
| C8—C9—C15 | 117.13 (11) | ||
| O2—C1—C2—C3 | 5.62 (19) | C8—C9—C10—C11 | −17.8 (2) |
| O1—C1—C2—C3 | −174.98 (11) | C15—C9—C10—C11 | 163.88 (13) |
| C1—C2—C3—O7 | 66.37 (13) | C14—C10—C11—C12 | 0.6 (2) |
| C1—C2—C3—C4 | −176.64 (10) | C9—C10—C11—C12 | 178.46 (13) |
| C1—C2—C3—C6 | −54.58 (14) | C13—N2—C12—C11 | −0.1 (2) |
| O7—C3—C4—C5 | −52.92 (13) | C10—C11—C12—N2 | −0.3 (2) |
| C2—C3—C4—C5 | −171.64 (10) | C12—N2—C13—C14 | 0.2 (2) |
| C6—C3—C4—C5 | 66.59 (13) | N2—C13—C14—C10 | 0.1 (2) |
| C3—C4—C5—O5 | −56.85 (17) | C11—C10—C14—C13 | −0.5 (2) |
| C3—C4—C5—O6 | 123.21 (12) | C9—C10—C14—C13 | −178.34 (13) |
| O7—C3—C6—O4 | 4.99 (16) | C8—C9—C15—C16 | −1.8 (2) |
| C2—C3—C6—O4 | 127.10 (12) | C10—C9—C15—C16 | 176.56 (13) |
| C4—C3—C6—O4 | −114.14 (13) | C7—N1—C16—C15 | 1.7 (2) |
| O7—C3—C6—O3 | −174.06 (10) | C9—C15—C16—N1 | 0.0 (2) |
| C2—C3—C6—O3 | −51.95 (14) | C21—N3—C17—C18 | −0.6 (2) |
| C4—C3—C6—O3 | 66.82 (13) | N3—C17—C18—C19 | −0.1 (2) |
| C16—N1—C7—C8 | −1.6 (2) | C17—C18—C19—C20 | 0.8 (2) |
| N1—C7—C8—C9 | −0.3 (2) | C17—C18—C19—C19i | −178.91 (15) |
| C7—C8—C9—C15 | 2.0 (2) | C18—C19—C20—C21 | −0.8 (2) |
| C7—C8—C9—C10 | −176.40 (13) | C19i—C19—C20—C21 | 178.91 (15) |
| C8—C9—C10—C14 | 159.96 (13) | C17—N3—C21—C20 | 0.7 (2) |
| C15—C9—C10—C14 | −18.3 (2) | C19—C20—C21—N3 | 0.1 (2) |
| H··· | ||||
| O1—H1A···N3ii | 0.84 | 1.80 | 2.6275 (14) | 168 |
| O3—H3A···N1iii | 0.84 | 1.75 | 2.5880 (14) | 173 |
| O6—H6A···N2iv | 0.84 | 1.82 | 2.6443 (14) | 168 |
| O7—H7A···O4 | 0.84 | 2.22 | 2.6538 (13) | 112 |
| C2—H2A···Cgv | 0.99 | 2.63 | 3.5579 (13) | 160 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1 | 0.84 | 1.80 | 2.6275 (14) | 168 |
| O3—H3 | 0.84 | 1.75 | 2.5880 (14) | 173 |
| O6—H6 | 0.84 | 1.82 | 2.6443 (14) | 168 |
| O7—H7 | 0.84 | 2.22 | 2.6538 (13) | 112 |
| C2—H2 | 0.99 | 2.63 | 3.5579 (13) | 160 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) . Cg is the centroid of the N3,C17–C21 ring.