Literature DB >> 21582193

4,4'-Bipyridine-2-hydroxy-propane-1,2,3-tricarboxylic acid (3/2).

Janet Soleimannejad, Hossein Aghabozorg, Shokoh Najafi, Mina Nasibipour, Jafar Attar Gharamaleki.   

Abstract

The combination of 2-hydroxy-propane-1,2,3-tricarboxylic acid (H(3)hypta, also called citric acid) and 4,4'-bipyridine (4,4'-bipy) in a 1:1.5 molar ratio leads to the formation of the title mol-ecular cocrystal, 1.5C(10)H(8)N(2C(6)H(8)O(7). The asymmetric unit contains one and a half 4,4'-bipy units, with one lying across a centre of inversion, and one H(3)hypta mol-ecule. The significant differences in the C-O bond distances support the existence of the un-ionized acid mol-ecule and confirm the formation of a cocrystal. There are π-π and C-H⋯π stacking inter-actions between the aromatic rings of 4,4'-bipy [with inter-planar distances of 3.7739 (8) and 3.7970 (8) Å] and between CH groups of H(3)hypta [with an H⋯π distance of 2.63 Å]. In the crystal structure, intermolecular O-H⋯N hydrogen bonds occur and an O-H⋯O hydrogen bond occurs within the citric acid moiety.

Entities:  

Year:  2009        PMID: 21582193      PMCID: PMC2968425          DOI: 10.1107/S1600536809004607

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature on cocrystals and hydrogen bonding, see: Aakeroy & Seddon (1993 ▶); Aghabozorg et al. (2006 ▶); Aghabozorg, Heidari et al. (2008 ▶); Aghabozorg, Manteghi & Sheshmani (2008 ▶); Baures (1999 ▶); Biradha et al. (1993 ▶); Desiraju (1989 ▶); Desiraju & Steiner (1999 ▶); Houk et al. (1999 ▶).

Experimental

Crystal data

1.5C10H8N2·C6H8O7 M = 426.40 Monoclinic, a = 7.0371 (2) Å b = 33.5054 (10) Å c = 8.4715 (2) Å β = 90.302 (2)° V = 1997.39 (9) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 150 K 0.31 × 0.26 × 0.22 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.896, T max = 0.977 63749 measured reflections 6045 independent reflections 4986 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.116 S = 1.05 6045 reflections 284 parameters H-atom parameters constrained Δρmax = 0.40 e Å−3 Δρmin = −0.24 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809004607/su2092sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809004607/su2092Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
1.5C10H8N2·C6H8O7F(000) = 892
Mr = 426.40Dx = 1.418 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 20381 reflections
a = 7.0371 (2) Åθ = 2.7–29.6°
b = 33.5054 (10) ŵ = 0.11 mm1
c = 8.4715 (2) ÅT = 150 K
β = 90.302 (2)°Block, yellow
V = 1997.39 (9) Å30.31 × 0.26 × 0.22 mm
Z = 4
Bruker SMART CCD area-detector diffractometer6045 independent reflections
Radiation source: fine-focus sealed tube4986 reflections with I > 2σ(I)
graphiteRint = 0.033
φ and ω scansθmax = 30.5°, θmin = 1.2°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −9→10
Tmin = 0.896, Tmax = 0.977k = −47→47
63749 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.116H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.046P)2 + 1.026P] where P = (Fo2 + 2Fc2)/3
6045 reflections(Δ/σ)max < 0.001
284 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.22826 (14)0.02331 (3)0.66535 (13)0.0327 (2)
H1A1.33590.02540.70780.049*
O21.27436 (15)0.08764 (3)0.60893 (15)0.0360 (3)
O30.85874 (15)0.12663 (3)0.72640 (11)0.0274 (2)
H3A0.88450.14640.78380.041*
O41.00936 (14)0.16212 (3)0.54053 (11)0.0258 (2)
O50.59732 (15)0.15627 (3)0.37884 (11)0.0274 (2)
O60.52218 (17)0.10777 (3)0.20888 (12)0.0339 (3)
H6A0.48240.12700.15410.051*
O70.99435 (14)0.10297 (3)0.33252 (10)0.02327 (19)
H7A1.08020.12000.34670.035*
C11.17363 (18)0.05848 (4)0.61136 (14)0.0207 (2)
C20.97059 (17)0.05761 (3)0.55534 (15)0.0195 (2)
H2A0.88840.05160.64680.023*
H2B0.95610.03540.47890.023*
C30.89834 (17)0.09596 (3)0.47738 (13)0.0173 (2)
C40.68742 (18)0.08896 (4)0.43974 (15)0.0208 (2)
H4A0.67410.06320.38320.025*
H4B0.61680.08670.54010.025*
C50.59840 (18)0.12151 (4)0.34080 (14)0.0206 (2)
C60.92786 (18)0.13235 (3)0.58559 (14)0.0194 (2)
N10.42826 (18)0.31593 (3)0.42264 (13)0.0263 (2)
N20.42914 (18)0.16451 (3)1.00572 (14)0.0278 (2)
C70.4111 (2)0.32444 (4)0.57535 (16)0.0285 (3)
H70.39260.35150.60500.034*
C80.4188 (2)0.29590 (4)0.69282 (15)0.0262 (3)
H80.40640.30340.80040.031*
C90.44484 (18)0.25603 (4)0.65244 (14)0.0206 (2)
C100.44274 (18)0.22416 (4)0.77407 (14)0.0203 (2)
C110.4672 (2)0.23319 (4)0.93413 (15)0.0262 (3)
H110.48870.25990.96700.031*
C120.4597 (2)0.20272 (4)1.04392 (16)0.0291 (3)
H120.47720.20931.15210.035*
C130.4046 (2)0.15593 (4)0.85302 (16)0.0275 (3)
H130.38240.12890.82400.033*
C140.4101 (2)0.18445 (4)0.73488 (15)0.0243 (3)
H140.39170.17690.62780.029*
C150.4680 (2)0.24726 (4)0.49209 (15)0.0262 (3)
H150.48990.22060.45870.031*
C160.4587 (2)0.27789 (4)0.38298 (15)0.0282 (3)
H160.47470.27160.27450.034*
N30.56382 (16)0.01882 (4)0.80165 (13)0.0261 (2)
C170.6626 (2)−0.01444 (4)0.77585 (17)0.0292 (3)
H170.6137−0.03320.70210.035*
C180.83276 (19)−0.02304 (4)0.85097 (16)0.0257 (3)
H180.8979−0.04720.82860.031*
C190.90778 (16)0.00392 (4)0.95940 (13)0.0183 (2)
C200.8034 (2)0.03831 (4)0.98728 (16)0.0274 (3)
H200.84780.05751.06130.033*
C210.6342 (2)0.04450 (4)0.90668 (17)0.0295 (3)
H210.56490.06820.92740.035*
U11U22U33U12U13U23
O10.0243 (5)0.0270 (5)0.0467 (6)0.0001 (4)−0.0148 (4)0.0088 (4)
O20.0232 (5)0.0249 (5)0.0597 (7)−0.0039 (4)−0.0068 (5)0.0009 (5)
O30.0403 (6)0.0231 (5)0.0190 (4)−0.0043 (4)0.0041 (4)−0.0039 (3)
O40.0326 (5)0.0186 (4)0.0262 (5)−0.0057 (4)−0.0031 (4)0.0012 (3)
O50.0372 (6)0.0198 (4)0.0250 (5)0.0051 (4)−0.0040 (4)−0.0013 (3)
O60.0534 (7)0.0212 (5)0.0269 (5)0.0017 (4)−0.0190 (5)0.0016 (4)
O70.0287 (5)0.0223 (4)0.0189 (4)−0.0030 (3)0.0044 (3)−0.0009 (3)
C10.0199 (6)0.0214 (6)0.0207 (6)0.0014 (4)−0.0018 (4)−0.0021 (4)
C20.0196 (6)0.0158 (5)0.0231 (6)0.0000 (4)−0.0042 (4)0.0014 (4)
C30.0200 (6)0.0153 (5)0.0165 (5)−0.0001 (4)−0.0003 (4)0.0000 (4)
C40.0208 (6)0.0177 (5)0.0238 (6)−0.0007 (4)−0.0053 (4)0.0034 (4)
C50.0218 (6)0.0200 (5)0.0200 (6)0.0016 (4)−0.0011 (4)0.0022 (4)
C60.0221 (6)0.0172 (5)0.0190 (5)0.0012 (4)−0.0030 (4)−0.0008 (4)
N10.0366 (6)0.0232 (5)0.0193 (5)0.0002 (4)0.0017 (4)0.0028 (4)
N20.0362 (6)0.0247 (5)0.0225 (5)0.0027 (5)−0.0070 (5)0.0041 (4)
C70.0443 (8)0.0197 (6)0.0214 (6)0.0031 (5)0.0013 (5)0.0003 (5)
C80.0405 (8)0.0215 (6)0.0164 (6)0.0039 (5)0.0013 (5)−0.0005 (4)
C90.0239 (6)0.0205 (5)0.0175 (5)0.0026 (4)−0.0006 (4)0.0008 (4)
C100.0216 (6)0.0214 (6)0.0178 (5)0.0036 (4)−0.0013 (4)0.0010 (4)
C110.0379 (7)0.0211 (6)0.0196 (6)0.0038 (5)−0.0045 (5)−0.0003 (4)
C120.0430 (8)0.0255 (6)0.0188 (6)0.0047 (6)−0.0061 (5)0.0011 (5)
C130.0348 (7)0.0216 (6)0.0259 (6)0.0005 (5)−0.0072 (5)0.0013 (5)
C140.0296 (7)0.0234 (6)0.0198 (6)0.0014 (5)−0.0037 (5)−0.0009 (4)
C150.0389 (8)0.0200 (6)0.0198 (6)0.0041 (5)0.0028 (5)−0.0019 (4)
C160.0419 (8)0.0258 (6)0.0168 (6)0.0025 (5)0.0037 (5)−0.0005 (5)
N30.0197 (5)0.0314 (6)0.0272 (6)0.0009 (4)−0.0037 (4)0.0068 (4)
C170.0244 (7)0.0292 (7)0.0338 (7)−0.0025 (5)−0.0087 (5)−0.0018 (5)
C180.0229 (6)0.0208 (6)0.0333 (7)0.0032 (5)−0.0062 (5)−0.0041 (5)
C190.0176 (5)0.0203 (5)0.0169 (5)0.0015 (4)−0.0009 (4)0.0017 (4)
C200.0278 (7)0.0268 (6)0.0274 (6)0.0086 (5)−0.0065 (5)−0.0057 (5)
C210.0277 (7)0.0300 (7)0.0306 (7)0.0114 (5)−0.0046 (5)−0.0002 (5)
O1—C11.3205 (15)C8—C91.3915 (17)
O1—H1A0.8400C8—H80.9500
O2—C11.2073 (16)C9—C151.4002 (17)
O3—C61.3048 (15)C9—C101.4838 (17)
O3—H3A0.8400C10—C141.3902 (17)
O4—C61.2131 (15)C10—C111.3990 (17)
O5—C51.2084 (15)C11—C121.3820 (18)
O6—C51.3200 (15)C11—H110.9500
O6—H6A0.8400C12—H120.9500
O7—C31.4235 (14)C13—C141.3844 (18)
O7—H7A0.8400C13—H130.9500
C1—C21.5035 (17)C14—H140.9500
C2—C31.5306 (16)C15—C161.3825 (18)
C2—H2A0.9900C15—H150.9500
C2—H2B0.9900C16—H160.9500
C3—C41.5345 (17)N3—C211.3313 (18)
C3—C61.5389 (16)N3—C171.3323 (18)
C4—C51.5096 (16)C17—C181.3832 (18)
C4—H4A0.9900C17—H170.9500
C4—H4B0.9900C18—C191.3906 (17)
N1—C71.3309 (17)C18—H180.9500
N1—C161.3357 (17)C19—C201.3875 (17)
N2—C131.3355 (17)C19—C19i1.489 (2)
N2—C121.3379 (18)C20—C211.3851 (18)
C7—C81.3810 (18)C20—H200.9500
C7—H70.9500C21—H210.9500
C1—O1—H1A109.5C8—C9—C10121.22 (11)
C6—O3—H3A109.5C15—C9—C10121.63 (11)
C5—O6—H6A109.5C14—C10—C11117.23 (11)
C3—O7—H7A109.5C14—C10—C9121.67 (11)
O2—C1—O1123.93 (12)C11—C10—C9121.06 (11)
O2—C1—C2124.57 (11)C12—C11—C10119.19 (12)
O1—C1—C2111.49 (10)C12—C11—H11120.4
C1—C2—C3115.65 (10)C10—C11—H11120.4
C1—C2—H2A108.4N2—C12—C11123.41 (12)
C3—C2—H2A108.4N2—C12—H12118.3
C1—C2—H2B108.4C11—C12—H12118.3
C3—C2—H2B108.4N2—C13—C14123.22 (12)
H2A—C2—H2B107.4N2—C13—H13118.4
O7—C3—C2110.63 (10)C14—C13—H13118.4
O7—C3—C4108.00 (9)C13—C14—C10119.55 (12)
C2—C3—C4106.27 (9)C13—C14—H14120.2
O7—C3—C6108.65 (9)C10—C14—H14120.2
C2—C3—C6111.39 (9)C16—C15—C9119.18 (12)
C4—C3—C6111.86 (10)C16—C15—H15120.4
C5—C4—C3113.77 (10)C9—C15—H15120.4
C5—C4—H4A108.8N1—C16—C15123.18 (12)
C3—C4—H4A108.8N1—C16—H16118.4
C5—C4—H4B108.8C15—C16—H16118.4
C3—C4—H4B108.8C21—N3—C17117.24 (11)
H4A—C4—H4B107.7N3—C17—C18123.37 (13)
O5—C5—O6123.98 (11)N3—C17—H17118.3
O5—C5—C4123.46 (11)C18—C17—H17118.3
O6—C5—C4112.56 (10)C17—C18—C19119.56 (12)
O4—C6—O3125.98 (11)C17—C18—H18120.2
O4—C6—C3121.77 (11)C19—C18—H18120.2
O3—C6—C3112.24 (10)C20—C19—C18116.91 (11)
C7—N1—C16117.68 (11)C20—C19—C19i121.93 (14)
C13—N2—C12117.39 (12)C18—C19—C19i121.17 (13)
N1—C7—C8123.27 (12)C21—C20—C19119.66 (12)
N1—C7—H7118.4C21—C20—H20120.2
C8—C7—H7118.4C19—C20—H20120.2
C7—C8—C9119.50 (12)N3—C21—C20123.26 (13)
C7—C8—H8120.2N3—C21—H21118.4
C9—C8—H8120.2C20—C21—H21118.4
C8—C9—C15117.13 (11)
O2—C1—C2—C35.62 (19)C8—C9—C10—C11−17.8 (2)
O1—C1—C2—C3−174.98 (11)C15—C9—C10—C11163.88 (13)
C1—C2—C3—O766.37 (13)C14—C10—C11—C120.6 (2)
C1—C2—C3—C4−176.64 (10)C9—C10—C11—C12178.46 (13)
C1—C2—C3—C6−54.58 (14)C13—N2—C12—C11−0.1 (2)
O7—C3—C4—C5−52.92 (13)C10—C11—C12—N2−0.3 (2)
C2—C3—C4—C5−171.64 (10)C12—N2—C13—C140.2 (2)
C6—C3—C4—C566.59 (13)N2—C13—C14—C100.1 (2)
C3—C4—C5—O5−56.85 (17)C11—C10—C14—C13−0.5 (2)
C3—C4—C5—O6123.21 (12)C9—C10—C14—C13−178.34 (13)
O7—C3—C6—O44.99 (16)C8—C9—C15—C16−1.8 (2)
C2—C3—C6—O4127.10 (12)C10—C9—C15—C16176.56 (13)
C4—C3—C6—O4−114.14 (13)C7—N1—C16—C151.7 (2)
O7—C3—C6—O3−174.06 (10)C9—C15—C16—N10.0 (2)
C2—C3—C6—O3−51.95 (14)C21—N3—C17—C18−0.6 (2)
C4—C3—C6—O366.82 (13)N3—C17—C18—C19−0.1 (2)
C16—N1—C7—C8−1.6 (2)C17—C18—C19—C200.8 (2)
N1—C7—C8—C9−0.3 (2)C17—C18—C19—C19i−178.91 (15)
C7—C8—C9—C152.0 (2)C18—C19—C20—C21−0.8 (2)
C7—C8—C9—C10−176.40 (13)C19i—C19—C20—C21178.91 (15)
C8—C9—C10—C14159.96 (13)C17—N3—C21—C200.7 (2)
C15—C9—C10—C14−18.3 (2)C19—C20—C21—N30.1 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1A···N3ii0.841.802.6275 (14)168
O3—H3A···N1iii0.841.752.5880 (14)173
O6—H6A···N2iv0.841.822.6443 (14)168
O7—H7A···O40.842.222.6538 (13)112
C2—H2A···Cgv0.992.633.5579 (13)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯N3i0.841.802.6275 (14)168
O3—H3A⋯N1ii0.841.752.5880 (14)173
O6—H6A⋯N2iii0.841.822.6443 (14)168
O7—H7A⋯O40.842.222.6538 (13)112
C2—H2ACgiv0.992.633.5579 (13)160

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) . Cg is the centroid of the N3,C17–C21 ring.

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