Literature DB >> 22199823

2,3-Diamino-pyridinium 6-carb-oxy-pyridine-2-carboxyl-ate.

Mahsa Foroughian, Alireza Foroumadi, Behrouz Notash, Giuseppe Bruno, Hadi Amiri Rudbari, Hossein Aghabozorg.   

Abstract

The asymmetric unit of the title proton-transfer compound, C(5)H(8)N(3) (+)·C(7)H(4)NO(4) (-), consists of one mono-deprotonated pyridine-2,6-dicarb-oxy-lic acid as anion and one protonated 2,3-diamino-pyridine as cation. The crystal packing shows extensive O-H⋯O, N-H⋯O and N-H⋯N hydrogen bonds. Thre are also several π-π inter-actions between the anions and also between the cations [centriod-centroid distances = 3.6634 (7), 3.7269 (7), 3.6705 (7) and 3.4164 (7) Å].

Entities:  

Year:  2011        PMID: 22199823      PMCID: PMC3238974          DOI: 10.1107/S1600536811047647

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to proton-transfer compounds, see: Aghabozorg et al. (2008b ▶). For related structures, see: Aghabozorg et al. (2008a ▶, 2011a ▶,b ▶); Sharif et al. (2010 ▶).

Experimental

Crystal data

C5H8N3 +·C7H4NO4 M = 276.26 Triclinic, a = 6.9138 (1) Å b = 8.3364 (2) Å c = 11.2358 (2) Å α = 81.448 (1)° β = 73.831 (1)° γ = 82.486 (1)° V = 612.33 (2) Å3 Z = 2 Mo Kα radiation μ = 0.12 mm−1 T = 296 K 0.24 × 0.20 × 0.12 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.706, T max = 0.746 34839 measured reflections 2654 independent reflections 2348 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.107 S = 1.07 2654 reflections 194 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.17 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811047647/bt5705sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811047647/bt5705Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811047647/bt5705Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H8N3+·C7H4NO4Z = 2
Mr = 276.26F(000) = 288
Triclinic, P1Dx = 1.498 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.9138 (1) ÅCell parameters from 9842 reflections
b = 8.3364 (2) Åθ = 2.9–30.0°
c = 11.2358 (2) ŵ = 0.12 mm1
α = 81.448 (1)°T = 296 K
β = 73.831 (1)°Irregular, colorless
γ = 82.486 (1)°0.24 × 0.20 × 0.12 mm
V = 612.33 (2) Å3
Bruker APEXII CCD diffractometer2654 independent reflections
Radiation source: fine-focus sealed tube2348 reflections with I > 2σ(I)
graphiteRint = 0.025
φ and ω scansθmax = 27.0°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −8→8
Tmin = 0.706, Tmax = 0.746k = −10→10
34839 measured reflectionsl = −14→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.107w = 1/[σ2(Fo2) + (0.060P)2 + 0.1194P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
2654 reflectionsΔρmax = 0.30 e Å3
194 parametersΔρmin = −0.17 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.00070 (17)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O30.64901 (16)0.46889 (11)0.60916 (9)0.0508 (3)
O20.91253 (17)−0.01029 (10)0.21751 (8)0.0479 (3)
O10.91229 (15)−0.25266 (10)0.32864 (8)0.0419 (2)
O40.83898 (16)0.45238 (11)0.41533 (8)0.0480 (3)
C80.72493 (16)0.42375 (14)0.08478 (10)0.0310 (2)
N40.85753 (15)0.42597 (12)−0.13478 (9)0.0352 (2)
H0.91150.3742−0.19860.042*
N10.79718 (13)0.13922 (10)0.42873 (8)0.0271 (2)
C90.81096 (17)0.33895 (14)−0.02186 (10)0.0314 (2)
C100.8247 (2)0.59072 (16)−0.15453 (11)0.0400 (3)
H100.86050.6451−0.23490.048*
N30.84405 (18)0.17690 (13)−0.01308 (10)0.0451 (3)
H3A0.89470.1294−0.07930.054*
H3B0.81480.11990.05880.054*
C110.7393 (2)0.67446 (15)−0.05574 (12)0.0417 (3)
H110.71300.7872−0.06750.050*
C120.69064 (19)0.58993 (15)0.06456 (11)0.0379 (3)
H120.63360.64810.13240.045*
C70.73268 (17)0.39063 (13)0.52423 (10)0.0319 (3)
C60.72505 (16)0.20977 (13)0.53341 (10)0.0276 (2)
C20.79375 (15)−0.02216 (12)0.43816 (9)0.0262 (2)
C10.87808 (17)−0.10003 (13)0.31804 (10)0.0299 (2)
C30.71865 (17)−0.11635 (13)0.55079 (10)0.0307 (2)
H30.7201−0.22860.55410.037*
C40.64189 (18)−0.04065 (14)0.65777 (11)0.0350 (3)
H40.5889−0.10070.73400.042*
C50.64532 (18)0.12568 (14)0.64934 (10)0.0332 (3)
H50.59530.18020.71970.040*
N20.67215 (18)0.33369 (15)0.20004 (10)0.0402 (3)
H2A0.755 (3)0.253 (2)0.2184 (16)0.057 (5)*
H2B0.625 (3)0.397 (2)0.2583 (17)0.057 (5)*
H10.840 (3)0.560 (2)0.4101 (17)0.067 (5)*
U11U22U33U12U13U23
O30.0713 (7)0.0303 (5)0.0412 (5)−0.0035 (4)0.0066 (4)−0.0163 (4)
O20.0818 (7)0.0281 (4)0.0250 (4)0.0055 (4)−0.0045 (4)−0.0033 (3)
O10.0636 (6)0.0200 (4)0.0345 (5)−0.0030 (4)0.0009 (4)−0.0068 (3)
O40.0736 (7)0.0227 (4)0.0374 (5)−0.0120 (4)0.0082 (4)−0.0080 (3)
C80.0314 (5)0.0338 (6)0.0267 (5)−0.0006 (4)−0.0060 (4)−0.0059 (4)
N40.0408 (5)0.0369 (5)0.0247 (5)0.0027 (4)−0.0051 (4)−0.0064 (4)
N10.0332 (5)0.0206 (4)0.0257 (4)−0.0017 (3)−0.0049 (3)−0.0040 (3)
C90.0327 (5)0.0319 (6)0.0285 (5)0.0003 (4)−0.0071 (4)−0.0054 (4)
C100.0457 (7)0.0385 (6)0.0311 (6)0.0024 (5)−0.0092 (5)0.0028 (5)
N30.0653 (7)0.0318 (5)0.0317 (5)0.0031 (5)−0.0038 (5)−0.0069 (4)
C110.0500 (7)0.0299 (6)0.0420 (7)0.0053 (5)−0.0121 (5)−0.0025 (5)
C120.0430 (6)0.0356 (6)0.0331 (6)0.0044 (5)−0.0069 (5)−0.0110 (5)
C70.0378 (6)0.0252 (5)0.0312 (5)−0.0023 (4)−0.0046 (4)−0.0076 (4)
C60.0303 (5)0.0233 (5)0.0283 (5)−0.0015 (4)−0.0050 (4)−0.0058 (4)
C20.0303 (5)0.0211 (5)0.0267 (5)−0.0005 (4)−0.0072 (4)−0.0035 (4)
C10.0384 (6)0.0220 (5)0.0280 (5)−0.0016 (4)−0.0064 (4)−0.0046 (4)
C30.0384 (6)0.0209 (5)0.0309 (5)−0.0033 (4)−0.0073 (4)−0.0008 (4)
C40.0421 (6)0.0314 (6)0.0269 (5)−0.0057 (5)−0.0030 (4)0.0011 (4)
C50.0395 (6)0.0313 (6)0.0257 (5)−0.0022 (4)−0.0017 (4)−0.0077 (4)
N20.0489 (6)0.0394 (6)0.0263 (5)0.0006 (5)−0.0022 (4)−0.0043 (4)
O3—C71.2041 (14)N3—H3A0.8600
O2—C11.2401 (14)N3—H3B0.8600
O1—C11.2574 (13)C11—C121.4008 (18)
O4—C71.3088 (14)C11—H110.9300
O4—H10.89 (2)C12—H120.9300
C8—C121.3702 (17)C7—C61.5028 (15)
C8—N21.3760 (15)C6—C51.3862 (15)
C8—C91.4262 (15)C2—C31.3903 (14)
N4—C91.3414 (14)C2—C11.5185 (14)
N4—C101.3575 (16)C3—C41.3811 (16)
N4—H0.8600C3—H30.9300
N1—C61.3343 (14)C4—C51.3786 (16)
N1—C21.3365 (13)C4—H40.9300
C9—N31.3338 (15)C5—H50.9300
C10—C111.3512 (18)N2—H2A0.868 (19)
C10—H100.9300N2—H2B0.87 (2)
C7—O4—H1112.4 (12)O3—C7—C6122.78 (10)
C12—C8—N2124.24 (10)O4—C7—C6112.99 (9)
C12—C8—C9117.42 (10)N1—C6—C5123.76 (10)
N2—C8—C9118.25 (10)N1—C6—C7117.67 (9)
C9—N4—C10124.00 (10)C5—C6—C7118.57 (10)
C9—N4—H118.0N1—C2—C3122.83 (9)
C10—N4—H118.0N1—C2—C1116.38 (9)
C6—N1—C2117.28 (9)C3—C2—C1120.79 (9)
N3—C9—N4119.21 (10)O2—C1—O1124.63 (10)
N3—C9—C8122.31 (10)O2—C1—C2118.57 (9)
N4—C9—C8118.47 (10)O1—C1—C2116.78 (9)
C11—C10—N4119.02 (11)C4—C3—C2118.99 (10)
C11—C10—H10120.5C4—C3—H3120.5
N4—C10—H10120.5C2—C3—H3120.5
C9—N3—H3A120.0C5—C4—C3118.73 (10)
C9—N3—H3B120.0C5—C4—H4120.6
H3A—N3—H3B120.0C3—C4—H4120.6
C10—C11—C12119.37 (11)C4—C5—C6118.40 (10)
C10—C11—H11120.3C4—C5—H5120.8
C12—C11—H11120.3C6—C5—H5120.8
C8—C12—C11121.69 (11)C8—N2—H2A118.7 (12)
C8—C12—H12119.2C8—N2—H2B110.6 (12)
C11—C12—H12119.2H2A—N2—H2B113.8 (16)
O3—C7—O4124.23 (10)
C10—N4—C9—N3178.04 (12)O3—C7—C6—C5−10.12 (18)
C10—N4—C9—C8−1.15 (17)O4—C7—C6—C5169.81 (11)
C12—C8—C9—N3−177.65 (11)C6—N1—C2—C30.21 (16)
N2—C8—C9—N3−0.97 (17)C6—N1—C2—C1−179.54 (9)
C12—C8—C9—N41.52 (16)N1—C2—C1—O2−11.91 (15)
N2—C8—C9—N4178.20 (10)C3—C2—C1—O2168.34 (11)
C9—N4—C10—C11−0.31 (19)N1—C2—C1—O1166.52 (10)
N4—C10—C11—C121.3 (2)C3—C2—C1—O1−13.22 (16)
N2—C8—C12—C11−176.99 (12)N1—C2—C3—C40.76 (17)
C9—C8—C12—C11−0.54 (18)C1—C2—C3—C4−179.51 (10)
C10—C11—C12—C8−0.9 (2)C2—C3—C4—C5−0.98 (17)
C2—N1—C6—C5−0.96 (16)C3—C4—C5—C60.29 (18)
C2—N1—C6—C7178.62 (9)N1—C6—C5—C40.71 (18)
O3—C7—C6—N1170.28 (12)C7—C6—C5—C4−178.86 (10)
O4—C7—C6—N1−9.79 (15)
D—H···AD—HH···AD···AD—H···A
N4—H···O1i0.861.942.7872 (12)167.
N2—H2B···O3ii0.87 (2)2.329 (19)3.1108 (14)150.0 (15)
N3—H3A···O2i0.862.032.8674 (14)163.
N3—H3B···O20.862.172.9427 (14)149.
O4—H1···O1iii0.89 (2)1.75 (2)2.5673 (12)151.9 (18)
N2—H2A···O20.868 (19)2.32 (2)3.1290 (15)156.0 (16)
N2—H2A···N10.868 (19)2.491 (18)3.0999 (14)127.8 (15)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H⋯O1i0.861.942.7872 (12)167
N2—H2B⋯O3ii0.87 (2)2.329 (19)3.1108 (14)150.0 (15)
N3—H3A⋯O2i0.862.032.8674 (14)163
N3—H3B⋯O20.862.172.9427 (14)149
O4—H1⋯O1iii0.89 (2)1.75 (2)2.5673 (12)151.9 (18)
N2—H2A⋯O20.868 (19)2.32 (2)3.1290 (15)156.0 (16)
N2—H2A⋯N10.868 (19)2.491 (18)3.0999 (14)127.8 (15)

Symmetry codes: (i) ; (ii) ; (iii) .

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1.  Bis(dicyclo-hexyl-aminium) 2-carb-oxy-methyl-2-hy-droxy-succinate ethanol monosolvate.

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