| Literature DB >> 22199823 |
Mahsa Foroughian, Alireza Foroumadi, Behrouz Notash, Giuseppe Bruno, Hadi Amiri Rudbari, Hossein Aghabozorg.
Abstract
The asymmetric unit of the title proton-transfer compound, C(5)H(8)N(3) (+)·C(7)H(4)NO(4) (-), consists of one mono-deprotonated pyridine-2,6-dicarb-oxy-lic acid as anion and one protonated 2,3-diamino-pyridine as cation. The crystal packing shows extensive O-H⋯O, N-H⋯O and N-H⋯N hydrogen bonds. Thre are also several π-π inter-actions between the anions and also between the cations [centriod-centroid distances = 3.6634 (7), 3.7269 (7), 3.6705 (7) and 3.4164 (7) Å].Entities:
Year: 2011 PMID: 22199823 PMCID: PMC3238974 DOI: 10.1107/S1600536811047647
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H8N3+·C7H4NO4− | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 9842 reflections | |
| θ = 2.9–30.0° | |
| µ = 0.12 mm−1 | |
| α = 81.448 (1)° | |
| β = 73.831 (1)° | Irregular, colorless |
| γ = 82.486 (1)° | 0.24 × 0.20 × 0.12 mm |
| Bruker APEXII CCD diffractometer | 2654 independent reflections |
| Radiation source: fine-focus sealed tube | 2348 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.0°, θmin = 2.5° |
| Absorption correction: multi-scan ( | |
| 34839 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 2654 reflections | Δρmax = 0.30 e Å−3 |
| 194 parameters | Δρmin = −0.17 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.00070 (17) |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| O3 | 0.64901 (16) | 0.46889 (11) | 0.60916 (9) | 0.0508 (3) | |
| O2 | 0.91253 (17) | −0.01029 (10) | 0.21751 (8) | 0.0479 (3) | |
| O1 | 0.91229 (15) | −0.25266 (10) | 0.32864 (8) | 0.0419 (2) | |
| O4 | 0.83898 (16) | 0.45238 (11) | 0.41533 (8) | 0.0480 (3) | |
| C8 | 0.72493 (16) | 0.42375 (14) | 0.08478 (10) | 0.0310 (2) | |
| N4 | 0.85753 (15) | 0.42597 (12) | −0.13478 (9) | 0.0352 (2) | |
| H | 0.9115 | 0.3742 | −0.1986 | 0.042* | |
| N1 | 0.79718 (13) | 0.13922 (10) | 0.42873 (8) | 0.0271 (2) | |
| C9 | 0.81096 (17) | 0.33895 (14) | −0.02186 (10) | 0.0314 (2) | |
| C10 | 0.8247 (2) | 0.59072 (16) | −0.15453 (11) | 0.0400 (3) | |
| H10 | 0.8605 | 0.6451 | −0.2349 | 0.048* | |
| N3 | 0.84405 (18) | 0.17690 (13) | −0.01308 (10) | 0.0451 (3) | |
| H3A | 0.8947 | 0.1294 | −0.0793 | 0.054* | |
| H3B | 0.8148 | 0.1199 | 0.0588 | 0.054* | |
| C11 | 0.7393 (2) | 0.67446 (15) | −0.05574 (12) | 0.0417 (3) | |
| H11 | 0.7130 | 0.7872 | −0.0675 | 0.050* | |
| C12 | 0.69064 (19) | 0.58993 (15) | 0.06456 (11) | 0.0379 (3) | |
| H12 | 0.6336 | 0.6481 | 0.1324 | 0.045* | |
| C7 | 0.73268 (17) | 0.39063 (13) | 0.52423 (10) | 0.0319 (3) | |
| C6 | 0.72505 (16) | 0.20977 (13) | 0.53341 (10) | 0.0276 (2) | |
| C2 | 0.79375 (15) | −0.02216 (12) | 0.43816 (9) | 0.0262 (2) | |
| C1 | 0.87808 (17) | −0.10003 (13) | 0.31804 (10) | 0.0299 (2) | |
| C3 | 0.71865 (17) | −0.11635 (13) | 0.55079 (10) | 0.0307 (2) | |
| H3 | 0.7201 | −0.2286 | 0.5541 | 0.037* | |
| C4 | 0.64189 (18) | −0.04065 (14) | 0.65777 (11) | 0.0350 (3) | |
| H4 | 0.5889 | −0.1007 | 0.7340 | 0.042* | |
| C5 | 0.64532 (18) | 0.12568 (14) | 0.64934 (10) | 0.0332 (3) | |
| H5 | 0.5953 | 0.1802 | 0.7197 | 0.040* | |
| N2 | 0.67215 (18) | 0.33369 (15) | 0.20004 (10) | 0.0402 (3) | |
| H2A | 0.755 (3) | 0.253 (2) | 0.2184 (16) | 0.057 (5)* | |
| H2B | 0.625 (3) | 0.397 (2) | 0.2583 (17) | 0.057 (5)* | |
| H1 | 0.840 (3) | 0.560 (2) | 0.4101 (17) | 0.067 (5)* |
| O3 | 0.0713 (7) | 0.0303 (5) | 0.0412 (5) | −0.0035 (4) | 0.0066 (4) | −0.0163 (4) |
| O2 | 0.0818 (7) | 0.0281 (4) | 0.0250 (4) | 0.0055 (4) | −0.0045 (4) | −0.0033 (3) |
| O1 | 0.0636 (6) | 0.0200 (4) | 0.0345 (5) | −0.0030 (4) | 0.0009 (4) | −0.0068 (3) |
| O4 | 0.0736 (7) | 0.0227 (4) | 0.0374 (5) | −0.0120 (4) | 0.0082 (4) | −0.0080 (3) |
| C8 | 0.0314 (5) | 0.0338 (6) | 0.0267 (5) | −0.0006 (4) | −0.0060 (4) | −0.0059 (4) |
| N4 | 0.0408 (5) | 0.0369 (5) | 0.0247 (5) | 0.0027 (4) | −0.0051 (4) | −0.0064 (4) |
| N1 | 0.0332 (5) | 0.0206 (4) | 0.0257 (4) | −0.0017 (3) | −0.0049 (3) | −0.0040 (3) |
| C9 | 0.0327 (5) | 0.0319 (6) | 0.0285 (5) | 0.0003 (4) | −0.0071 (4) | −0.0054 (4) |
| C10 | 0.0457 (7) | 0.0385 (6) | 0.0311 (6) | 0.0024 (5) | −0.0092 (5) | 0.0028 (5) |
| N3 | 0.0653 (7) | 0.0318 (5) | 0.0317 (5) | 0.0031 (5) | −0.0038 (5) | −0.0069 (4) |
| C11 | 0.0500 (7) | 0.0299 (6) | 0.0420 (7) | 0.0053 (5) | −0.0121 (5) | −0.0025 (5) |
| C12 | 0.0430 (6) | 0.0356 (6) | 0.0331 (6) | 0.0044 (5) | −0.0069 (5) | −0.0110 (5) |
| C7 | 0.0378 (6) | 0.0252 (5) | 0.0312 (5) | −0.0023 (4) | −0.0046 (4) | −0.0076 (4) |
| C6 | 0.0303 (5) | 0.0233 (5) | 0.0283 (5) | −0.0015 (4) | −0.0050 (4) | −0.0058 (4) |
| C2 | 0.0303 (5) | 0.0211 (5) | 0.0267 (5) | −0.0005 (4) | −0.0072 (4) | −0.0035 (4) |
| C1 | 0.0384 (6) | 0.0220 (5) | 0.0280 (5) | −0.0016 (4) | −0.0064 (4) | −0.0046 (4) |
| C3 | 0.0384 (6) | 0.0209 (5) | 0.0309 (5) | −0.0033 (4) | −0.0073 (4) | −0.0008 (4) |
| C4 | 0.0421 (6) | 0.0314 (6) | 0.0269 (5) | −0.0057 (5) | −0.0030 (4) | 0.0011 (4) |
| C5 | 0.0395 (6) | 0.0313 (6) | 0.0257 (5) | −0.0022 (4) | −0.0017 (4) | −0.0077 (4) |
| N2 | 0.0489 (6) | 0.0394 (6) | 0.0263 (5) | 0.0006 (5) | −0.0022 (4) | −0.0043 (4) |
| O3—C7 | 1.2041 (14) | N3—H3A | 0.8600 |
| O2—C1 | 1.2401 (14) | N3—H3B | 0.8600 |
| O1—C1 | 1.2574 (13) | C11—C12 | 1.4008 (18) |
| O4—C7 | 1.3088 (14) | C11—H11 | 0.9300 |
| O4—H1 | 0.89 (2) | C12—H12 | 0.9300 |
| C8—C12 | 1.3702 (17) | C7—C6 | 1.5028 (15) |
| C8—N2 | 1.3760 (15) | C6—C5 | 1.3862 (15) |
| C8—C9 | 1.4262 (15) | C2—C3 | 1.3903 (14) |
| N4—C9 | 1.3414 (14) | C2—C1 | 1.5185 (14) |
| N4—C10 | 1.3575 (16) | C3—C4 | 1.3811 (16) |
| N4—H | 0.8600 | C3—H3 | 0.9300 |
| N1—C6 | 1.3343 (14) | C4—C5 | 1.3786 (16) |
| N1—C2 | 1.3365 (13) | C4—H4 | 0.9300 |
| C9—N3 | 1.3338 (15) | C5—H5 | 0.9300 |
| C10—C11 | 1.3512 (18) | N2—H2A | 0.868 (19) |
| C10—H10 | 0.9300 | N2—H2B | 0.87 (2) |
| C7—O4—H1 | 112.4 (12) | O3—C7—C6 | 122.78 (10) |
| C12—C8—N2 | 124.24 (10) | O4—C7—C6 | 112.99 (9) |
| C12—C8—C9 | 117.42 (10) | N1—C6—C5 | 123.76 (10) |
| N2—C8—C9 | 118.25 (10) | N1—C6—C7 | 117.67 (9) |
| C9—N4—C10 | 124.00 (10) | C5—C6—C7 | 118.57 (10) |
| C9—N4—H | 118.0 | N1—C2—C3 | 122.83 (9) |
| C10—N4—H | 118.0 | N1—C2—C1 | 116.38 (9) |
| C6—N1—C2 | 117.28 (9) | C3—C2—C1 | 120.79 (9) |
| N3—C9—N4 | 119.21 (10) | O2—C1—O1 | 124.63 (10) |
| N3—C9—C8 | 122.31 (10) | O2—C1—C2 | 118.57 (9) |
| N4—C9—C8 | 118.47 (10) | O1—C1—C2 | 116.78 (9) |
| C11—C10—N4 | 119.02 (11) | C4—C3—C2 | 118.99 (10) |
| C11—C10—H10 | 120.5 | C4—C3—H3 | 120.5 |
| N4—C10—H10 | 120.5 | C2—C3—H3 | 120.5 |
| C9—N3—H3A | 120.0 | C5—C4—C3 | 118.73 (10) |
| C9—N3—H3B | 120.0 | C5—C4—H4 | 120.6 |
| H3A—N3—H3B | 120.0 | C3—C4—H4 | 120.6 |
| C10—C11—C12 | 119.37 (11) | C4—C5—C6 | 118.40 (10) |
| C10—C11—H11 | 120.3 | C4—C5—H5 | 120.8 |
| C12—C11—H11 | 120.3 | C6—C5—H5 | 120.8 |
| C8—C12—C11 | 121.69 (11) | C8—N2—H2A | 118.7 (12) |
| C8—C12—H12 | 119.2 | C8—N2—H2B | 110.6 (12) |
| C11—C12—H12 | 119.2 | H2A—N2—H2B | 113.8 (16) |
| O3—C7—O4 | 124.23 (10) | ||
| C10—N4—C9—N3 | 178.04 (12) | O3—C7—C6—C5 | −10.12 (18) |
| C10—N4—C9—C8 | −1.15 (17) | O4—C7—C6—C5 | 169.81 (11) |
| C12—C8—C9—N3 | −177.65 (11) | C6—N1—C2—C3 | 0.21 (16) |
| N2—C8—C9—N3 | −0.97 (17) | C6—N1—C2—C1 | −179.54 (9) |
| C12—C8—C9—N4 | 1.52 (16) | N1—C2—C1—O2 | −11.91 (15) |
| N2—C8—C9—N4 | 178.20 (10) | C3—C2—C1—O2 | 168.34 (11) |
| C9—N4—C10—C11 | −0.31 (19) | N1—C2—C1—O1 | 166.52 (10) |
| N4—C10—C11—C12 | 1.3 (2) | C3—C2—C1—O1 | −13.22 (16) |
| N2—C8—C12—C11 | −176.99 (12) | N1—C2—C3—C4 | 0.76 (17) |
| C9—C8—C12—C11 | −0.54 (18) | C1—C2—C3—C4 | −179.51 (10) |
| C10—C11—C12—C8 | −0.9 (2) | C2—C3—C4—C5 | −0.98 (17) |
| C2—N1—C6—C5 | −0.96 (16) | C3—C4—C5—C6 | 0.29 (18) |
| C2—N1—C6—C7 | 178.62 (9) | N1—C6—C5—C4 | 0.71 (18) |
| O3—C7—C6—N1 | 170.28 (12) | C7—C6—C5—C4 | −178.86 (10) |
| O4—C7—C6—N1 | −9.79 (15) |
| H··· | ||||
| N4—H···O1i | 0.86 | 1.94 | 2.7872 (12) | 167. |
| N2—H2B···O3ii | 0.87 (2) | 2.329 (19) | 3.1108 (14) | 150.0 (15) |
| N3—H3A···O2i | 0.86 | 2.03 | 2.8674 (14) | 163. |
| N3—H3B···O2 | 0.86 | 2.17 | 2.9427 (14) | 149. |
| O4—H1···O1iii | 0.89 (2) | 1.75 (2) | 2.5673 (12) | 151.9 (18) |
| N2—H2A···O2 | 0.868 (19) | 2.32 (2) | 3.1290 (15) | 156.0 (16) |
| N2—H2A···N1 | 0.868 (19) | 2.491 (18) | 3.0999 (14) | 127.8 (15) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N4—H⋯O1i | 0.86 | 1.94 | 2.7872 (12) | 167 |
| N2—H2 | 0.87 (2) | 2.329 (19) | 3.1108 (14) | 150.0 (15) |
| N3—H3 | 0.86 | 2.03 | 2.8674 (14) | 163 |
| N3—H3 | 0.86 | 2.17 | 2.9427 (14) | 149 |
| O4—H1⋯O1iii | 0.89 (2) | 1.75 (2) | 2.5673 (12) | 151.9 (18) |
| N2—H2 | 0.868 (19) | 2.32 (2) | 3.1290 (15) | 156.0 (16) |
| N2—H2 | 0.868 (19) | 2.491 (18) | 3.0999 (14) | 127.8 (15) |
Symmetry codes: (i) ; (ii) ; (iii) .