| Literature DB >> 21202314 |
Safa'a Fares Kayed, Yang Farina, Ibrahim Baba, Jim Simpson.
Abstract
The title compound, C(10)H(13)N(3)O(2)S, was prepared by condensation of 3,4-dihydroxy-benzaldehyde with 4-ethyl-3-thio-semicarbazide. The mol-ecule adopts an E configuration with respect to the C=N bond. One of the OH substituents on the dihydroxy-benzene ring is disordered over the two possible 3-positions on either side of the ordered 4-hydr-oxy group. The occupancy of the major disorder component refined to 0.633 (7). The mol-ecule is essentially planar, with an r.m.s. deviation through all non-H atoms of 0.0862 Å. An intra-molecular N-H⋯N hydrogen bond forms between the outer amine residue and the imine N atom, generating an S(5) ring motif and contributing to the planarity of the mol-ecule. In the crystal structure, an extensive network of classical O-H⋯O, O-H⋯S and N-H⋯S hydrogen bonds and weak C-H⋯O and S⋯O [3.301 (3) Å] inter-actions link mol-ecules into sheets running approximately parallel to the ab plane.Entities:
Year: 2008 PMID: 21202314 PMCID: PMC2961087 DOI: 10.1107/S1600536808009148
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H13N3O2S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3071 reflections |
| θ = 2.6–25.0º | |
| µ = 0.28 mm−1 | |
| β = 107.910 (4)º | Block, red |
| 0.44 × 0.11 × 0.09 mm | |
| Bruker APEXII CCD area-detector diffractometer | 1998 independent reflections |
| Radiation source: fine-focus sealed tube | 1507 reflections with |
| Monochromator: graphite | |
| θmax = 25.1º | |
| ω scans | θmin = 3.1º |
| Absorption correction: multi-scan(SADABS; Bruker, 2006) | |
| 12327 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| | |
| (Δ/σ)max < 0.001 | |
| 1998 reflections | Δρmax = 1.41 e Å−3 |
| 165 parameters | Δρmin = −0.64 e Å−3 |
| 2 restraints | Extinction correction: none |
| Primary atom site location: structure-invariant direct methods |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| C1 | 0.7990 (3) | 0.2409 (2) | 0.2636 (3) | 0.0304 (7) | |
| C2 | 0.9009 (3) | 0.1922 (2) | 0.2235 (3) | 0.0342 (7) | |
| H2 | 0.9097 | 0.1190 | 0.2323 | 0.041* | |
| C3 | 0.9897 (3) | 0.2493 (3) | 0.1712 (4) | 0.0382 (8) | |
| H3 | 1.048 (11) | 0.201 (8) | 0.147 (17) | 0.046* | 0.367 (7) |
| O3 | 1.0884 (4) | 0.2059 (4) | 0.1330 (6) | 0.0525 (14) | 0.633 (7) |
| H3A | 1.1301 | 0.2516 | 0.0999 | 0.079* | 0.633 (7) |
| C5 | 0.8761 (3) | 0.4051 (3) | 0.1995 (4) | 0.0394 (8) | |
| H5 | 0.862 (11) | 0.477 (2) | 0.177 (13) | 0.047* | 0.633 (7) |
| O5 | 0.8733 (10) | 0.5042 (5) | 0.1953 (12) | 0.045 (2) | 0.367 (7) |
| H5A | 0.8856 | 0.5248 | 0.1089 | 0.068* | 0.367 (7) |
| C4 | 0.9776 (3) | 0.3557 (3) | 0.1580 (4) | 0.0381 (8) | |
| O4 | 1.0659 (2) | 0.4115 (2) | 0.1053 (3) | 0.0503 (7) | |
| H4 | 1.0294 | 0.4656 | 0.0584 | 0.075* | |
| C6 | 0.7871 (3) | 0.3484 (2) | 0.2514 (3) | 0.0334 (7) | |
| H6 | 0.7178 | 0.3825 | 0.2787 | 0.040* | |
| C7 | 0.7094 (3) | 0.1775 (3) | 0.3225 (3) | 0.0357 (7) | |
| H7 | 0.7228 | 0.1047 | 0.3322 | 0.043* | |
| N1 | 0.6134 (2) | 0.2175 (2) | 0.3612 (3) | 0.0390 (7) | |
| N2 | 0.5403 (3) | 0.1489 (3) | 0.4216 (3) | 0.0442 (7) | |
| H2A | 0.5567 | 0.0819 | 0.4244 | 0.053* | |
| C8 | 0.4433 (3) | 0.1862 (3) | 0.4763 (4) | 0.0458 (9) | |
| S1 | 0.36442 (11) | 0.10262 (10) | 0.56744 (13) | 0.0685 (4) | |
| N3 | 0.4168 (3) | 0.2853 (3) | 0.4565 (3) | 0.0506 (8) | |
| H3B | 0.4660 | 0.3233 | 0.4133 | 0.061* | |
| C9 | 0.3112 (4) | 0.3371 (4) | 0.5010 (5) | 0.0678 (13) | |
| H9A | 0.3118 | 0.3133 | 0.6102 | 0.081* | |
| H9B | 0.2252 | 0.3177 | 0.4224 | 0.081* | |
| C10 | 0.3260 (5) | 0.4506 (5) | 0.5024 (6) | 0.0804 (15) | |
| H10A | 0.4042 | 0.4708 | 0.5917 | 0.121* | |
| H10B | 0.2476 | 0.4831 | 0.5179 | 0.121* | |
| H10C | 0.3361 | 0.4735 | 0.3987 | 0.121* |
| C1 | 0.0251 (14) | 0.0466 (18) | 0.0195 (14) | −0.0048 (12) | 0.0069 (11) | 0.0028 (12) |
| C2 | 0.0353 (16) | 0.0376 (17) | 0.0304 (15) | 0.0009 (13) | 0.0112 (13) | 0.0039 (13) |
| C3 | 0.0292 (16) | 0.057 (2) | 0.0319 (16) | 0.0021 (14) | 0.0146 (13) | 0.0001 (15) |
| O3 | 0.037 (3) | 0.075 (3) | 0.059 (3) | 0.009 (2) | 0.036 (2) | −0.002 (2) |
| C5 | 0.0427 (18) | 0.0392 (18) | 0.0365 (17) | −0.0057 (15) | 0.0122 (14) | 0.0051 (15) |
| O5 | 0.048 (4) | 0.035 (4) | 0.053 (5) | −0.010 (4) | 0.015 (3) | 0.013 (4) |
| C4 | 0.0331 (16) | 0.056 (2) | 0.0265 (15) | −0.0149 (15) | 0.0113 (13) | 0.0037 (14) |
| O4 | 0.0449 (14) | 0.0657 (17) | 0.0471 (14) | −0.0192 (12) | 0.0241 (12) | 0.0093 (12) |
| C6 | 0.0304 (15) | 0.0422 (17) | 0.0295 (16) | 0.0020 (13) | 0.0119 (13) | 0.0009 (13) |
| C7 | 0.0348 (16) | 0.0476 (19) | 0.0252 (15) | −0.0110 (14) | 0.0099 (13) | 0.0018 (13) |
| N1 | 0.0281 (13) | 0.0639 (18) | 0.0267 (13) | −0.0131 (12) | 0.0110 (11) | 0.0059 (12) |
| N2 | 0.0380 (14) | 0.0675 (19) | 0.0319 (14) | −0.0205 (14) | 0.0178 (12) | −0.0021 (13) |
| C8 | 0.0331 (17) | 0.082 (3) | 0.0250 (16) | −0.0237 (18) | 0.0133 (13) | −0.0102 (17) |
| S1 | 0.0738 (7) | 0.0931 (9) | 0.0585 (7) | −0.0513 (6) | 0.0497 (6) | −0.0299 (6) |
| N3 | 0.0305 (14) | 0.092 (3) | 0.0352 (15) | −0.0037 (15) | 0.0181 (12) | 0.0076 (16) |
| C9 | 0.038 (2) | 0.131 (4) | 0.039 (2) | 0.008 (2) | 0.0176 (16) | 0.000 (2) |
| C10 | 0.076 (3) | 0.122 (5) | 0.053 (3) | 0.036 (3) | 0.034 (2) | 0.000 (3) |
| C1—C2 | 1.388 (4) | C7—N1 | 1.278 (4) |
| C1—C6 | 1.395 (5) | C7—H7 | 0.9500 |
| C1—C7 | 1.462 (4) | N1—N2 | 1.384 (3) |
| C2—C3 | 1.380 (4) | N2—C8 | 1.350 (4) |
| C2—H2 | 0.9500 | N2—H2A | 0.8800 |
| C3—O3 | 1.319 (5) | C8—N3 | 1.310 (5) |
| C3—C4 | 1.380 (5) | C8—S1 | 1.702 (3) |
| C3—H3 | 0.950 (10) | S1—O4i | 3.301 (2) |
| O3—H3A | 0.8400 | N3—C9 | 1.457 (5) |
| C5—O5 | 1.279 (7) | N3—H3B | 0.8800 |
| C5—C6 | 1.376 (4) | C9—C10 | 1.473 (7) |
| C5—C4 | 1.394 (5) | C9—H9A | 0.9900 |
| C5—H5 | 0.950 (10) | C9—H9B | 0.9900 |
| O5—H5A | 0.8400 | C10—H10A | 0.9800 |
| C4—O4 | 1.369 (3) | C10—H10B | 0.9800 |
| O4—H4 | 0.8400 | C10—H10C | 0.9800 |
| C6—H6 | 0.9500 | ||
| C2—C1—C6 | 119.4 (3) | N1—C7—C1 | 121.7 (3) |
| C2—C1—C7 | 118.6 (3) | N1—C7—H7 | 119.1 |
| C6—C1—C7 | 121.9 (3) | C1—C7—H7 | 119.1 |
| C3—C2—C1 | 120.6 (3) | C7—N1—N2 | 115.4 (3) |
| C3—C2—H2 | 119.7 | C8—N2—N1 | 119.0 (3) |
| C1—C2—H2 | 119.7 | C8—N2—H2A | 120.5 |
| O3—C3—C4 | 117.6 (3) | N1—N2—H2A | 120.5 |
| O3—C3—C2 | 122.3 (4) | N3—C8—N2 | 117.4 (3) |
| C4—C3—C2 | 120.1 (3) | N3—C8—S1 | 124.2 (3) |
| C4—C3—H3 | 133 (8) | N2—C8—S1 | 118.4 (3) |
| C2—C3—H3 | 107 (8) | C8—N3—C9 | 124.5 (3) |
| C3—O3—H3A | 109.5 | C8—N3—H3B | 117.8 |
| O5—C5—C6 | 121.9 (5) | C9—N3—H3B | 117.8 |
| O5—C5—C4 | 117.6 (5) | N3—C9—C10 | 111.6 (4) |
| C6—C5—C4 | 120.5 (3) | N3—C9—H9A | 109.3 |
| C6—C5—H5 | 120 (7) | C10—C9—H9A | 109.3 |
| C4—C5—H5 | 119 (7) | N3—C9—H9B | 109.3 |
| C5—O5—H5A | 109.5 | C10—C9—H9B | 109.3 |
| O4—C4—C3 | 119.6 (3) | H9A—C9—H9B | 108.0 |
| O4—C4—C5 | 120.8 (3) | C9—C10—H10A | 109.5 |
| C3—C4—C5 | 119.6 (3) | C9—C10—H10B | 109.5 |
| C4—O4—H4 | 109.5 | H10A—C10—H10B | 109.5 |
| C5—C6—C1 | 119.9 (3) | C9—C10—H10C | 109.5 |
| C5—C6—H6 | 120.1 | H10A—C10—H10C | 109.5 |
| C1—C6—H6 | 120.1 | H10B—C10—H10C | 109.5 |
| H··· | ||||
| N3—H3B···N1 | 0.88 | 2.23 | 2.626 (4) | 107 |
| O5—H5A···S1ii | 0.84 | 2.82 | 3.106 (9) | 102 |
| C2—H2···O5iii | 0.95 | 2.65 | 3.335 (8) | 129 |
| N2—H2A···S1iv | 0.88 | 2.52 | 3.392 (4) | 172 |
| O4—H4···O4v | 0.84 | 2.16 | 2.988 (5) | 169 |
| C9—H9A···O3i | 0.99 | 2.46 | 2.985 (5) | 113 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3 | 0.88 | 2.23 | 2.626 (4) | 107 |
| O5—H5 | 0.84 | 2.82 | 3.106 (9) | 102 |
| C2—H2⋯O5ii | 0.95 | 2.65 | 3.335 (8) | 129 |
| N2—H2 | 0.88 | 2.52 | 3.392 (4) | 172 |
| O4—H4⋯O4iv | 0.84 | 2.16 | 2.988 (5) | 169 |
| C9—H9 | 0.99 | 2.46 | 2.985 (5) | 113 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .