Literature DB >> 21202314

(E)-3,4-Dihydroxy-benzaldehyde 4-ethyl-thio-semicarbazone.

Safa'a Fares Kayed, Yang Farina, Ibrahim Baba, Jim Simpson.   

Abstract

The title compound, C(10)H(13)N(3)O(2)S, was prepared by condensation of 3,4-dihydroxy-benzaldehyde with 4-ethyl-3-thio-semicarbazide. The mol-ecule adopts an E configuration with respect to the C=N bond. One of the OH substituents on the dihydroxy-benzene ring is disordered over the two possible 3-positions on either side of the ordered 4-hydr-oxy group. The occupancy of the major disorder component refined to 0.633 (7). The mol-ecule is essentially planar, with an r.m.s. deviation through all non-H atoms of 0.0862 Å. An intra-molecular N-H⋯N hydrogen bond forms between the outer amine residue and the imine N atom, generating an S(5) ring motif and contributing to the planarity of the mol-ecule. In the crystal structure, an extensive network of classical O-H⋯O, O-H⋯S and N-H⋯S hydrogen bonds and weak C-H⋯O and S⋯O [3.301 (3) Å] inter-actions link mol-ecules into sheets running approximately parallel to the ab plane.

Entities:  

Year:  2008        PMID: 21202314      PMCID: PMC2961087          DOI: 10.1107/S1600536808009148

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Swesi et al. (2006 ▶); Kovala-Demertzi et al. (2004 ▶); Jian & Li (2006 ▶). For reference structural data, see: Allen et al. (1987 ▶). For ring motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C10H13N3O2S M = 239.29 Monoclinic, a = 10.6549 (12) Å b = 12.9020 (16) Å c = 8.6375 (11) Å β = 107.910 (4)° V = 1129.9 (2) Å3 Z = 4 Mo Kα radiation μ = 0.28 mm−1 T = 91 (2) K 0.44 × 0.11 × 0.09 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2006 ▶) T min = 0.818, T max = 0.975 12327 measured reflections 1998 independent reflections 1507 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.168 S = 1.05 1998 reflections 165 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.41 e Å−3 Δρmin = −0.64 e Å−3 Data collection: APEX2 (Bruker 2006 ▶); cell refinement: APEX2 and SAINT (Bruker 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶) and TITAN2000 (Hunter & Simpson, 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) and TITAN2000; molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97, enCIFer (Allen et al., 2004 ▶) and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808009148/hg2389sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808009148/hg2389Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H13N3O2SF000 = 504
Mr = 239.29Dx = 1.407 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3071 reflections
a = 10.6549 (12) Åθ = 2.6–25.0º
b = 12.9020 (16) ŵ = 0.28 mm1
c = 8.6375 (11) ÅT = 91 (2) K
β = 107.910 (4)ºBlock, red
V = 1129.9 (2) Å30.44 × 0.11 × 0.09 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer1998 independent reflections
Radiation source: fine-focus sealed tube1507 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.040
T = 92(2) Kθmax = 25.1º
ω scansθmin = 3.1º
Absorption correction: multi-scan(SADABS; Bruker, 2006)h = −12→12
Tmin = 0.818, Tmax = 0.975k = −15→15
12327 measured reflectionsl = −10→8
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.059H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.168  w = 1/[σ2(Fo2) + (0.0718P)2 + 1.7231P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
1998 reflectionsΔρmax = 1.41 e Å3
165 parametersΔρmin = −0.64 e Å3
2 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.7990 (3)0.2409 (2)0.2636 (3)0.0304 (7)
C20.9009 (3)0.1922 (2)0.2235 (3)0.0342 (7)
H20.90970.11900.23230.041*
C30.9897 (3)0.2493 (3)0.1712 (4)0.0382 (8)
H31.048 (11)0.201 (8)0.147 (17)0.046*0.367 (7)
O31.0884 (4)0.2059 (4)0.1330 (6)0.0525 (14)0.633 (7)
H3A1.13010.25160.09990.079*0.633 (7)
C50.8761 (3)0.4051 (3)0.1995 (4)0.0394 (8)
H50.862 (11)0.477 (2)0.177 (13)0.047*0.633 (7)
O50.8733 (10)0.5042 (5)0.1953 (12)0.045 (2)0.367 (7)
H5A0.88560.52480.10890.068*0.367 (7)
C40.9776 (3)0.3557 (3)0.1580 (4)0.0381 (8)
O41.0659 (2)0.4115 (2)0.1053 (3)0.0503 (7)
H41.02940.46560.05840.075*
C60.7871 (3)0.3484 (2)0.2514 (3)0.0334 (7)
H60.71780.38250.27870.040*
C70.7094 (3)0.1775 (3)0.3225 (3)0.0357 (7)
H70.72280.10470.33220.043*
N10.6134 (2)0.2175 (2)0.3612 (3)0.0390 (7)
N20.5403 (3)0.1489 (3)0.4216 (3)0.0442 (7)
H2A0.55670.08190.42440.053*
C80.4433 (3)0.1862 (3)0.4763 (4)0.0458 (9)
S10.36442 (11)0.10262 (10)0.56744 (13)0.0685 (4)
N30.4168 (3)0.2853 (3)0.4565 (3)0.0506 (8)
H3B0.46600.32330.41330.061*
C90.3112 (4)0.3371 (4)0.5010 (5)0.0678 (13)
H9A0.31180.31330.61020.081*
H9B0.22520.31770.42240.081*
C100.3260 (5)0.4506 (5)0.5024 (6)0.0804 (15)
H10A0.40420.47080.59170.121*
H10B0.24760.48310.51790.121*
H10C0.33610.47350.39870.121*
U11U22U33U12U13U23
C10.0251 (14)0.0466 (18)0.0195 (14)−0.0048 (12)0.0069 (11)0.0028 (12)
C20.0353 (16)0.0376 (17)0.0304 (15)0.0009 (13)0.0112 (13)0.0039 (13)
C30.0292 (16)0.057 (2)0.0319 (16)0.0021 (14)0.0146 (13)0.0001 (15)
O30.037 (3)0.075 (3)0.059 (3)0.009 (2)0.036 (2)−0.002 (2)
C50.0427 (18)0.0392 (18)0.0365 (17)−0.0057 (15)0.0122 (14)0.0051 (15)
O50.048 (4)0.035 (4)0.053 (5)−0.010 (4)0.015 (3)0.013 (4)
C40.0331 (16)0.056 (2)0.0265 (15)−0.0149 (15)0.0113 (13)0.0037 (14)
O40.0449 (14)0.0657 (17)0.0471 (14)−0.0192 (12)0.0241 (12)0.0093 (12)
C60.0304 (15)0.0422 (17)0.0295 (16)0.0020 (13)0.0119 (13)0.0009 (13)
C70.0348 (16)0.0476 (19)0.0252 (15)−0.0110 (14)0.0099 (13)0.0018 (13)
N10.0281 (13)0.0639 (18)0.0267 (13)−0.0131 (12)0.0110 (11)0.0059 (12)
N20.0380 (14)0.0675 (19)0.0319 (14)−0.0205 (14)0.0178 (12)−0.0021 (13)
C80.0331 (17)0.082 (3)0.0250 (16)−0.0237 (18)0.0133 (13)−0.0102 (17)
S10.0738 (7)0.0931 (9)0.0585 (7)−0.0513 (6)0.0497 (6)−0.0299 (6)
N30.0305 (14)0.092 (3)0.0352 (15)−0.0037 (15)0.0181 (12)0.0076 (16)
C90.038 (2)0.131 (4)0.039 (2)0.008 (2)0.0176 (16)0.000 (2)
C100.076 (3)0.122 (5)0.053 (3)0.036 (3)0.034 (2)0.000 (3)
C1—C21.388 (4)C7—N11.278 (4)
C1—C61.395 (5)C7—H70.9500
C1—C71.462 (4)N1—N21.384 (3)
C2—C31.380 (4)N2—C81.350 (4)
C2—H20.9500N2—H2A0.8800
C3—O31.319 (5)C8—N31.310 (5)
C3—C41.380 (5)C8—S11.702 (3)
C3—H30.950 (10)S1—O4i3.301 (2)
O3—H3A0.8400N3—C91.457 (5)
C5—O51.279 (7)N3—H3B0.8800
C5—C61.376 (4)C9—C101.473 (7)
C5—C41.394 (5)C9—H9A0.9900
C5—H50.950 (10)C9—H9B0.9900
O5—H5A0.8400C10—H10A0.9800
C4—O41.369 (3)C10—H10B0.9800
O4—H40.8400C10—H10C0.9800
C6—H60.9500
C2—C1—C6119.4 (3)N1—C7—C1121.7 (3)
C2—C1—C7118.6 (3)N1—C7—H7119.1
C6—C1—C7121.9 (3)C1—C7—H7119.1
C3—C2—C1120.6 (3)C7—N1—N2115.4 (3)
C3—C2—H2119.7C8—N2—N1119.0 (3)
C1—C2—H2119.7C8—N2—H2A120.5
O3—C3—C4117.6 (3)N1—N2—H2A120.5
O3—C3—C2122.3 (4)N3—C8—N2117.4 (3)
C4—C3—C2120.1 (3)N3—C8—S1124.2 (3)
C4—C3—H3133 (8)N2—C8—S1118.4 (3)
C2—C3—H3107 (8)C8—N3—C9124.5 (3)
C3—O3—H3A109.5C8—N3—H3B117.8
O5—C5—C6121.9 (5)C9—N3—H3B117.8
O5—C5—C4117.6 (5)N3—C9—C10111.6 (4)
C6—C5—C4120.5 (3)N3—C9—H9A109.3
C6—C5—H5120 (7)C10—C9—H9A109.3
C4—C5—H5119 (7)N3—C9—H9B109.3
C5—O5—H5A109.5C10—C9—H9B109.3
O4—C4—C3119.6 (3)H9A—C9—H9B108.0
O4—C4—C5120.8 (3)C9—C10—H10A109.5
C3—C4—C5119.6 (3)C9—C10—H10B109.5
C4—O4—H4109.5H10A—C10—H10B109.5
C5—C6—C1119.9 (3)C9—C10—H10C109.5
C5—C6—H6120.1H10A—C10—H10C109.5
C1—C6—H6120.1H10B—C10—H10C109.5
D—H···AD—HH···AD···AD—H···A
N3—H3B···N10.882.232.626 (4)107
O5—H5A···S1ii0.842.823.106 (9)102
C2—H2···O5iii0.952.653.335 (8)129
N2—H2A···S1iv0.882.523.392 (4)172
O4—H4···O4v0.842.162.988 (5)169
C9—H9A···O3i0.992.462.985 (5)113
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3B⋯N10.882.232.626 (4)107
O5—H5A⋯S1i0.842.823.106 (9)102
C2—H2⋯O5ii0.952.653.335 (8)129
N2—H2A⋯S1iii0.882.523.392 (4)172
O4—H4⋯O4iv0.842.162.988 (5)169
C9—H9A⋯O3v0.992.462.985 (5)113

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  6 in total

1.  (E)-3,4-Dihydroxy-benzaldehyde 4-methyl-thio-semicarbazone.

Authors:  Yang Farina; Jim Simpson
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-25

2.  2,5-Dihydroxy-benzaldehyde 4-methyl-thio-semicarbazone.

Authors:  Kong Wai Tan; Chew Hee Ng; Mohd Jamil Maah; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-28

3.  2,4-Dihydroxy-benzaldehyde 4-ethyl-thio-semicarbazone.

Authors:  Kong Wai Tan; Chew Hee Ng; Mohd Jamil Maah; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-18

4.  1-(2,3,4-Trihydroxy-benzyl-idene)-4-ethyl-thio-semicarbazide.

Authors:  Hana Bashir Shawish; M Jamil Maah; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-24

5.  4-(Dimethyl-amino)benzaldehyde 4-ethyl-thio-semicarbazone.

Authors:  Abdussalam Salhin; Norfarhah Abdul Razak; I A Rahman
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-13

6.  3-[(E)-(4-Chloro-benzyl-idene)amino]-1-phenyl-thio-urea.

Authors:  Nur Nadia Dzulkifli; Yang Farina; Bohari M Yamin; Ibrahim Baba; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-12
  6 in total

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