Literature DB >> 21579198

1-(2,3,4-Trihydroxy-benzyl-idene)-4-ethyl-thio-semicarbazide.

Hana Bashir Shawish1, M Jamil Maah, Seik Weng Ng.   

Abstract

In the title mol-ecule, C(10)H(13)N(3)O(3)S, the thio-semicarbazide =N-NH-C(=S)-NH- fragment is twisted with respect to the aromatic ring [dihedral angle = 20.5 (1)°]. A weak N-H⋯S hydrogen bond [3.480 (1) Å] links two mol-ecules about a center of inversion to generate a ring. The hydr-oxy groups are engaged in inter-molecular hydrogen bonding; the O-H⋯O and O-H⋯S hydrogen bonds generate a layer motif.

Entities:  

Year:  2010        PMID: 21579198      PMCID: PMC2979131          DOI: 10.1107/S1600536810014078

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of 3,4-dihydroxy­benzaldehyde 4-ethyl­thio­semicarbazone and 2,4-dihydroxy­benzaldehyde 4-ethyl­thio­semicarbazone, see: Kayed et al. (2008 ▶); Tan et al. (2008 ▶).

Experimental

Crystal data

C10H13N3O3S M = 255.29 Monoclinic, a = 7.5668 (5) Å b = 14.6754 (10) Å c = 10.8700 (7) Å β = 104.711 (1)° V = 1167.50 (13) Å3 Z = 4 Mo Kα radiation μ = 0.28 mm−1 T = 100 K 0.30 × 0.20 × 0.10 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.921, T max = 0.973 10870 measured reflections 2660 independent reflections 2364 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.082 S = 1.04 2660 reflections 174 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 software (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810014078/pk2241sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810014078/pk2241Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H13N3O3SF(000) = 536
Mr = 255.29Dx = 1.452 Mg m−3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5730 reflections
a = 7.5668 (5) Åθ = 2.4–28.3°
b = 14.6754 (10) ŵ = 0.28 mm−1
c = 10.8700 (7) ÅT = 100 K
β = 104.711 (1)°Prism, colorless
V = 1167.50 (13) Å30.30 × 0.20 × 0.10 mm
Z = 4
Bruker SMART APEX diffractometer2660 independent reflections
Radiation source: fine-focus sealed tube2364 reflections with I > 2σ(I)
graphiteRint = 0.026
ω scansθmax = 27.5°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −9→9
Tmin = 0.921, Tmax = 0.973k = −19→19
10870 measured reflectionsl = −14→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.082H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0437P)2 + 0.4981P] where P = (Fo2 + 2Fc2)/3
2660 reflections(Δ/σ)max = 0.001
174 parametersΔρmax = 0.34 e Å−3
5 restraintsΔρmin = −0.21 e Å−3
xyzUiso*/Ueq
S10.70929 (4)0.59538 (2)0.58991 (3)0.01292 (10)
O10.50792 (13)0.28115 (6)0.03429 (8)0.0153 (2)
O20.54351 (14)0.26317 (6)−0.20701 (9)0.0176 (2)
O30.73079 (14)0.39064 (6)−0.30899 (9)0.0167 (2)
N10.73526 (15)0.49383 (7)0.26113 (10)0.0133 (2)
N20.69204 (15)0.50533 (7)0.37631 (10)0.0132 (2)
N30.91494 (16)0.61386 (8)0.42338 (11)0.0150 (2)
C10.66760 (17)0.42305 (8)0.05845 (12)0.0114 (2)
C20.59670 (17)0.34728 (8)−0.01603 (12)0.0114 (2)
C30.61719 (17)0.33861 (8)−0.13940 (12)0.0122 (2)
C40.71179 (18)0.40505 (8)−0.18813 (12)0.0123 (2)
C50.78291 (17)0.48082 (9)−0.11516 (12)0.0134 (3)
H50.84740.5261−0.14860.016*
C60.75918 (17)0.48975 (8)0.00612 (12)0.0127 (2)
H60.80590.54210.05500.015*
C70.64158 (17)0.43394 (8)0.18633 (12)0.0124 (2)
H70.55590.39690.21380.015*
C80.77826 (17)0.57177 (8)0.45530 (12)0.0118 (2)
C91.01416 (19)0.69298 (9)0.48851 (13)0.0168 (3)
H9A1.14560.68690.49170.020*
H9B1.00200.69510.57700.020*
C100.9416 (2)0.78045 (10)0.42107 (17)0.0283 (4)
H10A1.00800.83230.46780.042*
H10B0.81120.78630.41710.042*
H10C0.95840.77950.33460.042*
H1O0.472 (3)0.2409 (11)−0.0195 (16)0.039 (6)*
H2O0.554 (3)0.2673 (15)−0.2817 (11)0.045 (6)*
H3O0.731 (3)0.4420 (9)−0.343 (2)0.047 (6)*
H2N0.5992 (17)0.4785 (11)0.3933 (15)0.021 (4)*
H3N0.936 (2)0.5975 (11)0.3531 (11)0.023 (4)*
U11U22U33U12U13U23
S10.01775 (18)0.01251 (16)0.00958 (16)−0.00113 (11)0.00547 (12)−0.00111 (10)
O10.0228 (5)0.0130 (4)0.0113 (4)−0.0065 (4)0.0064 (4)−0.0022 (3)
O20.0281 (5)0.0147 (5)0.0114 (5)−0.0064 (4)0.0078 (4)−0.0041 (4)
O30.0259 (5)0.0153 (5)0.0110 (5)0.0000 (4)0.0089 (4)0.0007 (3)
N10.0157 (5)0.0150 (5)0.0104 (5)−0.0001 (4)0.0056 (4)−0.0018 (4)
N20.0155 (5)0.0149 (5)0.0109 (5)−0.0040 (4)0.0063 (4)−0.0028 (4)
N30.0185 (6)0.0158 (5)0.0126 (5)−0.0046 (4)0.0075 (4)−0.0047 (4)
C10.0116 (6)0.0122 (5)0.0103 (6)0.0016 (4)0.0024 (4)0.0003 (4)
C20.0118 (6)0.0105 (5)0.0124 (6)0.0007 (4)0.0038 (5)0.0015 (4)
C30.0144 (6)0.0109 (6)0.0109 (6)0.0011 (5)0.0023 (5)−0.0012 (4)
C40.0137 (6)0.0144 (6)0.0096 (6)0.0034 (5)0.0042 (5)0.0009 (4)
C50.0132 (6)0.0129 (6)0.0144 (6)−0.0004 (5)0.0040 (5)0.0027 (5)
C60.0127 (6)0.0118 (6)0.0126 (6)−0.0003 (5)0.0016 (5)−0.0010 (5)
C70.0138 (6)0.0111 (6)0.0128 (6)0.0005 (5)0.0042 (5)0.0002 (4)
C80.0140 (6)0.0104 (5)0.0110 (6)0.0015 (5)0.0028 (5)0.0011 (4)
C90.0182 (7)0.0164 (6)0.0167 (6)−0.0067 (5)0.0060 (5)−0.0043 (5)
C100.0201 (8)0.0167 (7)0.0444 (10)−0.0032 (6)0.0012 (7)0.0005 (6)
S1—C81.7092 (13)C1—C61.4007 (17)
O1—C21.3707 (15)C1—C71.4613 (17)
O1—H1O0.827 (9)C2—C31.3944 (17)
O2—C31.3669 (15)C3—C41.3914 (17)
O2—H2O0.838 (9)C4—C51.3923 (17)
O3—C41.3738 (15)C5—C61.3811 (17)
O3—H3O0.841 (9)C5—H50.9500
N1—C71.2819 (16)C6—H60.9500
N1—N21.3824 (14)C7—H70.9500
N2—C81.3523 (16)C9—C101.511 (2)
N2—H2N0.866 (9)C9—H9A0.9900
N3—C81.3244 (17)C9—H9B0.9900
N3—C91.4639 (16)C10—H10A0.9800
N3—H3N0.853 (9)C10—H10B0.9800
C1—C21.3996 (17)C10—H10C0.9800
C2—O1—H1O109.3 (15)C6—C5—H5120.2
C3—O2—H2O109.6 (15)C4—C5—H5120.2
C4—O3—H3O107.5 (15)C5—C6—C1121.26 (11)
C7—N1—N2115.99 (11)C5—C6—H6119.4
C8—N2—N1118.43 (11)C1—C6—H6119.4
C8—N2—H2N118.7 (11)N1—C7—C1119.47 (11)
N1—N2—H2N122.0 (11)N1—C7—H7120.3
C8—N3—C9125.59 (11)C1—C7—H7120.3
C8—N3—H3N116.0 (12)N3—C8—N2116.93 (11)
C9—N3—H3N117.8 (12)N3—C8—S1123.94 (10)
C2—C1—C6118.47 (11)N2—C8—S1119.13 (10)
C2—C1—C7120.84 (11)N3—C9—C10111.14 (11)
C6—C1—C7120.66 (11)N3—C9—H9A109.4
O1—C2—C3120.30 (11)C10—C9—H9A109.4
O1—C2—C1119.11 (11)N3—C9—H9B109.4
C3—C2—C1120.59 (11)C10—C9—H9B109.4
O2—C3—C4122.81 (11)H9A—C9—H9B108.0
O2—C3—C2117.46 (11)C9—C10—H10A109.5
C4—C3—C2119.72 (11)C9—C10—H10B109.5
O3—C4—C3116.43 (11)H10A—C10—H10B109.5
O3—C4—C5123.27 (11)C9—C10—H10C109.5
C3—C4—C5120.30 (12)H10A—C10—H10C109.5
C6—C5—C4119.63 (12)H10B—C10—H10C109.5
C7—N1—N2—C8−175.71 (11)O3—C4—C5—C6−179.39 (12)
C6—C1—C2—O1179.53 (11)C3—C4—C5—C60.03 (19)
C7—C1—C2—O1−2.47 (18)C4—C5—C6—C11.21 (19)
C6—C1—C2—C30.05 (18)C2—C1—C6—C5−1.25 (19)
C7—C1—C2—C3178.06 (11)C7—C1—C6—C5−179.26 (12)
O1—C2—C3—O20.95 (18)N2—N1—C7—C1174.75 (11)
C1—C2—C3—O2−179.58 (11)C2—C1—C7—N1167.00 (12)
O1—C2—C3—C4−178.31 (11)C6—C1—C7—N1−15.04 (18)
C1—C2—C3—C41.16 (19)C9—N3—C8—N2173.77 (12)
O2—C3—C4—O3−0.96 (18)C9—N3—C8—S1−7.36 (19)
C2—C3—C4—O3178.26 (11)N1—N2—C8—N3−8.18 (17)
O2—C3—C4—C5179.58 (12)N1—N2—C8—S1172.89 (9)
C2—C3—C4—C5−1.20 (19)C8—N3—C9—C10−97.70 (16)
D—H···AD—HH···AD···AD—H···A
O1—H1o···O20.83 (1)2.26 (2)2.717 (1)115 (2)
O1—H1o···S1i0.83 (1)2.55 (1)3.291 (1)150 (2)
O2—H2o···O30.84 (1)2.31 (2)2.745 (1)112 (2)
O2—H2o···O1ii0.84 (1)2.07 (1)2.832 (1)151 (2)
O3—H3o···S1iii0.84 (1)2.36 (1)3.189 (1)170 (2)
N2—H2N···S1iv0.872.623.480 (1)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯AD⋯AD—H⋯A
O1—H1O⋯O20.83 (1)2.26 (2)2.717 (1)115 (2)
O1—H1O⋯S1i0.83 (1)2.55 (1)3.291 (1)150 (2)
O2—H2O⋯O30.84 (1)2.31 (2)2.745 (1)112 (2)
O2—H2O⋯O1ii0.84 (1)2.07 (1)2.832 (1)151 (2)
O3—H3O⋯S1iii0.84 (1)2.36 (1)3.189 (1)170 (2)
N2—H2N⋯S1iv0.872.623.480 (1)171

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2,4-Dihydroxy-benzaldehyde 4-ethyl-thio-semicarbazone.

Authors:  Kong Wai Tan; Chew Hee Ng; Mohd Jamil Maah; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-18

3.  (E)-3,4-Dihydroxy-benzaldehyde 4-ethyl-thio-semicarbazone.

Authors:  Safa'a Fares Kayed; Yang Farina; Ibrahim Baba; Jim Simpson
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-04-10
  3 in total
  1 in total

1.  (E)-1-(2,4,6-Trihy-droxy-benzyl-idene)-4-ethyl-thio-semicarbazide dihydrate.

Authors:  Hana Bashir Shawish; Kong Wai Tan; M Jamil Maah; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-11
  1 in total

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