| Literature DB >> 21579198 |
Hana Bashir Shawish1, M Jamil Maah, Seik Weng Ng.
Abstract
In the title mol-ecule, C(10)H(13)N(3)O(3)S, the thio-semicarbazide =N-NH-C(=S)-NH- fragment is twisted with respect to the aromatic ring [dihedral angle = 20.5 (1)°]. A weak N-H⋯S hydrogen bond [3.480 (1) Å] links two mol-ecules about a center of inversion to generate a ring. The hydr-oxy groups are engaged in inter-molecular hydrogen bonding; the O-H⋯O and O-H⋯S hydrogen bonds generate a layer motif.Entities:
Year: 2010 PMID: 21579198 PMCID: PMC2979131 DOI: 10.1107/S1600536810014078
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H13N3O3S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 5730 reflections |
| θ = 2.4–28.3° | |
| µ = 0.28 mm−1 | |
| β = 104.711 (1)° | Prism, colorless |
| 0.30 × 0.20 × 0.10 mm | |
| Bruker SMART APEX diffractometer | 2660 independent reflections |
| Radiation source: fine-focus sealed tube | 2364 reflections with |
| graphite | |
| ω scans | θmax = 27.5°, θmin = 2.4° |
| Absorption correction: multi-scan ( | |
| 10870 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2660 reflections | (Δ/σ)max = 0.001 |
| 174 parameters | Δρmax = 0.34 e Å−3 |
| 5 restraints | Δρmin = −0.21 e Å−3 |
| S1 | 0.70929 (4) | 0.59538 (2) | 0.58991 (3) | 0.01292 (10) | |
| O1 | 0.50792 (13) | 0.28115 (6) | 0.03429 (8) | 0.0153 (2) | |
| O2 | 0.54351 (14) | 0.26317 (6) | −0.20701 (9) | 0.0176 (2) | |
| O3 | 0.73079 (14) | 0.39064 (6) | −0.30899 (9) | 0.0167 (2) | |
| N1 | 0.73526 (15) | 0.49383 (7) | 0.26113 (10) | 0.0133 (2) | |
| N2 | 0.69204 (15) | 0.50533 (7) | 0.37631 (10) | 0.0132 (2) | |
| N3 | 0.91494 (16) | 0.61386 (8) | 0.42338 (11) | 0.0150 (2) | |
| C1 | 0.66760 (17) | 0.42305 (8) | 0.05845 (12) | 0.0114 (2) | |
| C2 | 0.59670 (17) | 0.34728 (8) | −0.01603 (12) | 0.0114 (2) | |
| C3 | 0.61719 (17) | 0.33861 (8) | −0.13940 (12) | 0.0122 (2) | |
| C4 | 0.71179 (18) | 0.40505 (8) | −0.18813 (12) | 0.0123 (2) | |
| C5 | 0.78291 (17) | 0.48082 (9) | −0.11516 (12) | 0.0134 (3) | |
| H5 | 0.8474 | 0.5261 | −0.1486 | 0.016* | |
| C6 | 0.75918 (17) | 0.48975 (8) | 0.00612 (12) | 0.0127 (2) | |
| H6 | 0.8059 | 0.5421 | 0.0550 | 0.015* | |
| C7 | 0.64158 (17) | 0.43394 (8) | 0.18633 (12) | 0.0124 (2) | |
| H7 | 0.5559 | 0.3969 | 0.2138 | 0.015* | |
| C8 | 0.77826 (17) | 0.57177 (8) | 0.45530 (12) | 0.0118 (2) | |
| C9 | 1.01416 (19) | 0.69298 (9) | 0.48851 (13) | 0.0168 (3) | |
| H9A | 1.1456 | 0.6869 | 0.4917 | 0.020* | |
| H9B | 1.0020 | 0.6951 | 0.5770 | 0.020* | |
| C10 | 0.9416 (2) | 0.78045 (10) | 0.42107 (17) | 0.0283 (4) | |
| H10A | 1.0080 | 0.8323 | 0.4678 | 0.042* | |
| H10B | 0.8112 | 0.7863 | 0.4171 | 0.042* | |
| H10C | 0.9584 | 0.7795 | 0.3346 | 0.042* | |
| H1O | 0.472 (3) | 0.2409 (11) | −0.0195 (16) | 0.039 (6)* | |
| H2O | 0.554 (3) | 0.2673 (15) | −0.2817 (11) | 0.045 (6)* | |
| H3O | 0.731 (3) | 0.4420 (9) | −0.343 (2) | 0.047 (6)* | |
| H2N | 0.5992 (17) | 0.4785 (11) | 0.3933 (15) | 0.021 (4)* | |
| H3N | 0.936 (2) | 0.5975 (11) | 0.3531 (11) | 0.023 (4)* |
| S1 | 0.01775 (18) | 0.01251 (16) | 0.00958 (16) | −0.00113 (11) | 0.00547 (12) | −0.00111 (10) |
| O1 | 0.0228 (5) | 0.0130 (4) | 0.0113 (4) | −0.0065 (4) | 0.0064 (4) | −0.0022 (3) |
| O2 | 0.0281 (5) | 0.0147 (5) | 0.0114 (5) | −0.0064 (4) | 0.0078 (4) | −0.0041 (4) |
| O3 | 0.0259 (5) | 0.0153 (5) | 0.0110 (5) | 0.0000 (4) | 0.0089 (4) | 0.0007 (3) |
| N1 | 0.0157 (5) | 0.0150 (5) | 0.0104 (5) | −0.0001 (4) | 0.0056 (4) | −0.0018 (4) |
| N2 | 0.0155 (5) | 0.0149 (5) | 0.0109 (5) | −0.0040 (4) | 0.0063 (4) | −0.0028 (4) |
| N3 | 0.0185 (6) | 0.0158 (5) | 0.0126 (5) | −0.0046 (4) | 0.0075 (4) | −0.0047 (4) |
| C1 | 0.0116 (6) | 0.0122 (5) | 0.0103 (6) | 0.0016 (4) | 0.0024 (4) | 0.0003 (4) |
| C2 | 0.0118 (6) | 0.0105 (5) | 0.0124 (6) | 0.0007 (4) | 0.0038 (5) | 0.0015 (4) |
| C3 | 0.0144 (6) | 0.0109 (6) | 0.0109 (6) | 0.0011 (5) | 0.0023 (5) | −0.0012 (4) |
| C4 | 0.0137 (6) | 0.0144 (6) | 0.0096 (6) | 0.0034 (5) | 0.0042 (5) | 0.0009 (4) |
| C5 | 0.0132 (6) | 0.0129 (6) | 0.0144 (6) | −0.0004 (5) | 0.0040 (5) | 0.0027 (5) |
| C6 | 0.0127 (6) | 0.0118 (6) | 0.0126 (6) | −0.0003 (5) | 0.0016 (5) | −0.0010 (5) |
| C7 | 0.0138 (6) | 0.0111 (6) | 0.0128 (6) | 0.0005 (5) | 0.0042 (5) | 0.0002 (4) |
| C8 | 0.0140 (6) | 0.0104 (5) | 0.0110 (6) | 0.0015 (5) | 0.0028 (5) | 0.0011 (4) |
| C9 | 0.0182 (7) | 0.0164 (6) | 0.0167 (6) | −0.0067 (5) | 0.0060 (5) | −0.0043 (5) |
| C10 | 0.0201 (8) | 0.0167 (7) | 0.0444 (10) | −0.0032 (6) | 0.0012 (7) | 0.0005 (6) |
| S1—C8 | 1.7092 (13) | C1—C6 | 1.4007 (17) |
| O1—C2 | 1.3707 (15) | C1—C7 | 1.4613 (17) |
| O1—H1O | 0.827 (9) | C2—C3 | 1.3944 (17) |
| O2—C3 | 1.3669 (15) | C3—C4 | 1.3914 (17) |
| O2—H2O | 0.838 (9) | C4—C5 | 1.3923 (17) |
| O3—C4 | 1.3738 (15) | C5—C6 | 1.3811 (17) |
| O3—H3O | 0.841 (9) | C5—H5 | 0.9500 |
| N1—C7 | 1.2819 (16) | C6—H6 | 0.9500 |
| N1—N2 | 1.3824 (14) | C7—H7 | 0.9500 |
| N2—C8 | 1.3523 (16) | C9—C10 | 1.511 (2) |
| N2—H2N | 0.866 (9) | C9—H9A | 0.9900 |
| N3—C8 | 1.3244 (17) | C9—H9B | 0.9900 |
| N3—C9 | 1.4639 (16) | C10—H10A | 0.9800 |
| N3—H3N | 0.853 (9) | C10—H10B | 0.9800 |
| C1—C2 | 1.3996 (17) | C10—H10C | 0.9800 |
| C2—O1—H1O | 109.3 (15) | C6—C5—H5 | 120.2 |
| C3—O2—H2O | 109.6 (15) | C4—C5—H5 | 120.2 |
| C4—O3—H3O | 107.5 (15) | C5—C6—C1 | 121.26 (11) |
| C7—N1—N2 | 115.99 (11) | C5—C6—H6 | 119.4 |
| C8—N2—N1 | 118.43 (11) | C1—C6—H6 | 119.4 |
| C8—N2—H2N | 118.7 (11) | N1—C7—C1 | 119.47 (11) |
| N1—N2—H2N | 122.0 (11) | N1—C7—H7 | 120.3 |
| C8—N3—C9 | 125.59 (11) | C1—C7—H7 | 120.3 |
| C8—N3—H3N | 116.0 (12) | N3—C8—N2 | 116.93 (11) |
| C9—N3—H3N | 117.8 (12) | N3—C8—S1 | 123.94 (10) |
| C2—C1—C6 | 118.47 (11) | N2—C8—S1 | 119.13 (10) |
| C2—C1—C7 | 120.84 (11) | N3—C9—C10 | 111.14 (11) |
| C6—C1—C7 | 120.66 (11) | N3—C9—H9A | 109.4 |
| O1—C2—C3 | 120.30 (11) | C10—C9—H9A | 109.4 |
| O1—C2—C1 | 119.11 (11) | N3—C9—H9B | 109.4 |
| C3—C2—C1 | 120.59 (11) | C10—C9—H9B | 109.4 |
| O2—C3—C4 | 122.81 (11) | H9A—C9—H9B | 108.0 |
| O2—C3—C2 | 117.46 (11) | C9—C10—H10A | 109.5 |
| C4—C3—C2 | 119.72 (11) | C9—C10—H10B | 109.5 |
| O3—C4—C3 | 116.43 (11) | H10A—C10—H10B | 109.5 |
| O3—C4—C5 | 123.27 (11) | C9—C10—H10C | 109.5 |
| C3—C4—C5 | 120.30 (12) | H10A—C10—H10C | 109.5 |
| C6—C5—C4 | 119.63 (12) | H10B—C10—H10C | 109.5 |
| C7—N1—N2—C8 | −175.71 (11) | O3—C4—C5—C6 | −179.39 (12) |
| C6—C1—C2—O1 | 179.53 (11) | C3—C4—C5—C6 | 0.03 (19) |
| C7—C1—C2—O1 | −2.47 (18) | C4—C5—C6—C1 | 1.21 (19) |
| C6—C1—C2—C3 | 0.05 (18) | C2—C1—C6—C5 | −1.25 (19) |
| C7—C1—C2—C3 | 178.06 (11) | C7—C1—C6—C5 | −179.26 (12) |
| O1—C2—C3—O2 | 0.95 (18) | N2—N1—C7—C1 | 174.75 (11) |
| C1—C2—C3—O2 | −179.58 (11) | C2—C1—C7—N1 | 167.00 (12) |
| O1—C2—C3—C4 | −178.31 (11) | C6—C1—C7—N1 | −15.04 (18) |
| C1—C2—C3—C4 | 1.16 (19) | C9—N3—C8—N2 | 173.77 (12) |
| O2—C3—C4—O3 | −0.96 (18) | C9—N3—C8—S1 | −7.36 (19) |
| C2—C3—C4—O3 | 178.26 (11) | N1—N2—C8—N3 | −8.18 (17) |
| O2—C3—C4—C5 | 179.58 (12) | N1—N2—C8—S1 | 172.89 (9) |
| C2—C3—C4—C5 | −1.20 (19) | C8—N3—C9—C10 | −97.70 (16) |
| H··· | ||||
| O1—H1o···O2 | 0.83 (1) | 2.26 (2) | 2.717 (1) | 115 (2) |
| O1—H1o···S1i | 0.83 (1) | 2.55 (1) | 3.291 (1) | 150 (2) |
| O2—H2o···O3 | 0.84 (1) | 2.31 (2) | 2.745 (1) | 112 (2) |
| O2—H2o···O1ii | 0.84 (1) | 2.07 (1) | 2.832 (1) | 151 (2) |
| O3—H3o···S1iii | 0.84 (1) | 2.36 (1) | 3.189 (1) | 170 (2) |
| N2—H2N···S1iv | 0.87 | 2.62 | 3.480 (1) | 171 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1 | 0.83 (1) | 2.26 (2) | 2.717 (1) | 115 (2) |
| O1—H1 | 0.83 (1) | 2.55 (1) | 3.291 (1) | 150 (2) |
| O2—H2 | 0.84 (1) | 2.31 (2) | 2.745 (1) | 112 (2) |
| O2—H2 | 0.84 (1) | 2.07 (1) | 2.832 (1) | 151 (2) |
| O3—H3 | 0.84 (1) | 2.36 (1) | 3.189 (1) | 170 (2) |
| N2—H2 | 0.87 | 2.62 | 3.480 (1) | 171 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .