Literature DB >> 21202966

2,5-Dihydroxy-benzaldehyde 4-methyl-thio-semicarbazone.

Kong Wai Tan, Chew Hee Ng, Mohd Jamil Maah, Seik Weng Ng.   

Abstract

The planar mol-ecules of the title compound, C(9)H(11)N(3)O(2)S, are linked into a supra-molecualr chain via O-H⋯S hydrogen bonds. These chains are connected into a two-dimensional array via N-H⋯O hydrogen bonds; an intra-molecular O-H⋯N hydrogen bond is also present.

Entities:  

Year:  2008        PMID: 21202966      PMCID: PMC2961871          DOI: 10.1107/S1600536808018801

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the medicinal activity of 2,5-dihydroxy­benzaldehyde thio­semicarbazone, see: Libermann et al. (1953 ▶); Taniyama & Tanaka (1965 ▶); Xue et al. (2007 ▶). For the structure of 2-hydroxy­benzaldehyde 4-methyl­thio­semicarbazone, see: Vrdoljak et al. (2005 ▶). For the structure of 3,4-dihydroxy­benzaldehyde 4-ethyl­thio­semicarbazone, see: Kayed et al. (2008 ▶).

Experimental

Crystal data

C9H11N3O2S M = 225.27 Triclinic, a = 5.9932 (4) Å b = 8.5207 (6) Å c = 10.3272 (6) Å α = 78.552 (4)° β = 74.181 (4)° γ = 81.743 (4)° V = 495.06 (6) Å3 Z = 2 Mo Kα radiation μ = 0.31 mm−1 T = 100 (2) K 0.24 × 0.16 × 0.02 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.929, T max = 0.994 4189 measured reflections 2258 independent reflections 1580 reflections with I > 2σ(I) R int = 0.050

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.123 S = 1.03 2258 reflections 153 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.32 e Å−3 Δρmin = −0.47 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808018801/tk2278sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808018801/tk2278Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H11N3O2SZ = 2
Mr = 225.27F000 = 236
Triclinic, P1Dx = 1.511 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 5.9932 (4) ÅCell parameters from 558 reflections
b = 8.5207 (6) Åθ = 2.9–23.0º
c = 10.3272 (6) ŵ = 0.31 mm1
α = 78.552 (4)ºT = 100 (2) K
β = 74.181 (4)ºPlate, yellow
γ = 81.743 (4)º0.24 × 0.16 × 0.02 mm
V = 495.06 (6) Å3
Bruker SMART APEX diffractometer2258 independent reflections
Radiation source: fine-focus sealed tube1580 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.050
T = 100(2) Kθmax = 27.5º
ω scansθmin = 2.5º
Absorption correction: Multi-scan(SADABS; Sheldrick, 1996)h = −7→7
Tmin = 0.929, Tmax = 0.994k = −11→8
4189 measured reflectionsl = −13→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.054H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.123  w = 1/[σ2(Fo2) + (0.0471P)2] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
2258 reflectionsΔρmax = 0.32 e Å3
153 parametersΔρmin = −0.47 e Å3
4 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
xyzUiso*/Ueq
S10.44298 (12)0.47335 (9)0.72966 (7)0.0189 (2)
O11.3132 (3)0.8655 (2)0.47568 (18)0.0188 (4)
O21.2446 (3)1.1893 (2)−0.03406 (18)0.0200 (5)
N10.8637 (4)0.5405 (3)0.7312 (2)0.0147 (5)
N20.7415 (4)0.6387 (3)0.5359 (2)0.0159 (5)
N30.9289 (4)0.7298 (3)0.4833 (2)0.0145 (5)
C10.8391 (5)0.4576 (3)0.8709 (2)0.0188 (6)
H1A0.98020.46330.89960.028*
H1B0.81600.34470.87630.028*
H1C0.70440.50880.93100.028*
C20.7001 (4)0.5552 (3)0.6642 (2)0.0134 (6)
C30.9368 (4)0.8121 (3)0.3637 (2)0.0136 (6)
H30.82130.80180.31940.016*
C41.1147 (4)0.9200 (3)0.2937 (2)0.0133 (6)
C51.2915 (4)0.9450 (3)0.3503 (2)0.0140 (6)
C61.4505 (5)1.0551 (3)0.2796 (2)0.0157 (6)
H61.56731.07450.31930.019*
C71.4389 (5)1.1372 (3)0.1504 (3)0.0153 (6)
H71.54961.21110.10160.018*
C81.2669 (4)1.1117 (3)0.0929 (2)0.0149 (6)
C91.1055 (4)1.0049 (3)0.1638 (2)0.0146 (6)
H90.98660.98870.12430.018*
H1o1.206 (4)0.805 (3)0.511 (3)0.048 (12)*
H2o1.352 (5)1.245 (4)−0.082 (3)0.059 (13)*
H1n0.988 (3)0.581 (4)0.689 (3)0.032 (9)*
H2n0.640 (4)0.656 (4)0.491 (3)0.042 (10)*
U11U22U33U12U13U23
S10.0149 (4)0.0241 (4)0.0175 (3)−0.0083 (3)−0.0051 (3)0.0033 (3)
O10.0222 (11)0.0221 (12)0.0140 (9)−0.0081 (9)−0.0089 (8)0.0025 (8)
O20.0244 (11)0.0202 (12)0.0149 (9)−0.0088 (9)−0.0059 (8)0.0047 (8)
N10.0114 (12)0.0181 (13)0.0148 (11)−0.0035 (10)−0.0038 (9)−0.0007 (9)
N20.0153 (12)0.0168 (13)0.0158 (11)−0.0060 (10)−0.0056 (9)0.0024 (9)
N30.0121 (11)0.0136 (12)0.0175 (11)−0.0050 (9)−0.0013 (9)−0.0023 (9)
C10.0198 (15)0.0231 (16)0.0128 (12)−0.0048 (12)−0.0051 (11)0.0015 (11)
C20.0137 (13)0.0106 (14)0.0155 (12)−0.0011 (11)−0.0032 (10)−0.0022 (11)
C30.0136 (13)0.0138 (14)0.0147 (12)−0.0019 (11)−0.0053 (10)−0.0025 (11)
C40.0134 (13)0.0118 (14)0.0153 (12)−0.0008 (10)−0.0034 (10)−0.0038 (11)
C50.0137 (13)0.0154 (15)0.0133 (12)0.0001 (11)−0.0041 (10)−0.0034 (11)
C60.0139 (13)0.0162 (15)0.0193 (13)−0.0029 (11)−0.0070 (10)−0.0039 (11)
C70.0163 (14)0.0102 (14)0.0178 (13)−0.0021 (11)−0.0024 (10)−0.0006 (11)
C80.0160 (14)0.0144 (15)0.0143 (12)0.0006 (11)−0.0050 (10)−0.0023 (11)
C90.0158 (14)0.0156 (15)0.0140 (12)−0.0021 (11)−0.0059 (10)−0.0031 (11)
S1—C21.695 (3)C1—H1B0.9800
O1—C51.367 (3)C1—H1C0.9800
O1—H1o0.84 (3)C3—C41.450 (4)
O2—C81.379 (3)C3—H30.9500
O2—H2o0.84 (3)C4—C51.401 (4)
N1—C21.325 (3)C4—C91.403 (3)
N1—C11.453 (3)C5—C61.388 (4)
N1—H1n0.84 (3)C6—C71.393 (3)
N2—C21.349 (3)C6—H60.9500
N2—N31.382 (3)C7—C81.383 (4)
N2—H2n0.84 (3)C7—H70.9500
N3—C31.286 (3)C8—C91.379 (4)
C1—H1A0.9800C9—H90.9500
C5—O1—H1O110 (2)C4—C3—H3118.6
C8—O2—H2O117 (3)C5—C4—C9118.9 (2)
C2—N1—C1123.8 (2)C5—C4—C3123.2 (2)
C2—N1—H1N117 (2)C9—C4—C3117.9 (2)
C1—N1—H1N119 (2)O1—C5—C6117.7 (2)
C2—N2—N3121.3 (2)O1—C5—C4122.3 (2)
C2—N2—H2N122 (2)C6—C5—C4120.0 (2)
N3—N2—H2N116 (2)C5—C6—C7120.1 (3)
C3—N3—N2114.5 (2)C5—C6—H6120.0
N1—C1—H1A109.5C7—C6—H6120.0
N1—C1—H1B109.5C8—C7—C6120.3 (2)
H1A—C1—H1B109.5C8—C7—H7119.9
N1—C1—H1C109.5C6—C7—H7119.9
H1A—C1—H1C109.5O2—C8—C9116.7 (2)
H1B—C1—H1C109.5O2—C8—C7123.3 (2)
N1—C2—N2118.2 (2)C9—C8—C7119.9 (2)
N1—C2—S1123.80 (19)C8—C9—C4120.8 (2)
N2—C2—S1118.0 (2)C8—C9—H9119.6
N3—C3—C4122.7 (2)C4—C9—H9119.6
N3—C3—H3118.6
C2—N2—N3—C3−175.1 (2)C3—C4—C5—C6−177.4 (2)
C1—N1—C2—N2178.3 (2)O1—C5—C6—C7178.8 (2)
C1—N1—C2—S1−2.5 (4)C4—C5—C6—C7−2.0 (4)
N3—N2—C2—N1−11.0 (4)C5—C6—C7—C81.1 (4)
N3—N2—C2—S1169.69 (19)C6—C7—C8—O2179.7 (2)
N2—N3—C3—C4177.5 (2)C6—C7—C8—C90.2 (4)
N3—C3—C4—C5−0.6 (4)O2—C8—C9—C4179.8 (2)
N3—C3—C4—C9−179.5 (2)C7—C8—C9—C4−0.7 (4)
C9—C4—C5—O1−179.3 (2)C5—C4—C9—C8−0.2 (4)
C3—C4—C5—O11.8 (4)C3—C4—C9—C8178.8 (2)
C9—C4—C5—C61.5 (4)
D—H···AD—HH···AD···AD—H···A
O1—H1o···N30.84 (3)1.97 (2)2.698 (3)144 (3)
O2—H2o···S1i0.84 (3)2.46 (2)3.182 (2)144 (3)
N2—H2n···O1ii0.84 (3)2.47 (3)3.111 (3)134 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1o⋯N30.84 (3)1.97 (2)2.698 (3)144 (3)
O2—H2o⋯S1i0.84 (3)2.46 (2)3.182 (2)144 (3)
N2—H2n⋯O1ii0.84 (3)2.47 (3)3.111 (3)134 (3)

Symmetry codes: (i) ; (ii) .

  3 in total

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2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  (E)-3,4-Dihydroxy-benzaldehyde 4-ethyl-thio-semicarbazone.

Authors:  Safa'a Fares Kayed; Yang Farina; Ibrahim Baba; Jim Simpson
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-04-10
  3 in total
  1 in total

1.  2,4-Dihydroxy-benzaldehyde 4-methyl-thio-semicarbazone.

Authors:  Kong Wai Tan; Chew Hee Ng; Mohd Jamil Maah; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-31
  1 in total

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