Literature DB >> 21581327

4-(Dimethyl-amino)benzaldehyde 4-ethyl-thio-semicarbazone.

Abdussalam Salhin1, Norfarhah Abdul Razak, I A Rahman.   

Abstract

The title thio-semicarbazone derivative, C(12)H(18)N(4)S, features intra-molecular N-H⋯N and C-H⋯S hydrogen bonds which generate S(5) ring motifs. The dihedral angle between the benzene ring and the thio-urea unit is 6.30 (6)° indicating planarity in the mol-ecule. Inter-molecular N-H⋯S hydrogen bonds generate dimers with an R(2) (2)(8) ring motif. The methyl group of the N-ethyl residue is disordered and was refined with site occupancies of 0.521 (5) and 0.479 (5).

Entities:  

Year:  2008        PMID: 21581327      PMCID: PMC2960080          DOI: 10.1107/S1600536808037148

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For related structures and applications see: Beraldo et al. (2001 ▶); Kayed et al. (2008 ▶); Valdes-Martinez et al. (1990 ▶).

Experimental

Crystal data

C12H18N4S M = 250.36 Monoclinic, a = 9.3687 (2) Å b = 14.1872 (3) Å c = 10.2318 (2) Å β = 96.699 (1)° V = 1350.68 (5) Å3 Z = 4 Mo Kα radiation μ = 0.23 mm−1 T = 100 (1) K 0.59 × 0.36 × 0.22 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.879, T max = 0.953 30229 measured reflections 6825 independent reflections 5566 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.119 S = 1.04 6825 reflections 176 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.74 e Å−3 Δρmin = −0.39 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2005 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808037148/tk2323sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808037148/tk2323Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H18N4SF000 = 536
Mr = 250.36Dx = 1.231 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9949 reflections
a = 9.3687 (2) Åθ = 2.5–39.5º
b = 14.1872 (3) ŵ = 0.23 mm1
c = 10.2318 (2) ÅT = 100 (1) K
β = 96.699 (1)ºBlock, yellow
V = 1350.68 (5) Å30.59 × 0.36 × 0.22 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer6825 independent reflections
Radiation source: fine-focus sealed tube5566 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.036
T = 100(1) Kθmax = 37.0º
φ and ω scansθmin = 2.2º
Absorption correction: multi-scan(SADABS; Bruker, 2005)h = −15→13
Tmin = 0.879, Tmax = 0.953k = −24→20
30229 measured reflectionsl = −15→17
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.119  w = 1/[σ2(Fo2) + (0.0651P)2 + 0.2126P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
6825 reflectionsΔρmax = 0.74 e Å3
176 parametersΔρmin = −0.39 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Experimental. The low-temperature data was collected with the Oxford Cyrosystem Cobra low-temperature attachment.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.16244 (2)0.114147 (15)−0.039117 (18)0.01984 (6)
N1−0.30894 (9)0.10562 (6)0.82869 (8)0.02457 (15)
N2−0.01025 (7)0.10572 (5)0.29168 (6)0.01690 (12)
N30.02454 (7)0.08428 (5)0.16770 (6)0.01731 (12)
N40.18487 (7)0.20579 (5)0.19197 (7)0.01837 (12)
C1−0.09174 (8)0.13272 (6)0.55310 (7)0.01760 (13)
H1A−0.01380.16800.53230.021*
C2−0.14161 (8)0.14561 (6)0.67363 (7)0.01834 (13)
H2A−0.09770.19000.73190.022*
C3−0.25861 (8)0.09230 (6)0.70986 (7)0.01732 (13)
C4−0.32165 (9)0.02550 (6)0.61854 (8)0.01997 (14)
H4A−0.3979−0.01130.63960.024*
C5−0.27073 (9)0.01429 (6)0.49756 (8)0.01935 (14)
H5A−0.3142−0.03000.43880.023*
C6−0.15624 (8)0.06743 (5)0.46132 (7)0.01601 (12)
C7−0.10836 (8)0.05380 (6)0.33282 (7)0.01745 (13)
H7A−0.14980.00620.27860.021*
C80.12430 (8)0.13664 (6)0.11598 (7)0.01551 (12)
C90.29288 (10)0.27026 (6)0.15428 (9)0.02484 (16)
H9A0.28670.32790.20240.030*0.521 (5)
H9B0.27020.28480.06260.030*0.521 (5)
H9C0.28770.32910.19990.030*0.479 (5)
H9D0.27670.28230.06140.030*0.479 (5)
C10A0.4427 (11)0.2356 (8)0.1674 (8)0.0361 (12)0.521 (5)
H10A0.50450.28410.14030.054*0.521 (5)
H10B0.44860.18100.11280.054*0.521 (5)
H10C0.47240.21920.25750.054*0.521 (5)
C10B0.4457 (14)0.2268 (10)0.1992 (9)0.0394 (15)0.479 (5)
H10D0.45580.21600.29250.059*0.479 (5)
H10E0.51880.26980.17820.059*0.479 (5)
H10F0.45540.16810.15440.059*0.479 (5)
C11−0.43497 (11)0.05588 (7)0.86103 (10)0.02942 (19)
H11A−0.51070.06190.78980.044*
H11B−0.46570.08230.93950.044*
H11C−0.4121−0.00960.87530.044*
C12−0.24779 (10)0.17816 (8)0.91858 (9)0.02932 (19)
H12A−0.14520.17100.93250.044*
H12B−0.28640.17221.00110.044*
H12C−0.27130.23920.88150.044*
H1N40.1570 (14)0.2111 (10)0.2711 (14)0.032 (3)*
H1N3−0.0171 (15)0.0353 (11)0.1243 (14)0.035 (4)*
U11U22U33U12U13U23
S10.02294 (10)0.02210 (11)0.01529 (9)−0.00401 (7)0.00569 (6)−0.00261 (6)
N10.0315 (4)0.0243 (4)0.0202 (3)−0.0016 (3)0.0121 (3)−0.0011 (2)
N20.0198 (3)0.0176 (3)0.0137 (2)−0.0005 (2)0.0038 (2)−0.0006 (2)
N30.0206 (3)0.0178 (3)0.0141 (2)−0.0036 (2)0.0043 (2)−0.0018 (2)
N40.0212 (3)0.0178 (3)0.0166 (3)−0.0039 (2)0.0044 (2)−0.0022 (2)
C10.0179 (3)0.0185 (3)0.0166 (3)−0.0026 (2)0.0028 (2)−0.0005 (2)
C20.0199 (3)0.0199 (3)0.0152 (3)−0.0015 (3)0.0024 (2)−0.0015 (2)
C30.0205 (3)0.0157 (3)0.0166 (3)0.0026 (2)0.0057 (2)0.0018 (2)
C40.0215 (3)0.0171 (3)0.0226 (3)−0.0025 (3)0.0082 (3)−0.0007 (3)
C50.0213 (3)0.0167 (3)0.0208 (3)−0.0040 (2)0.0060 (2)−0.0031 (2)
C60.0181 (3)0.0149 (3)0.0153 (3)−0.0008 (2)0.0032 (2)−0.0001 (2)
C70.0199 (3)0.0168 (3)0.0160 (3)−0.0013 (2)0.0034 (2)−0.0013 (2)
C80.0162 (3)0.0156 (3)0.0148 (3)0.0000 (2)0.0017 (2)0.0010 (2)
C90.0294 (4)0.0199 (4)0.0269 (4)−0.0092 (3)0.0107 (3)−0.0057 (3)
C10A0.0211 (12)0.032 (2)0.057 (3)−0.0087 (13)0.011 (2)−0.015 (2)
C10B0.0265 (14)0.036 (2)0.057 (4)−0.0113 (14)0.009 (3)−0.011 (3)
C110.0374 (5)0.0252 (4)0.0291 (4)−0.0005 (4)0.0190 (4)0.0033 (3)
C120.0275 (4)0.0409 (6)0.0199 (3)0.0028 (4)0.0037 (3)−0.0083 (3)
S1—C81.6971 (7)C6—C71.4508 (10)
N1—C31.3675 (10)C7—H7A0.9300
N1—C111.4466 (12)C9—C10A1.479 (10)
N1—C121.4528 (13)C9—C10B1.577 (13)
N2—C71.2864 (10)C9—H9A0.9600
N2—N31.3800 (9)C9—H9B0.9600
N3—C81.3494 (10)C9—H9C0.9600
N3—H1N30.890 (15)C9—H9D0.9600
N4—C81.3365 (10)C10A—H10A0.9600
N4—C91.4492 (11)C10A—H10B0.9600
N4—H1N40.883 (14)C10A—H10C0.9600
C1—C21.3810 (10)C10B—H10D0.9600
C1—C61.4045 (11)C10B—H10E0.9600
C1—H1A0.9300C10B—H10F0.9600
C2—C31.4162 (11)C11—H11A0.9600
C2—H2A0.9300C11—H11B0.9600
C3—C41.4111 (12)C11—H11C0.9600
C4—C51.3867 (11)C12—H12A0.9600
C4—H4A0.9300C12—H12B0.9600
C5—C61.3961 (11)C12—H12C0.9600
C5—H5A0.9300
C3—N1—C11120.75 (8)C10A—C9—H9A110.5
C3—N1—C12120.62 (8)C10B—C9—H9A106.9
C11—N1—C12118.22 (7)N4—C9—H9B108.3
C7—N2—N3115.40 (7)C10A—C9—H9B105.1
C8—N3—N2119.20 (7)C10B—C9—H9B117.3
C8—N3—H1N3121.2 (9)H9A—C9—H9B107.4
N2—N3—H1N3119.6 (9)N4—C9—H9C110.0
C8—N4—C9124.80 (7)C10A—C9—H9C110.3
C8—N4—H1N4116.4 (9)C10B—C9—H9C107.1
C9—N4—H1N4118.7 (9)H9B—C9—H9C105.7
C2—C1—C6121.36 (7)N4—C9—H9D110.0
C2—C1—H1A119.3C10A—C9—H9D100.8
C6—C1—H1A119.3C10B—C9—H9D113.0
C1—C2—C3121.05 (7)H9A—C9—H9D110.1
C1—C2—H2A119.5H9C—C9—H9D108.4
C3—C2—H2A119.5C9—C10A—H10A109.5
N1—C3—C4121.35 (7)C9—C10A—H10B109.5
N1—C3—C2121.11 (7)C9—C10A—H10C109.5
C4—C3—C2117.53 (7)C9—C10B—H10D109.5
C5—C4—C3120.47 (7)C9—C10B—H10E109.5
C5—C4—H4A119.8H10D—C10B—H10E109.5
C3—C4—H4A119.8C9—C10B—H10F109.5
C4—C5—C6122.02 (7)H10D—C10B—H10F109.5
C4—C5—H5A119.0H10E—C10B—H10F109.5
C6—C5—H5A119.0N1—C11—H11A109.5
C5—C6—C1117.54 (7)N1—C11—H11B109.5
C5—C6—C7119.81 (7)H11A—C11—H11B109.5
C1—C6—C7122.65 (7)N1—C11—H11C109.5
N2—C7—C6121.90 (7)H11A—C11—H11C109.5
N2—C7—H7A119.1H11B—C11—H11C109.5
C6—C7—H7A119.1N1—C12—H12A109.5
N4—C8—N3116.26 (6)N1—C12—H12B109.5
N4—C8—S1124.10 (6)H12A—C12—H12B109.5
N3—C8—S1119.62 (6)N1—C12—H12C109.5
N4—C9—C10A116.8 (4)H12A—C12—H12C109.5
N4—C9—C10B108.3 (4)H12B—C12—H12C109.5
N4—C9—H9A108.4
C7—N2—N3—C8178.60 (7)C4—C5—C6—C7−179.19 (8)
C6—C1—C2—C30.93 (12)C2—C1—C6—C5−1.47 (12)
C11—N1—C3—C4−4.17 (13)C2—C1—C6—C7178.59 (8)
C12—N1—C3—C4−176.68 (8)N3—N2—C7—C6179.78 (7)
C11—N1—C3—C2175.45 (8)C5—C6—C7—N2174.99 (8)
C12—N1—C3—C22.93 (13)C1—C6—C7—N2−5.08 (12)
C1—C2—C3—N1−179.39 (8)C9—N4—C8—N3−179.39 (8)
C1—C2—C3—C40.24 (12)C9—N4—C8—S1−1.06 (12)
N1—C3—C4—C5178.80 (8)N2—N3—C8—N41.21 (11)
C2—C3—C4—C5−0.82 (12)N2—N3—C8—S1−177.20 (5)
C3—C4—C5—C60.26 (13)C8—N4—C9—C10A−81.0 (4)
C4—C5—C6—C10.88 (12)C8—N4—C9—C10B−90.9 (4)
D—H···AD—HH···AD···AD—H···A
N3—H1N3···S1i0.891 (15)2.613 (15)3.4910 (7)168.8 (12)
N4—H1N4···N20.885 (14)2.193 (14)2.6140 (10)108.7 (11)
C9—H9B···S10.962.783.1225 (9)102
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H1N3⋯S1i0.891 (15)2.613 (15)3.4910 (7)168.8 (12)
N4—H1N4⋯N20.885 (14)2.193 (14)2.6140 (10)108.7 (11)
C9—H9B⋯S10.962.783.1225 (9)102

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (E)-3,4-Dihydroxy-benzaldehyde 4-ethyl-thio-semicarbazone.

Authors:  Safa'a Fares Kayed; Yang Farina; Ibrahim Baba; Jim Simpson
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-04-10
  2 in total
  2 in total

1.  Ethyl 4-(1,3-dioxo-2,3-dihydro-1H-benzo[de]isoquinolin-2-yl)benzoate.

Authors:  Yi Chen Chan; Abdussalam Salhin; Melati Khairuddean; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-11

2.  Flow injection analysis of mercury using 4-(dimethylamino) benzaldehyde-4-ethylthiosemicarbazone as the ionophore of a coated wire electrode.

Authors:  Tara F Tahir; Abdussalam Salhin; Sulaiman Ab Ghani
Journal:  Sensors (Basel)       Date:  2012-11-06       Impact factor: 3.576

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.