| Literature DB >> 21581327 |
Abdussalam Salhin1, Norfarhah Abdul Razak, I A Rahman.
Abstract
The title thio-semicarbazone derivative, C(12)H(18)N(4)S, features intra-molecular N-H⋯N and C-H⋯S hydrogen bonds which generate S(5) ring motifs. The dihedral angle between the benzene ring and the thio-urea unit is 6.30 (6)° indicating planarity in the mol-ecule. Inter-molecular N-H⋯S hydrogen bonds generate dimers with an R(2) (2)(8) ring motif. The methyl group of the N-ethyl residue is disordered and was refined with site occupancies of 0.521 (5) and 0.479 (5).Entities:
Year: 2008 PMID: 21581327 PMCID: PMC2960080 DOI: 10.1107/S1600536808037148
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H18N4S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 9949 reflections |
| θ = 2.5–39.5º | |
| µ = 0.23 mm−1 | |
| β = 96.699 (1)º | Block, yellow |
| 0.59 × 0.36 × 0.22 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 6825 independent reflections |
| Radiation source: fine-focus sealed tube | 5566 reflections with |
| Monochromator: graphite | |
| θmax = 37.0º | |
| φ and ω scans | θmin = 2.2º |
| Absorption correction: multi-scan( | |
| 30229 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| | |
| (Δ/σ)max = 0.001 | |
| 6825 reflections | Δρmax = 0.74 e Å−3 |
| 176 parameters | Δρmin = −0.39 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Experimental. The low-temperature data was collected with the Oxford Cyrosystem Cobra low-temperature attachment. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| S1 | 0.16244 (2) | 0.114147 (15) | −0.039117 (18) | 0.01984 (6) | |
| N1 | −0.30894 (9) | 0.10562 (6) | 0.82869 (8) | 0.02457 (15) | |
| N2 | −0.01025 (7) | 0.10572 (5) | 0.29168 (6) | 0.01690 (12) | |
| N3 | 0.02454 (7) | 0.08428 (5) | 0.16770 (6) | 0.01731 (12) | |
| N4 | 0.18487 (7) | 0.20579 (5) | 0.19197 (7) | 0.01837 (12) | |
| C1 | −0.09174 (8) | 0.13272 (6) | 0.55310 (7) | 0.01760 (13) | |
| H1A | −0.0138 | 0.1680 | 0.5323 | 0.021* | |
| C2 | −0.14161 (8) | 0.14561 (6) | 0.67363 (7) | 0.01834 (13) | |
| H2A | −0.0977 | 0.1900 | 0.7319 | 0.022* | |
| C3 | −0.25861 (8) | 0.09230 (6) | 0.70986 (7) | 0.01732 (13) | |
| C4 | −0.32165 (9) | 0.02550 (6) | 0.61854 (8) | 0.01997 (14) | |
| H4A | −0.3979 | −0.0113 | 0.6396 | 0.024* | |
| C5 | −0.27073 (9) | 0.01429 (6) | 0.49756 (8) | 0.01935 (14) | |
| H5A | −0.3142 | −0.0300 | 0.4388 | 0.023* | |
| C6 | −0.15624 (8) | 0.06743 (5) | 0.46132 (7) | 0.01601 (12) | |
| C7 | −0.10836 (8) | 0.05380 (6) | 0.33282 (7) | 0.01745 (13) | |
| H7A | −0.1498 | 0.0062 | 0.2786 | 0.021* | |
| C8 | 0.12430 (8) | 0.13664 (6) | 0.11598 (7) | 0.01551 (12) | |
| C9 | 0.29288 (10) | 0.27026 (6) | 0.15428 (9) | 0.02484 (16) | |
| H9A | 0.2867 | 0.3279 | 0.2024 | 0.030* | 0.521 (5) |
| H9B | 0.2702 | 0.2848 | 0.0626 | 0.030* | 0.521 (5) |
| H9C | 0.2877 | 0.3291 | 0.1999 | 0.030* | 0.479 (5) |
| H9D | 0.2767 | 0.2823 | 0.0614 | 0.030* | 0.479 (5) |
| C10A | 0.4427 (11) | 0.2356 (8) | 0.1674 (8) | 0.0361 (12) | 0.521 (5) |
| H10A | 0.5045 | 0.2841 | 0.1403 | 0.054* | 0.521 (5) |
| H10B | 0.4486 | 0.1810 | 0.1128 | 0.054* | 0.521 (5) |
| H10C | 0.4724 | 0.2192 | 0.2575 | 0.054* | 0.521 (5) |
| C10B | 0.4457 (14) | 0.2268 (10) | 0.1992 (9) | 0.0394 (15) | 0.479 (5) |
| H10D | 0.4558 | 0.2160 | 0.2925 | 0.059* | 0.479 (5) |
| H10E | 0.5188 | 0.2698 | 0.1782 | 0.059* | 0.479 (5) |
| H10F | 0.4554 | 0.1681 | 0.1544 | 0.059* | 0.479 (5) |
| C11 | −0.43497 (11) | 0.05588 (7) | 0.86103 (10) | 0.02942 (19) | |
| H11A | −0.5107 | 0.0619 | 0.7898 | 0.044* | |
| H11B | −0.4657 | 0.0823 | 0.9395 | 0.044* | |
| H11C | −0.4121 | −0.0096 | 0.8753 | 0.044* | |
| C12 | −0.24779 (10) | 0.17816 (8) | 0.91858 (9) | 0.02932 (19) | |
| H12A | −0.1452 | 0.1710 | 0.9325 | 0.044* | |
| H12B | −0.2864 | 0.1722 | 1.0011 | 0.044* | |
| H12C | −0.2713 | 0.2392 | 0.8815 | 0.044* | |
| H1N4 | 0.1570 (14) | 0.2111 (10) | 0.2711 (14) | 0.032 (3)* | |
| H1N3 | −0.0171 (15) | 0.0353 (11) | 0.1243 (14) | 0.035 (4)* |
| S1 | 0.02294 (10) | 0.02210 (11) | 0.01529 (9) | −0.00401 (7) | 0.00569 (6) | −0.00261 (6) |
| N1 | 0.0315 (4) | 0.0243 (4) | 0.0202 (3) | −0.0016 (3) | 0.0121 (3) | −0.0011 (2) |
| N2 | 0.0198 (3) | 0.0176 (3) | 0.0137 (2) | −0.0005 (2) | 0.0038 (2) | −0.0006 (2) |
| N3 | 0.0206 (3) | 0.0178 (3) | 0.0141 (2) | −0.0036 (2) | 0.0043 (2) | −0.0018 (2) |
| N4 | 0.0212 (3) | 0.0178 (3) | 0.0166 (3) | −0.0039 (2) | 0.0044 (2) | −0.0022 (2) |
| C1 | 0.0179 (3) | 0.0185 (3) | 0.0166 (3) | −0.0026 (2) | 0.0028 (2) | −0.0005 (2) |
| C2 | 0.0199 (3) | 0.0199 (3) | 0.0152 (3) | −0.0015 (3) | 0.0024 (2) | −0.0015 (2) |
| C3 | 0.0205 (3) | 0.0157 (3) | 0.0166 (3) | 0.0026 (2) | 0.0057 (2) | 0.0018 (2) |
| C4 | 0.0215 (3) | 0.0171 (3) | 0.0226 (3) | −0.0025 (3) | 0.0082 (3) | −0.0007 (3) |
| C5 | 0.0213 (3) | 0.0167 (3) | 0.0208 (3) | −0.0040 (2) | 0.0060 (2) | −0.0031 (2) |
| C6 | 0.0181 (3) | 0.0149 (3) | 0.0153 (3) | −0.0008 (2) | 0.0032 (2) | −0.0001 (2) |
| C7 | 0.0199 (3) | 0.0168 (3) | 0.0160 (3) | −0.0013 (2) | 0.0034 (2) | −0.0013 (2) |
| C8 | 0.0162 (3) | 0.0156 (3) | 0.0148 (3) | 0.0000 (2) | 0.0017 (2) | 0.0010 (2) |
| C9 | 0.0294 (4) | 0.0199 (4) | 0.0269 (4) | −0.0092 (3) | 0.0107 (3) | −0.0057 (3) |
| C10A | 0.0211 (12) | 0.032 (2) | 0.057 (3) | −0.0087 (13) | 0.011 (2) | −0.015 (2) |
| C10B | 0.0265 (14) | 0.036 (2) | 0.057 (4) | −0.0113 (14) | 0.009 (3) | −0.011 (3) |
| C11 | 0.0374 (5) | 0.0252 (4) | 0.0291 (4) | −0.0005 (4) | 0.0190 (4) | 0.0033 (3) |
| C12 | 0.0275 (4) | 0.0409 (6) | 0.0199 (3) | 0.0028 (4) | 0.0037 (3) | −0.0083 (3) |
| S1—C8 | 1.6971 (7) | C6—C7 | 1.4508 (10) |
| N1—C3 | 1.3675 (10) | C7—H7A | 0.9300 |
| N1—C11 | 1.4466 (12) | C9—C10A | 1.479 (10) |
| N1—C12 | 1.4528 (13) | C9—C10B | 1.577 (13) |
| N2—C7 | 1.2864 (10) | C9—H9A | 0.9600 |
| N2—N3 | 1.3800 (9) | C9—H9B | 0.9600 |
| N3—C8 | 1.3494 (10) | C9—H9C | 0.9600 |
| N3—H1N3 | 0.890 (15) | C9—H9D | 0.9600 |
| N4—C8 | 1.3365 (10) | C10A—H10A | 0.9600 |
| N4—C9 | 1.4492 (11) | C10A—H10B | 0.9600 |
| N4—H1N4 | 0.883 (14) | C10A—H10C | 0.9600 |
| C1—C2 | 1.3810 (10) | C10B—H10D | 0.9600 |
| C1—C6 | 1.4045 (11) | C10B—H10E | 0.9600 |
| C1—H1A | 0.9300 | C10B—H10F | 0.9600 |
| C2—C3 | 1.4162 (11) | C11—H11A | 0.9600 |
| C2—H2A | 0.9300 | C11—H11B | 0.9600 |
| C3—C4 | 1.4111 (12) | C11—H11C | 0.9600 |
| C4—C5 | 1.3867 (11) | C12—H12A | 0.9600 |
| C4—H4A | 0.9300 | C12—H12B | 0.9600 |
| C5—C6 | 1.3961 (11) | C12—H12C | 0.9600 |
| C5—H5A | 0.9300 | ||
| C3—N1—C11 | 120.75 (8) | C10A—C9—H9A | 110.5 |
| C3—N1—C12 | 120.62 (8) | C10B—C9—H9A | 106.9 |
| C11—N1—C12 | 118.22 (7) | N4—C9—H9B | 108.3 |
| C7—N2—N3 | 115.40 (7) | C10A—C9—H9B | 105.1 |
| C8—N3—N2 | 119.20 (7) | C10B—C9—H9B | 117.3 |
| C8—N3—H1N3 | 121.2 (9) | H9A—C9—H9B | 107.4 |
| N2—N3—H1N3 | 119.6 (9) | N4—C9—H9C | 110.0 |
| C8—N4—C9 | 124.80 (7) | C10A—C9—H9C | 110.3 |
| C8—N4—H1N4 | 116.4 (9) | C10B—C9—H9C | 107.1 |
| C9—N4—H1N4 | 118.7 (9) | H9B—C9—H9C | 105.7 |
| C2—C1—C6 | 121.36 (7) | N4—C9—H9D | 110.0 |
| C2—C1—H1A | 119.3 | C10A—C9—H9D | 100.8 |
| C6—C1—H1A | 119.3 | C10B—C9—H9D | 113.0 |
| C1—C2—C3 | 121.05 (7) | H9A—C9—H9D | 110.1 |
| C1—C2—H2A | 119.5 | H9C—C9—H9D | 108.4 |
| C3—C2—H2A | 119.5 | C9—C10A—H10A | 109.5 |
| N1—C3—C4 | 121.35 (7) | C9—C10A—H10B | 109.5 |
| N1—C3—C2 | 121.11 (7) | C9—C10A—H10C | 109.5 |
| C4—C3—C2 | 117.53 (7) | C9—C10B—H10D | 109.5 |
| C5—C4—C3 | 120.47 (7) | C9—C10B—H10E | 109.5 |
| C5—C4—H4A | 119.8 | H10D—C10B—H10E | 109.5 |
| C3—C4—H4A | 119.8 | C9—C10B—H10F | 109.5 |
| C4—C5—C6 | 122.02 (7) | H10D—C10B—H10F | 109.5 |
| C4—C5—H5A | 119.0 | H10E—C10B—H10F | 109.5 |
| C6—C5—H5A | 119.0 | N1—C11—H11A | 109.5 |
| C5—C6—C1 | 117.54 (7) | N1—C11—H11B | 109.5 |
| C5—C6—C7 | 119.81 (7) | H11A—C11—H11B | 109.5 |
| C1—C6—C7 | 122.65 (7) | N1—C11—H11C | 109.5 |
| N2—C7—C6 | 121.90 (7) | H11A—C11—H11C | 109.5 |
| N2—C7—H7A | 119.1 | H11B—C11—H11C | 109.5 |
| C6—C7—H7A | 119.1 | N1—C12—H12A | 109.5 |
| N4—C8—N3 | 116.26 (6) | N1—C12—H12B | 109.5 |
| N4—C8—S1 | 124.10 (6) | H12A—C12—H12B | 109.5 |
| N3—C8—S1 | 119.62 (6) | N1—C12—H12C | 109.5 |
| N4—C9—C10A | 116.8 (4) | H12A—C12—H12C | 109.5 |
| N4—C9—C10B | 108.3 (4) | H12B—C12—H12C | 109.5 |
| N4—C9—H9A | 108.4 | ||
| C7—N2—N3—C8 | 178.60 (7) | C4—C5—C6—C7 | −179.19 (8) |
| C6—C1—C2—C3 | 0.93 (12) | C2—C1—C6—C5 | −1.47 (12) |
| C11—N1—C3—C4 | −4.17 (13) | C2—C1—C6—C7 | 178.59 (8) |
| C12—N1—C3—C4 | −176.68 (8) | N3—N2—C7—C6 | 179.78 (7) |
| C11—N1—C3—C2 | 175.45 (8) | C5—C6—C7—N2 | 174.99 (8) |
| C12—N1—C3—C2 | 2.93 (13) | C1—C6—C7—N2 | −5.08 (12) |
| C1—C2—C3—N1 | −179.39 (8) | C9—N4—C8—N3 | −179.39 (8) |
| C1—C2—C3—C4 | 0.24 (12) | C9—N4—C8—S1 | −1.06 (12) |
| N1—C3—C4—C5 | 178.80 (8) | N2—N3—C8—N4 | 1.21 (11) |
| C2—C3—C4—C5 | −0.82 (12) | N2—N3—C8—S1 | −177.20 (5) |
| C3—C4—C5—C6 | 0.26 (13) | C8—N4—C9—C10A | −81.0 (4) |
| C4—C5—C6—C1 | 0.88 (12) | C8—N4—C9—C10B | −90.9 (4) |
| H··· | ||||
| N3—H1N3···S1i | 0.891 (15) | 2.613 (15) | 3.4910 (7) | 168.8 (12) |
| N4—H1N4···N2 | 0.885 (14) | 2.193 (14) | 2.6140 (10) | 108.7 (11) |
| C9—H9B···S1 | 0.96 | 2.78 | 3.1225 (9) | 102 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H1 | 0.891 (15) | 2.613 (15) | 3.4910 (7) | 168.8 (12) |
| N4—H1 | 0.885 (14) | 2.193 (14) | 2.6140 (10) | 108.7 (11) |
| C9—H9 | 0.96 | 2.78 | 3.1225 (9) | 102 |
Symmetry code: (i) .