Literature DB >> 21754150

3-[(E)-(4-Chloro-benzyl-idene)amino]-1-phenyl-thio-urea.

Nur Nadia Dzulkifli, Yang Farina, Bohari M Yamin, Ibrahim Baba, Edward R T Tiekink.   

Abstract

In the title compound, C(14)H(12)ClN(3)S, the dihedral angle between the terminal benzene rings is 56.6 (2)°; the benzene rings lie to the same side of the mol-ecule. The major twist in the mol-ecule occurs around the C(ar)-N bond (ar is aromatic) [C-N-C-C = 49.9 (5)°]. The configuration about the N=C bond [1.271 (4) Å] is E. The amine H atoms lie on opposite sides of the mol-ecule with one forming an intra-molecular N-H⋯N(imine) hydrogen bond and an S(5) ring. In the crystal, centrosymmetric dimers are formed via {⋯HNC=S}(2) synthons.

Entities:  

Year:  2011        PMID: 21754150      PMCID: PMC3100056          DOI: 10.1107/S1600536811008920

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Cunha et al. (2007 ▶); Kayed et al. (2008 ▶).

Experimental

Crystal data

C14H12ClN3S M = 289.78 Monoclinic, a = 15.082 (5) Å b = 6.560 (2) Å c = 15.205 (5) Å β = 110.272 (8)° V = 1411.2 (8) Å3 Z = 4 Mo Kα radiation μ = 0.41 mm−1 T = 293 K 0.39 × 0.21 × 0.02 mm

Data collection

Oxford Diffraction Xcaliber Eos Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.857, T max = 0.992 8647 measured reflections 2905 independent reflections 1572 reflections with I > 2σ(I) R int = 0.080

Refinement

R[F 2 > 2σ(F 2)] = 0.068 wR(F 2) = 0.137 S = 1.00 2905 reflections 178 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.32 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811008920/hb5814sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811008920/hb5814Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H12ClN3SF(000) = 600
Mr = 289.78Dx = 1.364 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 752 reflections
a = 15.082 (5) Åθ = 2.4–19.2°
b = 6.560 (2) ŵ = 0.41 mm1
c = 15.205 (5) ÅT = 293 K
β = 110.272 (8)°Plate, light-pink
V = 1411.2 (8) Å30.39 × 0.21 × 0.02 mm
Z = 4
Oxford Diffraction Xcaliber Eos Gemini diffractometer2905 independent reflections
Radiation source: fine-focus sealed tube1572 reflections with I > 2σ(I)
graphiteRint = 0.080
Detector resolution: 16.1952 pixels mm-1θmax = 26.5°, θmin = 1.6°
ω scansh = −17→18
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −8→8
Tmin = 0.857, Tmax = 0.992l = −17→19
8647 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.068Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.137H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0511P)2] where P = (Fo2 + 2Fc2)/3
2905 reflections(Δ/σ)max < 0.001
178 parametersΔρmax = 0.32 e Å3
2 restraintsΔρmin = −0.21 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.89088 (7)1.20521 (16)0.14891 (8)0.0759 (4)
S10.43050 (7)−0.03791 (15)0.10962 (7)0.0525 (3)
N10.4748 (2)0.3287 (5)0.1918 (2)0.0506 (8)
H1n0.503 (2)0.441 (3)0.192 (3)0.061*
N20.5408 (2)0.2474 (4)0.0834 (2)0.0440 (8)
H2n0.548 (2)0.170 (4)0.0405 (18)0.053*
N30.58808 (19)0.4293 (4)0.1032 (2)0.0420 (7)
C10.4240 (2)0.3118 (6)0.2544 (3)0.0466 (9)
C20.4352 (3)0.1467 (6)0.3130 (3)0.0602 (11)
H20.47430.03950.30970.072*
C30.3891 (3)0.1397 (7)0.3761 (3)0.0720 (13)
H30.39720.02840.41590.086*
C40.3307 (3)0.2969 (8)0.3807 (3)0.0710 (13)
H40.29920.29180.42350.085*
C50.3189 (3)0.4607 (8)0.3223 (4)0.0758 (13)
H50.27850.56610.32440.091*
C60.3670 (3)0.4695 (6)0.2603 (3)0.0632 (11)
H60.36070.58330.22220.076*
C70.4841 (2)0.1899 (5)0.1310 (2)0.0409 (8)
C80.6458 (2)0.4670 (5)0.0611 (3)0.0433 (9)
H80.65240.37380.01770.052*
C90.7018 (2)0.6534 (5)0.0794 (2)0.0396 (8)
C100.6886 (2)0.8062 (5)0.1361 (2)0.0440 (9)
H100.64020.79430.16050.053*
C110.7458 (2)0.9755 (6)0.1570 (2)0.0497 (10)
H110.73661.07730.19550.060*
C120.8168 (2)0.9922 (5)0.1201 (3)0.0476 (9)
C130.8311 (3)0.8459 (6)0.0628 (3)0.0549 (11)
H130.87910.85990.03800.066*
C140.7732 (2)0.6764 (6)0.0421 (3)0.0529 (10)
H140.78210.57620.00270.063*
U11U22U33U12U13U23
Cl10.0720 (7)0.0538 (7)0.0900 (9)−0.0255 (5)0.0129 (6)0.0056 (6)
S10.0613 (6)0.0469 (6)0.0554 (6)−0.0150 (5)0.0281 (5)−0.0079 (5)
N10.056 (2)0.045 (2)0.062 (2)−0.0107 (15)0.0344 (17)−0.0113 (18)
N20.0534 (18)0.0379 (19)0.048 (2)−0.0114 (14)0.0273 (16)−0.0095 (14)
N30.0434 (16)0.0386 (18)0.0456 (18)−0.0051 (14)0.0173 (15)−0.0023 (14)
C10.042 (2)0.050 (2)0.050 (2)−0.0068 (18)0.0194 (18)−0.011 (2)
C20.068 (3)0.061 (3)0.060 (3)0.009 (2)0.032 (2)0.004 (2)
C30.095 (3)0.072 (3)0.061 (3)0.001 (3)0.043 (3)0.009 (2)
C40.073 (3)0.092 (4)0.061 (3)−0.012 (3)0.040 (2)−0.012 (3)
C50.077 (3)0.082 (4)0.082 (3)0.017 (3)0.045 (3)−0.011 (3)
C60.073 (3)0.058 (3)0.065 (3)0.006 (2)0.032 (2)−0.005 (2)
C70.040 (2)0.043 (2)0.041 (2)0.0024 (16)0.0163 (17)0.0000 (18)
C80.050 (2)0.040 (2)0.047 (2)−0.0006 (18)0.0249 (18)−0.0053 (18)
C90.044 (2)0.035 (2)0.041 (2)−0.0015 (16)0.0162 (17)0.0026 (17)
C100.044 (2)0.044 (2)0.046 (2)−0.0034 (17)0.0181 (18)0.0005 (19)
C110.058 (2)0.047 (2)0.042 (2)0.0007 (19)0.0145 (19)−0.0001 (19)
C120.047 (2)0.037 (2)0.052 (2)−0.0047 (17)0.0082 (19)0.0098 (18)
C130.053 (2)0.049 (3)0.073 (3)−0.0016 (19)0.035 (2)0.014 (2)
C140.062 (3)0.041 (2)0.065 (3)−0.0015 (18)0.034 (2)−0.002 (2)
Cl1—C121.748 (4)C4—H40.9300
S1—C71.676 (4)C5—C61.374 (5)
N1—C71.339 (4)C5—H50.9300
N1—C11.419 (4)C6—H60.9300
N1—H1n0.853 (10)C8—C91.457 (4)
N2—C71.352 (4)C8—H80.9300
N2—N31.369 (4)C9—C101.381 (4)
N2—H2n0.863 (10)C9—C141.387 (4)
N3—C81.271 (4)C10—C111.374 (4)
C1—C61.368 (5)C10—H100.9300
C1—C21.375 (5)C11—C121.375 (5)
C2—C31.366 (5)C11—H110.9300
C2—H20.9300C12—C131.363 (5)
C3—C41.374 (6)C13—C141.381 (5)
C3—H30.9300C13—H130.9300
C4—C51.366 (6)C14—H140.9300
C7—N1—C1128.3 (3)N1—C7—N2114.6 (3)
C7—N1—H1n114 (3)N1—C7—S1125.6 (3)
C1—N1—H1n117 (3)N2—C7—S1119.8 (3)
C7—N2—N3120.2 (3)N3—C8—C9121.4 (3)
C7—N2—H2n121 (2)N3—C8—H8119.3
N3—N2—H2n119 (2)C9—C8—H8119.3
C8—N3—N2117.1 (3)C10—C9—C14118.4 (3)
C6—C1—C2119.5 (4)C10—C9—C8121.9 (3)
C6—C1—N1118.9 (4)C14—C9—C8119.6 (3)
C2—C1—N1121.5 (3)C11—C10—C9121.1 (3)
C3—C2—C1120.2 (4)C11—C10—H10119.5
C3—C2—H2119.9C9—C10—H10119.5
C1—C2—H2119.9C10—C11—C12119.0 (4)
C2—C3—C4120.1 (4)C10—C11—H11120.5
C2—C3—H3119.9C12—C11—H11120.5
C4—C3—H3119.9C13—C12—C11121.5 (3)
C5—C4—C3119.9 (4)C13—C12—Cl1119.6 (3)
C5—C4—H4120.0C11—C12—Cl1118.8 (3)
C3—C4—H4120.0C12—C13—C14119.0 (3)
C4—C5—C6119.9 (4)C12—C13—H13120.5
C4—C5—H5120.1C14—C13—H13120.5
C6—C5—H5120.1C13—C14—C9120.9 (4)
C1—C6—C5120.4 (4)C13—C14—H14119.5
C1—C6—H6119.8C9—C14—H14119.5
C5—C6—H6119.8
C7—N2—N3—C8174.7 (3)N3—N2—C7—S1−177.2 (2)
C7—N1—C1—C6−134.1 (4)N2—N3—C8—C9−178.1 (3)
C7—N1—C1—C249.9 (5)N3—C8—C9—C10−6.3 (5)
C6—C1—C2—C30.5 (6)N3—C8—C9—C14171.1 (3)
N1—C1—C2—C3176.5 (4)C14—C9—C10—C11−1.3 (5)
C1—C2—C3—C40.5 (6)C8—C9—C10—C11176.1 (3)
C2—C3—C4—C5−0.2 (7)C9—C10—C11—C120.4 (5)
C3—C4—C5—C6−1.2 (7)C10—C11—C12—C130.6 (5)
C2—C1—C6—C5−2.0 (6)C10—C11—C12—Cl1−178.6 (3)
N1—C1—C6—C5−178.1 (4)C11—C12—C13—C14−0.5 (6)
C4—C5—C6—C12.3 (6)Cl1—C12—C13—C14178.7 (3)
C1—N1—C7—N2−177.2 (3)C12—C13—C14—C9−0.5 (6)
C1—N1—C7—S14.1 (5)C10—C9—C14—C131.3 (5)
N3—N2—C7—N14.1 (4)C8—C9—C14—C13−176.1 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1n···N30.85 (2)2.16 (4)2.601 (4)112 (3)
N2—H2n···S1i0.86 (3)2.57 (3)3.401 (3)164 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1n⋯N30.85 (2)2.16 (4)2.601 (4)112 (3)
N2—H2n⋯S1i0.86 (3)2.57 (3)3.401 (3)164 (2)

Symmetry code: (i) .

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Authors:  Safa'a Fares Kayed; Yang Farina; Ibrahim Baba; Jim Simpson
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-04-10
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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-16

2.  3-Cyclo-hexyl-1-(3,5-dinitro-benzo-yl)thio-urea.

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3.  3-(2-Hy-droxy-phen-yl)-1-{(E)-[1-(pyrazin-2-yl)ethyl-idene]amino}-thio-urea monohydrate.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-23

4.  3-{(E)-[1-(2-Hy-droxy-phen-yl)ethyl-idene]amino}-1-(2-methyl-phen-yl)thio-urea.

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