Literature DB >> 21201626

trans-Aqua-(4,7-diaza-decane-1,10-diamine-κN)fluoridochromium(III) bis-(perchlorate) monohydrate.

Jong-Ha Choi, Uk Lee.   

Abstract

In the title compound, [CrF(C(8)H(20)N(4))(H(2)O)](ClO(4))(2)·H(2)O, the Cr atom is in a slightly distorted octa-hedral environment, coordinated by four N atoms of the 4,7-diaza-decane-1,10-diamine ligand, one water mol-ecule and an F atom trans to water. The five-membered chelate ring is in a gauche form, while the two six-membered chelate rings are in chair conformations. The crystal structure is stabilized by several hydrogen bonds.

Entities:  

Year:  2008        PMID: 21201626      PMCID: PMC2960685          DOI: 10.1107/S1600536808026081

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Glerup et al. (1970 ▶). For related structures, see: Brencic et al. (1985 ▶); Choi et al. (1995 ▶, 2004 ▶, 2006 ▶, 2008 ▶). For other related literature, see: Choi & Hoggard (1992 ▶); Poon & Pun (1980 ▶); Stearns & Armstrong (1992 ▶).

Experimental

Crystal data

[CrF(C8H20N4)(H2O)](ClO4)2·H2O M = 480.23 Monoclinic, a = 9.950 (1) Å b = 16.893 (2) Å c = 12.008 (1) Å β = 108.65 (1)° V = 1912.4 (4) Å3 Z = 4 Mo Kα radiation μ = 0.94 mm−1 T = 298 (2) K 0.43 × 0.30 × 0.25 mm

Data collection

Stoe Stadi-4 diffractometer Absorption correction: numerical (X-SHAPE; Stoe, 1996 ▶) T min = 0.686, T max = 0.889 4347 measured reflections 4347 independent reflections 3245 reflections with I > 2σ(I) 3 standard reflections frequency: 60 min intensity decay: 3.1%

Refinement

R[F 2 > 2σ(F 2)] = 0.076 wR(F 2) = 0.228 S = 1.09 4347 reflections 243 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.07 e Å−3 Δρmin = −0.60 e Å−3 Data collection: STADI4 (Stoe & Cie, 1996 ▶); cell refinement: STADI4; data reduction: X-RED (Stoe & Cie, 1996 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808026081/cf2211sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808026081/cf2211Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[CrF(C8H20N4)(H2O)](ClO4)2·H2OF000 = 996
Mr = 480.23Dx = 1.668 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71069 Å
Hall symbol: -P 2ybcCell parameters from 32 reflections
a = 9.950 (1) Åθ = 19.0–20.8º
b = 16.893 (2) ŵ = 0.94 mm1
c = 12.008 (1) ÅT = 298 (2) K
β = 108.65 (1)ºBlock, dark red
V = 1912.4 (4) Å30.43 × 0.30 × 0.25 mm
Z = 4
Stoe Stadi-4 diffractometerRint = 0.0000
Radiation source: fine-focus sealed tubeθmax = 27.5º
Monochromator: graphiteθmin = 2.2º
T = 298(2) Kh = −12→12
ω/2–θ scansk = 0→21
Absorption correction: numerical(X-SHAPE; Stoe, 1996)l = 0→15
Tmin = 0.686, Tmax = 0.8893 standard reflections
4347 measured reflections every 60 min
4347 independent reflections intensity decay: 3.1%
3245 reflections with I > 2σ(I)
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.076H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.228  w = 1/[σ2(Fo2) + (0.1014P)2 + 6.2787P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max < 0.001
4347 reflectionsΔρmax = 1.07 e Å3
243 parametersΔρmin = −0.60 e Å3
3 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cr0.77207 (8)0.74161 (4)0.61410 (6)0.0294 (2)
Cl10.25308 (17)0.51481 (9)0.64339 (13)0.0538 (4)
Cl21.24851 (16)0.84876 (12)0.62990 (16)0.0643 (5)
F0.7140 (3)0.74557 (18)0.7485 (2)0.0404 (7)
N10.6809 (5)0.6308 (3)0.5748 (4)0.0458 (11)
H1AN0.71060.61060.51640.055*
N20.5732 (4)0.7824 (3)0.5160 (4)0.0454 (11)
H1N20.52720.79280.56880.055*
N30.8507 (5)0.8564 (3)0.6485 (4)0.0435 (10)
H3AN0.83380.87310.71390.052*
H3BN0.94550.85390.66540.052*
N40.9663 (4)0.6910 (3)0.7114 (4)0.0414 (10)
H4AN1.01050.67480.66070.050*
H4BN1.02030.72910.75650.050*
C10.9611 (7)0.6231 (4)0.7887 (5)0.0523 (14)
H1A0.91980.64050.84760.063*
H1B1.05690.60510.82910.063*
C20.8750 (8)0.5550 (4)0.7202 (7)0.0643 (18)
H2A0.89050.50890.77110.077*
H2B0.90950.54230.65540.077*
C30.7171 (8)0.5710 (4)0.6718 (6)0.0639 (18)
H3A0.66790.52190.64250.077*
H3B0.68400.58980.73480.077*
C40.5235 (7)0.6431 (5)0.5235 (6)0.0643 (19)
H4A0.47970.59670.47880.077*
H4B0.48270.65100.58600.077*
C50.4968 (6)0.7142 (5)0.4451 (5)0.065 (2)
H5A0.53110.70490.37910.078*
H5B0.39590.72520.41470.078*
C60.5603 (7)0.8554 (5)0.4447 (5)0.0629 (19)
H6A0.46070.86900.41100.076*
H6B0.59720.84520.38050.076*
C70.6384 (8)0.9245 (4)0.5152 (7)0.068 (2)
H7A0.61170.97190.46770.082*
H7B0.60700.93110.58330.082*
C80.7971 (7)0.9183 (4)0.5569 (6)0.0586 (16)
H8A0.82890.90630.49040.070*
H8B0.83720.96900.58850.070*
O10.2360 (12)0.5429 (5)0.5295 (7)0.143 (3)
O20.1991 (14)0.4382 (5)0.6357 (8)0.183 (5)
O30.3986 (11)0.5079 (10)0.6805 (16)0.257 (8)
O40.2177 (16)0.5591 (8)0.7161 (12)0.231 (7)
O51.1848 (9)0.8171 (7)0.7049 (9)0.173 (5)
O61.1523 (12)0.9046 (7)0.5676 (8)0.186 (5)
O71.2769 (14)0.7974 (8)0.5576 (17)0.277 (10)
O81.3760 (9)0.8831 (8)0.6872 (10)0.188 (5)
O1W0.8322 (4)0.7379 (3)0.4706 (3)0.0412 (9)
H1OA0.782 (7)0.743 (4)0.398 (6)0.07 (2)*
H1OB0.896 (6)0.714 (4)0.474 (5)0.046 (19)*
O2W1.0660 (6)0.6849 (4)0.4419 (5)0.0841 (17)
U11U22U33U12U13U23
Cr0.0281 (4)0.0384 (4)0.0229 (4)−0.0002 (3)0.0098 (3)−0.0013 (3)
Cl10.0632 (9)0.0531 (8)0.0533 (8)−0.0025 (7)0.0302 (7)−0.0047 (6)
Cl20.0436 (8)0.0758 (11)0.0728 (11)−0.0005 (7)0.0175 (7)0.0124 (9)
F0.0427 (16)0.0559 (18)0.0266 (13)−0.0032 (13)0.0166 (12)−0.0043 (12)
N10.049 (3)0.050 (3)0.044 (2)−0.015 (2)0.022 (2)−0.013 (2)
N20.032 (2)0.073 (3)0.032 (2)0.010 (2)0.0118 (17)0.001 (2)
N30.048 (3)0.040 (2)0.048 (3)−0.0004 (19)0.022 (2)−0.0008 (19)
N40.035 (2)0.051 (3)0.037 (2)0.0042 (19)0.0107 (18)0.0039 (19)
C10.064 (4)0.053 (3)0.042 (3)0.014 (3)0.019 (3)0.010 (3)
C20.083 (5)0.036 (3)0.078 (5)0.007 (3)0.032 (4)0.011 (3)
C30.082 (5)0.048 (3)0.071 (4)−0.019 (3)0.038 (4)−0.002 (3)
C40.043 (3)0.082 (5)0.068 (4)−0.026 (3)0.018 (3)−0.027 (4)
C50.033 (3)0.113 (6)0.041 (3)−0.008 (3)0.001 (2)−0.018 (4)
C60.048 (3)0.097 (5)0.045 (3)0.030 (3)0.017 (3)0.029 (3)
C70.077 (5)0.060 (4)0.077 (5)0.033 (4)0.036 (4)0.022 (4)
C80.067 (4)0.044 (3)0.077 (4)0.008 (3)0.041 (4)0.012 (3)
O10.220 (10)0.118 (6)0.095 (5)−0.040 (6)0.058 (6)−0.005 (5)
O20.337 (15)0.099 (6)0.131 (7)−0.105 (8)0.099 (9)−0.011 (5)
O30.109 (8)0.285 (16)0.40 (2)0.041 (10)0.120 (11)0.135 (16)
O40.320 (17)0.204 (12)0.246 (13)−0.030 (11)0.198 (13)−0.117 (10)
O50.113 (6)0.241 (12)0.196 (10)−0.005 (7)0.091 (7)0.089 (9)
O60.198 (10)0.226 (12)0.105 (6)0.110 (9)0.007 (6)0.029 (7)
O70.226 (13)0.185 (11)0.53 (3)−0.062 (9)0.278 (17)−0.190 (15)
O80.091 (6)0.270 (13)0.173 (9)−0.082 (7)0.002 (5)0.040 (9)
O1W0.0369 (19)0.063 (2)0.0266 (17)0.0085 (18)0.0144 (15)0.0048 (16)
O2W0.061 (3)0.110 (5)0.088 (4)0.030 (3)0.033 (3)0.003 (3)
Cr—F1.881 (3)N4—H4BN0.900
Cr—O1W1.997 (3)C1—C21.511 (10)
Cr—N12.068 (5)C1—H1A0.970
Cr—N22.070 (4)C1—H1B0.970
Cr—N32.082 (5)C2—C31.516 (10)
Cr—N42.095 (4)C2—H2A0.970
Cl1—O41.282 (8)C2—H2B0.970
Cl1—O31.377 (11)C3—H3A0.970
Cl1—O21.392 (8)C3—H3B0.970
Cl1—O11.405 (8)C4—C51.498 (11)
Cl2—O71.321 (10)C4—H4A0.970
Cl2—O81.364 (8)C4—H4B0.970
Cl2—O51.365 (7)C5—H5A0.970
Cl2—O61.381 (9)C5—H5B0.970
N1—C31.496 (8)C6—C71.504 (11)
N1—C41.502 (8)C6—H6A0.970
N1—H1AN0.910C6—H6B0.970
N2—C61.484 (8)C7—C81.499 (10)
N2—C51.488 (8)C7—H7A0.970
N2—H1N20.910C7—H7B0.970
N3—C81.488 (8)C8—H8A0.970
N3—H3AN0.900C8—H8B0.970
N3—H3BN0.900O1W—H1OA0.86 (6)
N4—C11.487 (7)O1W—H1OB0.74 (6)
N4—H4AN0.900
F—Cr—O1W179.49 (16)N4—C1—C2112.0 (5)
F—Cr—N189.72 (16)N4—C1—H1A109.2
O1W—Cr—N190.30 (18)C2—C1—H1A109.2
F—Cr—N288.63 (15)N4—C1—H1B109.2
O1W—Cr—N290.87 (17)C2—C1—H1B109.2
N1—Cr—N284.3 (2)H1A—C1—H1B107.9
F—Cr—N389.77 (16)C1—C2—C3114.3 (5)
O1W—Cr—N390.17 (18)C1—C2—H2A108.7
N1—Cr—N3176.23 (19)C3—C2—H2A108.7
N2—Cr—N391.9 (2)C1—C2—H2B108.7
F—Cr—N491.04 (15)C3—C2—H2B108.7
O1W—Cr—N489.47 (17)H2A—C2—H2B107.6
N1—Cr—N490.98 (19)N1—C3—C2112.4 (5)
N2—Cr—N4175.3 (2)N1—C3—H3A109.1
N3—Cr—N492.77 (19)C2—C3—H3A109.1
O4—Cl1—O3108.6 (11)N1—C3—H3B109.1
O4—Cl1—O2113.8 (8)C2—C3—H3B109.1
O3—Cl1—O2106.6 (9)H3A—C3—H3B107.9
O4—Cl1—O1119.5 (9)C5—C4—N1108.7 (5)
O3—Cl1—O197.5 (8)C5—C4—H4A109.9
O2—Cl1—O1108.9 (5)N1—C4—H4A109.9
O7—Cl2—O8104.5 (8)C5—C4—H4B109.9
O7—Cl2—O5114.7 (9)N1—C4—H4B109.9
O8—Cl2—O5112.8 (7)H4A—C4—H4B108.3
O7—Cl2—O6110.5 (10)N2—C5—C4107.8 (5)
O8—Cl2—O6110.7 (8)N2—C5—H5A110.1
O5—Cl2—O6103.7 (7)C4—C5—H5A110.1
C3—N1—C4111.9 (5)N2—C5—H5B110.1
C3—N1—Cr117.1 (4)C4—C5—H5B110.1
C4—N1—Cr107.0 (4)H5A—C5—H5B108.5
C3—N1—H1AN106.8N2—C6—C7112.8 (5)
C4—N1—H1AN106.8N2—C6—H6A109.0
Cr—N1—H1AN106.8C7—C6—H6A109.0
C6—N2—C5112.3 (5)N2—C6—H6B109.0
C6—N2—Cr119.7 (4)C7—C6—H6B109.0
C5—N2—Cr106.8 (4)H6A—C6—H6B107.8
C6—N2—H1N2105.7C8—C7—C6115.7 (6)
C5—N2—H1N2105.7C8—C7—H7A108.4
Cr—N2—H1N2105.7C6—C7—H7A108.4
C8—N3—Cr119.0 (4)C8—C7—H7B108.4
C8—N3—H3AN107.6C6—C7—H7B108.4
Cr—N3—H3AN107.6H7A—C7—H7B107.4
C8—N3—H3BN107.6N3—C8—C7112.7 (5)
Cr—N3—H3BN107.6N3—C8—H8A109.0
H3AN—N3—H3BN107.0C7—C8—H8A109.0
C1—N4—Cr116.9 (4)N3—C8—H8B109.0
C1—N4—H4AN108.1C7—C8—H8B109.0
Cr—N4—H4AN108.1H8A—C8—H8B107.8
C1—N4—H4BN108.1Cr—O1W—H1OA129 (5)
Cr—N4—H4BN108.1Cr—O1W—H1OB117 (5)
H4AN—N4—H4BN107.3H1OA—O1W—H1OB109 (6)
D—H···AD—HH···AD···AD—H···A
O1W—H1OA···Fi0.86 (6)1.72 (6)2.564 (5)168 (8)
O1W—H1OB···O2W0.74 (6)1.92 (6)2.617 (6)158 (7)
N1—H1AN···O2ii0.912.423.332 (11)177
N2—H1N2···O7iii0.912.453.154 (10)134
N3—H3BN···O50.902.363.242 (10)167
N4—H4BN···O50.902.433.062 (10)127
C1—H1B···O4iv0.972.533.141 (13)121
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1OA⋯Fi0.86 (6)1.72 (6)2.564 (5)168 (8)
O1W—H1OB⋯O2W0.74 (6)1.92 (6)2.617 (6)158 (7)
N1—H1AN⋯O2ii0.912.423.332 (11)177
N2—H1N2⋯O7iii0.912.453.154 (10)134
N3—H3BN⋯O50.902.363.242 (10)167
N4—H4BN⋯O50.902.433.062 (10)127
C1—H1B⋯O4iv0.972.533.141 (13)121

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  3 in total

1.  Structural and spectroscopic properties of trans-difluoro(1,4,8,12-tetraazacyclopentadecane)chromium(III) perchlorate hydrate.

Authors:  Jong-Ha Choi; In-Gyung Oh; Keon Sang Ryoo; Woo-Taik Lim; Yu Chul Park; Mohammad Hossein Habibi
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2006-06-08       Impact factor: 4.098

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Electronic and vibrational spectroscopy of cis-beta-[CrCl(2)(1,4,7,11-tetrazaundecane)chromium(III) perchlorate.

Authors:  Jong-Ha Choi; Sik Young Choi; Yong Pyo Hong; Seong-Oon Ko; Keon Sang Ryoo; Sang Hak Lee; Yu Chul Park
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2007-08-21       Impact factor: 4.098

  3 in total
  5 in total

1.  Crystal structure and conformational analysis of s-cis-(acetylacetonato)(ethylenediamine-N,N'-diacetato)-chromium(III): development of vibrationally optimized force field (VOFF).

Authors:  Jong-Ha Choi; Svetozar R Niketić; Ivana Djordjević; William Clegg; Ross W Harrington
Journal:  J Mol Model       Date:  2011-09-25       Impact factor: 1.810

2.  Crystal structure of cis-aqua-chlorido-(rac-5,5,7,12,12,14-hexa-methyl-1,4,8,11-tetra-aza-cyclo-tetra-decane-κ(4) N)chromium(III) tetra-chlorido-zincate trihydrate from synchrotron data.

Authors:  Dohyun Moon; Jong-Ha Choi
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-08-22

3.  Crystal structure of cis-aqua-chlorido-bis-(1,10-phenanthroline-κ(2) N,N')chromium(III) tetra-chlorido-zincate monohydrate from synchrotron data.

Authors:  Dohyun Moon; Jong-Ha Choi
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-02-21

4.  Crystal structure of cis-aqua-bis-(2,2'-bi-pyridine-κ(2) N,N')chlorido-chromium(III) tetra-chlorido-zincate determined from synchrotron data.

Authors:  Dohyun Moon; Keon Sang Ryoo; Jong-Ha Choi
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-02-03

5.  Crystal structure of trans-di-chlorido-(1,4,8,11-tetra-aza-undecane-κ(4) N)chromium(III) perchlorate determined from synchrotron data.

Authors:  Dohyun Moon; Jong-Ha Choi
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-02-24
  5 in total

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