Literature DB >> 21185770

Optimizing non-natural protein function with directed evolution.

Eric M Brustad1, Frances H Arnold.   

Abstract

Developing technologies such as unnatural amino acid mutagenesis, non-natural cofactor engineering, and computational design are generating proteins with novel functions; these proteins, however, often do not reach performance targets and would benefit from further optimization. Evolutionary methods can complement these approaches: recent work combining unnatural amino acid mutagenesis and phage selection has created useful proteins of novel composition. Weak initial activity in a computationally designed enzyme has been improved by iterative rounds of mutagenesis and screening. A marriage of ingenuity and evolution will expand the scope of protein function well beyond Mother Nature's designs.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 21185770      PMCID: PMC3080047          DOI: 10.1016/j.cbpa.2010.11.020

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  45 in total

1.  Tailoring the active site of chemzymes by using a chemogenetic-optimization procedure: towards substrate-specific artificial hydrogenases based on the biotin-avidin technology.

Authors:  Gérard Klein; Nicolas Humbert; Julieta Gradinaru; Anita Ivanova; François Gilardoni; Untung E Rusbandi; Thomas R Ward
Journal:  Angew Chem Int Ed Engl       Date:  2005-12-02       Impact factor: 15.336

2.  A network of orthogonal ribosome x mRNA pairs.

Authors:  Oliver Rackham; Jason W Chin
Journal:  Nat Chem Biol       Date:  2005-07-17       Impact factor: 15.040

3.  Designed evolution of artificial metalloenzymes: protein catalysts made to order.

Authors:  Marc Creus; Thomas R Ward
Journal:  Org Biomol Chem       Date:  2007-04-27       Impact factor: 3.876

4.  Kemp elimination catalysts by computational enzyme design.

Authors:  Daniela Röthlisberger; Olga Khersonsky; Andrew M Wollacott; Lin Jiang; Jason DeChancie; Jamie Betker; Jasmine L Gallaher; Eric A Althoff; Alexandre Zanghellini; Orly Dym; Shira Albeck; Kendall N Houk; Dan S Tawfik; David Baker
Journal:  Nature       Date:  2008-03-19       Impact factor: 49.962

5.  Evolution of a fluorinated green fluorescent protein.

Authors:  Tae Hyeon Yoo; A James Link; David A Tirrell
Journal:  Proc Natl Acad Sci U S A       Date:  2007-08-23       Impact factor: 11.205

6.  X-ray structure and designed evolution of an artificial transfer hydrogenase.

Authors:  Marc Creus; Anca Pordea; Thibaud Rossel; Alessia Sardo; Christophe Letondor; Anita Ivanova; Isolde Letrong; Ronald E Stenkamp; Thomas R Ward
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

7.  Artificial metalloenzymes for asymmetric allylic alkylation on the basis of the biotin-avidin technology.

Authors:  Julien Pierron; Christophe Malan; Marc Creus; Julieta Gradinaru; Ines Hafner; Anita Ivanova; Alessia Sardo; Thomas R Ward
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

8.  An Escherichia coli expression-based method for heme substitution.

Authors:  Joshua J Woodward; Nathaniel I Martin; Michael A Marletta
Journal:  Nat Methods       Date:  2006-12-24       Impact factor: 28.547

9.  Immunochemical termination of self-tolerance.

Authors:  Jan Grünewald; Meng-Lin Tsao; Roshan Perera; Liqun Dong; Frank Niessen; Ben G Wen; Diane M Kubitz; Vaughn V Smider; Wolfram Ruf; Marc Nasoff; Richard A Lerner; Peter G Schultz
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-06       Impact factor: 11.205

10.  Evolved orthogonal ribosomes enhance the efficiency of synthetic genetic code expansion.

Authors:  Kaihang Wang; Heinz Neumann; Sew Y Peak-Chew; Jason W Chin
Journal:  Nat Biotechnol       Date:  2007-06-24       Impact factor: 54.908

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  56 in total

Review 1.  Protein-Engineered Functional Materials.

Authors:  Yao Wang; Priya Katyal; Jin Kim Montclare
Journal:  Adv Healthc Mater       Date:  2019-04-02       Impact factor: 9.933

Review 2.  Biocatalyst development by directed evolution.

Authors:  Meng Wang; Tong Si; Huimin Zhao
Journal:  Bioresour Technol       Date:  2012-01-21       Impact factor: 9.642

3.  Protein engineering: Chemistry gets the assist.

Authors:  Bettina M Nestl; Bernhard Hauer
Journal:  Nat Chem Biol       Date:  2013-06-23       Impact factor: 15.040

4.  Elementary tetrahelical protein design for diverse oxidoreductase functions.

Authors:  Tammer A Farid; Goutham Kodali; Lee A Solomon; Bruce R Lichtenstein; Molly M Sheehan; Bryan A Fry; Chris Bialas; Nathan M Ennist; Jessica A Siedlecki; Zhenyu Zhao; Matthew A Stetz; Kathleen G Valentine; J L Ross Anderson; A Joshua Wand; Bohdana M Discher; Christopher C Moser; P Leslie Dutton
Journal:  Nat Chem Biol       Date:  2013-10-13       Impact factor: 15.040

Review 5.  Bioengineered probes for molecular magnetic resonance imaging in the nervous system.

Authors:  Vivian Hsieh; Alan Jasanoff
Journal:  ACS Chem Neurosci       Date:  2012-07-11       Impact factor: 4.418

6.  Thirty-degree shift in optimum temperature of a thermophilic lipase by a single-point mutation: effect of serine to threonine mutation on structural flexibility.

Authors:  Monika Sharma; Rakesh Kumar; Ranvir Singh; Jagdeep Kaur
Journal:  Mol Cell Biochem       Date:  2017-02-11       Impact factor: 3.396

7.  Covalent Anchor Positions Play an Important Role in Tuning Catalytic Properties of a Rationally Designed MnSalen-containing Metalloenzyme.

Authors:  Dewain K Garner; Lei Liang; David A Barrios; Jun-Long Zhang; Yi Lu
Journal:  ACS Catal       Date:  2011-09-02       Impact factor: 13.084

8.  Depletion of T cell epitopes in lysostaphin mitigates anti-drug antibody response and enhances antibacterial efficacy in vivo.

Authors:  Hongliang Zhao; Deeptak Verma; Wen Li; Yoonjoo Choi; Christian Ndong; Steven N Fiering; Chris Bailey-Kellogg; Karl E Griswold
Journal:  Chem Biol       Date:  2015-05-21

9.  Conformational plasticity surrounding the active site of NADH oxidase from Thermus thermophilus.

Authors:  Teresa Miletti; Justin Di Trani; Louis-Charles Levros; Anthony Mittermaier
Journal:  Protein Sci       Date:  2015-05-29       Impact factor: 6.725

Review 10.  Protein engineering for metabolic engineering: current and next-generation tools.

Authors:  Ryan J Marcheschi; Luisa S Gronenberg; James C Liao
Journal:  Biotechnol J       Date:  2013-04-16       Impact factor: 4.677

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