Literature DB >> 24121554

Elementary tetrahelical protein design for diverse oxidoreductase functions.

Tammer A Farid1, Goutham Kodali1, Lee A Solomon1, Bruce R Lichtenstein1,2, Molly M Sheehan1, Bryan A Fry1, Chris Bialas1, Nathan M Ennist1, Jessica A Siedlecki1, Zhenyu Zhao1, Matthew A Stetz1, Kathleen G Valentine1, J L Ross Anderson1,3, A Joshua Wand1, Bohdana M Discher1, Christopher C Moser1, P Leslie Dutton1.   

Abstract

Emulating functions of natural enzymes in man-made constructs has proven challenging. Here we describe a man-made protein platform that reproduces many of the diverse functions of natural oxidoreductases without importing the complex and obscure interactions common to natural proteins. Our design is founded on an elementary, structurally stable 4-α-helix protein monomer with a minimalist interior malleable enough to accommodate various light- and redox-active cofactors and with an exterior tolerating extensive charge patterning for modulation of redox cofactor potentials and environmental interactions. Despite its modest size, the construct offers several independent domains for functional engineering that targets diverse natural activities, including dioxygen binding and superoxide and peroxide generation, interprotein electron transfer to natural cytochrome c and light-activated intraprotein energy transfer and charge separation approximating the core reactions of photosynthesis, cryptochrome and photolyase. The highly stable, readily expressible and biocompatible characteristics of these open-ended designs promise development of practical in vitro and in vivo applications.

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Year:  2013        PMID: 24121554      PMCID: PMC4034760          DOI: 10.1038/nchembio.1362

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  49 in total

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2.  Directed evolution of the peroxidase activity of a de novo-designed protein.

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Journal:  Protein Eng Des Sel       Date:  2012-06-03       Impact factor: 1.650

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Review 4.  Helix capping.

Authors:  R Aurora; G D Rose
Journal:  Protein Sci       Date:  1998-01       Impact factor: 6.725

5.  Intraprotein radical transfer during photoactivation of DNA photolyase.

Authors:  C Aubert; M H Vos; P Mathis; A P Eker; K Brettel
Journal:  Nature       Date:  2000-06-01       Impact factor: 49.962

Review 6.  Guidelines for tunneling in enzymes.

Authors:  Christopher C Moser; J L Ross Anderson; P Leslie Dutton
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7.  Computational design and elaboration of a de novo heterotetrameric alpha-helical protein that selectively binds an emissive abiological (porphinato)zinc chromophore.

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Journal:  J Am Chem Soc       Date:  2010-03-24       Impact factor: 15.419

8.  Functionalized de novo designed proteins: mechanism of proton coupling to oxidation/reduction in heme protein maquettes.

Authors:  J M Shifman; C C Moser; W A Kalsbeck; D F Bocian; P L Dutton
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9.  Relationship between mitochondrial superoxide and hydrogen peroxide production and longevity of mammalian species.

Authors:  H H Ku; U T Brunk; R S Sohal
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10.  Design and engineering of an O(2) transport protein.

Authors:  Ronald L Koder; J L Ross Anderson; Lee A Solomon; Konda S Reddy; Christopher C Moser; P Leslie Dutton
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  50 in total

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Authors:  G S Schlau-Cohen
Journal:  Interface Focus       Date:  2015-06-06       Impact factor: 3.906

2.  Change in structure and ligand binding properties of hyperstable cytochrome c555 from Aquifex aeolicus by domain swapping.

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3.  Redesign of a Copper Storage Protein into an Artificial Hydrogenase.

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4.  Multi-step excitation energy transfer engineered in genetic fusions of natural and synthetic light-harvesting proteins.

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5.  De Novo Design, Solution Characterization, and Crystallographic Structure of an Abiological Mn-Porphyrin-Binding Protein Capable of Stabilizing a Mn(V) Species.

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Review 6.  Metalloproteins containing cytochrome, iron-sulfur, or copper redox centers.

Authors:  Jing Liu; Saumen Chakraborty; Parisa Hosseinzadeh; Yang Yu; Shiliang Tian; Igor Petrik; Ambika Bhagi; Yi Lu
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7.  Histidine-Lysine Axial Ligand Switching in a Hemoglobin: A Role for Heme Propionates.

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8.  De Novo Construction of Redox Active Proteins.

Authors:  C C Moser; M M Sheehan; N M Ennist; G Kodali; C Bialas; M T Englander; B M Discher; P L Dutton
Journal:  Methods Enzymol       Date:  2016-07-11       Impact factor: 1.600

9.  De novo design of a hyperstable non-natural protein-ligand complex with sub-Å accuracy.

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10.  Fast, cheap and out of control--Insights into thermodynamic and informatic constraints on natural protein sequences from de novo protein design.

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Journal:  Biochim Biophys Acta       Date:  2015-10-20
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