Literature DB >> 21179169

Transcriptional activation of polycomb-repressed genes by ZRF1.

Holger Richly1, Luciana Rocha-Viegas, Joana Domingues Ribeiro, Santiago Demajo, Gunes Gundem, Nuria Lopez-Bigas, Tekeya Nakagawa, Sabine Rospert, Takashi Ito, Luciano Di Croce.   

Abstract

Covalent modification of histones is fundamental in orchestrating chromatin dynamics and transcription. One example of such an epigenetic mark is the mono-ubiquitination of histones, which mainly occurs at histone H2A and H2B. Ubiquitination of histone H2A has been implicated in polycomb-mediated transcriptional silencing. However, the precise role of the ubiquitin mark during silencing is still elusive. Here we show in human cell lines that ZRF1 (zuotin-related factor 1) is specifically recruited to histone H2A when it is ubiquitinated at Lys 119 by means of a novel ubiquitin-interacting domain that is located in the evolutionarily conserved zuotin domain. At the onset of differentiation, ZRF1 specifically displaces polycomb-repressive complex 1 (PRC1) from chromatin and facilitates transcriptional activation. A genome-wide mapping of ZRF1, RING1B and H2A-ubiquitin targets revealed its involvement in the regulation of a large set of polycomb target genes, emphasizing the key role ZRF1 has in cell fate decisions. We provide here a model of the molecular mechanism of switching polycomb-repressed genes to an active state.

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Year:  2010        PMID: 21179169     DOI: 10.1038/nature09574

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  33 in total

1.  The language of covalent histone modifications.

Authors:  B D Strahl; C D Allis
Journal:  Nature       Date:  2000-01-06       Impact factor: 49.962

2.  Polycomb complexes repress developmental regulators in murine embryonic stem cells.

Authors:  Laurie A Boyer; Kathrin Plath; Julia Zeitlinger; Tobias Brambrink; Lea A Medeiros; Tong Ihn Lee; Stuart S Levine; Marius Wernig; Adriana Tajonar; Mridula K Ray; George W Bell; Arie P Otte; Miguel Vidal; David K Gifford; Richard A Young; Rudolf Jaenisch
Journal:  Nature       Date:  2006-04-19       Impact factor: 49.962

3.  Monoubiquitination of human histone H2B: the factors involved and their roles in HOX gene regulation.

Authors:  Bing Zhu; Yong Zheng; Anh-Dung Pham; Subhrangsu S Mandal; Hediye Erdjument-Bromage; Paul Tempst; Danny Reinberg
Journal:  Mol Cell       Date:  2005-11-23       Impact factor: 17.970

4.  The chaperones MPP11 and Hsp70L1 form the mammalian ribosome-associated complex.

Authors:  Hendrik Otto; Charlotte Conz; Philipp Maier; Tina Wölfle; Carolyn K Suzuki; Paul Jenö; Peter Rücknagel; Joachim Stahl; Sabine Rospert
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-07       Impact factor: 11.205

5.  Histone methyltransferase activity associated with a human multiprotein complex containing the Enhancer of Zeste protein.

Authors:  Andrei Kuzmichev; Kenichi Nishioka; Hediye Erdjument-Bromage; Paul Tempst; Danny Reinberg
Journal:  Genes Dev       Date:  2002-11-15       Impact factor: 11.361

6.  Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei.

Authors:  J D Dignam; R M Lebovitz; R G Roeder
Journal:  Nucleic Acids Res       Date:  1983-03-11       Impact factor: 16.971

7.  Retinoic acid induces neuronal differentiation of a cloned human embryonal carcinoma cell line in vitro.

Authors:  P W Andrews
Journal:  Dev Biol       Date:  1984-06       Impact factor: 3.582

8.  Pluripotent embryonal carcinoma clones derived from the human teratocarcinoma cell line Tera-2. Differentiation in vivo and in vitro.

Authors:  P W Andrews; I Damjanov; D Simon; G S Banting; C Carlin; N C Dracopoli; J Føgh
Journal:  Lab Invest       Date:  1984-02       Impact factor: 5.662

9.  A DNA integrity network in the yeast Saccharomyces cerevisiae.

Authors:  Xuewen Pan; Ping Ye; Daniel S Yuan; Xiaoling Wang; Joel S Bader; Jef D Boeke
Journal:  Cell       Date:  2006-02-16       Impact factor: 41.582

10.  Chipper: discovering transcription-factor targets from chromatin immunoprecipitation microarrays using variance stabilization.

Authors:  Francis D Gibbons; Markus Proft; Kevin Struhl; Frederick P Roth
Journal:  Genome Biol       Date:  2005-11-01       Impact factor: 13.583

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  69 in total

Review 1.  Shaping the landscape: mechanistic consequences of ubiquitin modification of chromatin.

Authors:  Sigurd Braun; Hiten D Madhani
Journal:  EMBO Rep       Date:  2012-06-29       Impact factor: 8.807

2.  Release factor eRF3 mediates premature translation termination on polylysine-stalled ribosomes in Saccharomyces cerevisiae.

Authors:  Marco Chiabudini; Arlette Tais; Ying Zhang; Sachiko Hayashi; Tina Wölfle; Edith Fitzke; Sabine Rospert
Journal:  Mol Cell Biol       Date:  2014-08-25       Impact factor: 4.272

Review 3.  ZRF1: a novel epigenetic regulator of stem cell identity and cancer.

Authors:  Luigi Aloia; Santiago Demajo; Luciano Di Croce
Journal:  Cell Cycle       Date:  2015       Impact factor: 4.534

4.  Histone monoubiquitylation position determines specificity and direction of enzymatic cross-talk with histone methyltransferases Dot1L and PRC2.

Authors:  Sarah J Whitcomb; Beat Fierz; Robert K McGinty; Matthew Holt; Takashi Ito; Tom W Muir; C David Allis
Journal:  J Biol Chem       Date:  2012-05-22       Impact factor: 5.157

Review 5.  Transcriptional regulation by Polycomb group proteins.

Authors:  Luciano Di Croce; Kristian Helin
Journal:  Nat Struct Mol Biol       Date:  2013-10       Impact factor: 15.369

Review 6.  Functional conservation and divergence of J-domain-containing ZUO1/ZRF orthologs throughout evolution.

Authors:  Dong-Hong Chen; Yong Huang; Chunlin Liu; Ying Ruan; Wen-Hui Shen
Journal:  Planta       Date:  2014-06       Impact factor: 4.116

7.  ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.

Authors:  Jing Feng; Donghong Chen; Alexandre Berr; Wen-Hui Shen
Journal:  Plant Physiol       Date:  2016-09-14       Impact factor: 8.340

8.  BMI1-RING1B is an autoinhibited RING E3 ubiquitin ligase.

Authors:  Asad M Taherbhoy; Oscar W Huang; Andrea G Cochran
Journal:  Nat Commun       Date:  2015-07-07       Impact factor: 14.919

Review 9.  Pluripotency and Epigenetic Factors in Mouse Embryonic Stem Cell Fate Regulation.

Authors:  Lluis Morey; Alexandra Santanach; Luciano Di Croce
Journal:  Mol Cell Biol       Date:  2015-06-01       Impact factor: 4.272

10.  Unfolding of the C-terminal domain of the J-protein Zuo1 releases autoinhibition and activates Pdr1-dependent transcription.

Authors:  Jeanette K Ducett; Francis C Peterson; Lindsey A Hoover; Amy J Prunuske; Brian F Volkman; Elizabeth A Craig
Journal:  J Mol Biol       Date:  2012-10-02       Impact factor: 5.469

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