Literature DB >> 22688965

Shaping the landscape: mechanistic consequences of ubiquitin modification of chromatin.

Sigurd Braun1, Hiten D Madhani.   

Abstract

The organization of eukaryotic chromosomes into transcriptionally active euchromatin and repressed heterochromatin requires mechanisms that establish, maintain and distinguish these canonical chromatin domains. Post-translational modifications are fundamental in these processes. Monoubiquitylation of histones was discovered more than three decades ago, but its precise function has been enigmatic until recently. It is now appreciated that the spectrum of chromatin ubiquitylation is not restricted to monoubiquitylation of histones, but includes degradatory ubiquitylation of histones, histone-modifying enzymes and non-histone chromatin factors. These occur in a spatially and temporally controlled manner. In this review, we summarize our understanding of these mechanisms with a particular emphasis on how ubiquitylation shapes the physical landscape of chromatin.

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Year:  2012        PMID: 22688965      PMCID: PMC3388787          DOI: 10.1038/embor.2012.78

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  85 in total

1.  Genome-wide function of H2B ubiquitylation in promoter and genic regions.

Authors:  Kiran Batta; Zhenhai Zhang; Kuangyu Yen; David B Goffman; B Franklin Pugh
Journal:  Genes Dev       Date:  2011-11-01       Impact factor: 11.361

Review 2.  Mechanism of CRL4(Cdt2), a PCNA-dependent E3 ubiquitin ligase.

Authors:  Courtney G Havens; Johannes C Walter
Journal:  Genes Dev       Date:  2011-08-01       Impact factor: 11.361

Review 3.  Gene expression control by protein deubiquitinases.

Authors:  Lori Frappier; C Peter Verrijzer
Journal:  Curr Opin Genet Dev       Date:  2011-03-14       Impact factor: 5.578

4.  The RING finger protein MSL2 in the MOF complex is an E3 ubiquitin ligase for H2B K34 and is involved in crosstalk with H3 K4 and K79 methylation.

Authors:  Lipeng Wu; Barry M Zee; Yanming Wang; Benjamin A Garcia; Yali Dou
Journal:  Mol Cell       Date:  2011-07-08       Impact factor: 17.970

5.  Rad6-dependent ubiquitination of histone H2B in yeast.

Authors:  K Robzyk; J Recht; M A Osley
Journal:  Science       Date:  2000-01-21       Impact factor: 47.728

6.  The F box protein partner of paired regulates stability of Drosophila centromeric histone H3, CenH3(CID).

Authors:  Olga Moreno-Moreno; Sònia Medina-Giró; Mònica Torras-Llort; Fernando Azorín
Journal:  Curr Biol       Date:  2011-08-25       Impact factor: 10.834

7.  RNF20 inhibits TFIIS-facilitated transcriptional elongation to suppress pro-oncogenic gene expression.

Authors:  Efrat Shema; Jaehoon Kim; Robert G Roeder; Moshe Oren
Journal:  Mol Cell       Date:  2011-05-20       Impact factor: 17.970

Review 8.  Structural regulation of cullin-RING ubiquitin ligase complexes.

Authors:  David M Duda; Daniel C Scott; Matthew F Calabrese; Erik S Zimmerman; Ning Zheng; Brenda A Schulman
Journal:  Curr Opin Struct Biol       Date:  2011-02-01       Impact factor: 6.809

9.  BRCA1 tumour suppression occurs via heterochromatin-mediated silencing.

Authors:  Quan Zhu; Gerald M Pao; Alexis M Huynh; Hoonkyo Suh; Nina Tonnu; Petra M Nederlof; Fred H Gage; Inder M Verma
Journal:  Nature       Date:  2011-09-07       Impact factor: 49.962

10.  The SKP1-Cul1-F-box and leucine-rich repeat protein 4 (SCF-FbxL4) ubiquitin ligase regulates lysine demethylase 4A (KDM4A)/Jumonji domain-containing 2A (JMJD2A) protein.

Authors:  Capucine Van Rechem; Joshua C Black; Tarek Abbas; Andrew Allen; Claire A Rinehart; Guo-Cheng Yuan; Anindya Dutta; Johnathan R Whetstine
Journal:  J Biol Chem       Date:  2011-07-08       Impact factor: 5.157

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  24 in total

1.  Ubiquitin acetylation inhibits polyubiquitin chain elongation.

Authors:  Fumiaki Ohtake; Yasushi Saeki; Kensaku Sakamoto; Kazumasa Ohtake; Hiroyuki Nishikawa; Hikaru Tsuchiya; Tomohiko Ohta; Keiji Tanaka; Jun Kanno
Journal:  EMBO Rep       Date:  2014-12-19       Impact factor: 8.807

2.  The ZFP-1(AF10)/DOT-1 complex opposes H2B ubiquitination to reduce Pol II transcription.

Authors:  Germano Cecere; Sebastian Hoersch; Morten B Jensen; Shiv Dixit; Alla Grishok
Journal:  Mol Cell       Date:  2013-06-27       Impact factor: 17.970

3.  Escape from Mitotic Arrest: An Unexpected Connection Between Microtubule Dynamics and Epigenetic Regulation of Centromeric Chromatin in Schizosaccharomyces pombe.

Authors:  Anuja A George; Nancy C Walworth
Journal:  Genetics       Date:  2015-10-28       Impact factor: 4.562

4.  Flexibility in crosstalk between H2B ubiquitination and H3 methylation in vivo.

Authors:  Hanneke Vlaming; Tibor van Welsem; Erik L de Graaf; David Ontoso; A F Maarten Altelaar; Pedro A San-Segundo; Albert J R Heck; Fred van Leeuwen
Journal:  EMBO Rep       Date:  2014-08-20       Impact factor: 8.807

5.  Histone H2B Monoubiquitination Mediated by HISTONE MONOUBIQUITINATION1 and HISTONE MONOUBIQUITINATION2 Is Involved in Anther Development by Regulating Tapetum Degradation-Related Genes in Rice.

Authors:  Hong Cao; Xiaoying Li; Zhi Wang; Meng Ding; Yongzhen Sun; Fengqin Dong; Fengying Chen; Li'an Liu; James Doughty; Yong Li; Yong-Xiu Liu
Journal:  Plant Physiol       Date:  2015-07-04       Impact factor: 8.340

6.  Ubiquitin chromatin remodelling after DNA damage is associated with the expression of key cancer genes and pathways.

Authors:  Alexander J Cole; Kristie-Ann Dickson; Christopher Liddle; Clare Stirzaker; Jaynish S Shah; Roderick Clifton-Bligh; Deborah J Marsh
Journal:  Cell Mol Life Sci       Date:  2020-05-26       Impact factor: 9.261

7.  Monoubiquitination of histone H2B is intrinsic to the Bre1 RING domain-Rad6 interaction and augmented by a second Rad6-binding site on Bre1.

Authors:  Eleonora Turco; Laura D Gallego; Maren Schneider; Alwin Köhler
Journal:  J Biol Chem       Date:  2014-12-29       Impact factor: 5.157

8.  Drosophila COP9 signalosome subunit 7 interacts with multiple genomic loci to regulate development.

Authors:  Ruth Singer; Shimshi Atar; Osnat Atias; Efrat Oron; Daniel Segal; Joel A Hirsch; Tamir Tuller; Amir Orian; Daniel A Chamovitz
Journal:  Nucleic Acids Res       Date:  2014-08-08       Impact factor: 16.971

9.  H2A.Z.1 Monoubiquitylation Antagonizes BRD2 to Maintain Poised Chromatin in ESCs.

Authors:  Lauren E Surface; Paul A Fields; Vidya Subramanian; Russell Behmer; Namrata Udeshi; Sally E Peach; Steven A Carr; Jacob D Jaffe; Laurie A Boyer
Journal:  Cell Rep       Date:  2016-01-21       Impact factor: 9.423

10.  Epigenetic regulation of the ribosomal cistron seasonally modulates enrichment of H2A.Z and H2A.Zub in response to different environmental inputs in carp (Cyprinus carpio).

Authors:  Nicolas Guillermo Simonet; Mauricio Reyes; Gino Nardocci; Alfredo Molina; Marco Alvarez
Journal:  Epigenetics Chromatin       Date:  2013-07-17       Impact factor: 4.954

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