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Literature DB >> 21131489

Complete genome sequence of Streptococcus thermophilus strain ND03.

Zhihong Sun¹, Xia Chen, Jicheng Wang, Wenjing Zhao, Yuyu Shao, Lan Wu, Zhemin Zhou, Tiansong Sun, Lei Wang, He Meng, Heping Zhang, Wei Chen.

Abstract

Streptococcus thermophilus strain ND03 is a Chinese commercial dairy starter used for the manufacture of yogurt. It was isolated from naturally fermented yak milk in Qinghai, China. We present here the complete genome sequence of ND03 and compare it to three other published genomes of Streptococcus thermophilus strains.

Entities: Species

Mesh：

Substances：
DNA, Bacterial

Year: 2010 PMID： 21131489 PMCID： PMC3021231 DOI： 10.1128/JB.01374-10

Source DB: PubMed Journal: J Bacteriol ISSN： 0021-9193 Impact factor: 3.490

9 in total

1. Identification and characterization of the dominant lactic acid bacteria from kurut: the naturally fermented yak milk in Qinghai, China.

Authors: Zhihong Sun; Wenjun Liu; Wa Gao; Mei Yang; Jiachao Zhang; Lan Wu; Junguo Wang; Bilige Menghe; Tiansong Sun; Heping Zhang
Journal: J Gen Appl Microbiol Date: 2010-02 Impact factor: 1.452

2. Genome sequencing in microfabricated high-density picolitre reactors.

Authors: Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal: Nature Date: 2005-07-31 Impact factor: 49.962

3. Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12.

Authors: Thomas Ferenci; Zhemin Zhou; Thu Betteridge; Yan Ren; Yu Liu; Lu Feng; Peter R Reeves; Lei Wang
Journal: J Bacteriol Date: 2009-04-17 Impact factor: 3.490

4. Comparative genomics of the lactic acid bacteria.

Authors: K Makarova; A Slesarev; Y Wolf; A Sorokin; B Mirkin; E Koonin; A Pavlov; N Pavlova; V Karamychev; N Polouchine; V Shakhova; I Grigoriev; Y Lou; D Rohksar; S Lucas; K Huang; D M Goodstein; T Hawkins; V Plengvidhya; D Welker; J Hughes; Y Goh; A Benson; K Baldwin; J-H Lee; I Díaz-Muñiz; B Dosti; V Smeianov; W Wechter; R Barabote; G Lorca; E Altermann; R Barrangou; B Ganesan; Y Xie; H Rawsthorne; D Tamir; C Parker; F Breidt; J Broadbent; R Hutkins; D O'Sullivan; J Steele; G Unlu; M Saier; T Klaenhammer; P Richardson; S Kozyavkin; B Weimer; D Mills
Journal: Proc Natl Acad Sci U S A Date: 2006-10-09 Impact factor: 11.205

5. Organization of Escherichia coli O157 O antigen gene cluster and identification of its specific genes.

Authors: L Wang; P R Reeves
Journal: Infect Immun Date: 1998-08 Impact factor: 3.441

6. Fast and accurate short read alignment with Burrows-Wheeler transform.

Authors: Heng Li; Richard Durbin
Journal: Bioinformatics Date: 2009-05-18 Impact factor: 6.937

7. A recalibrated molecular clock and independent origins for the cholera pandemic clones.

Authors: Lu Feng; Peter R Reeves; Ruiting Lan; Yi Ren; Chunxu Gao; Zhemin Zhou; Yan Ren; Jiansong Cheng; Wei Wang; Jianmei Wang; Wubin Qian; Dan Li; Lei Wang
Journal: PLoS One Date: 2008-12-30 Impact factor: 3.240

8. Accurate whole human genome sequencing using reversible terminator chemistry.

Authors: David R Bentley; Shankar Balasubramanian; Harold P Swerdlow; Geoffrey P Smith; John Milton; Clive G Brown; Kevin P Hall; Dirk J Evers; Colin L Barnes; Helen R Bignell; Jonathan M Boutell; Jason Bryant; Richard J Carter; R Keira Cheetham; Anthony J Cox; Darren J Ellis; Michael R Flatbush; Niall A Gormley; Sean J Humphray; Leslie J Irving; Mirian S Karbelashvili; Scott M Kirk; Heng Li; Xiaohai Liu; Klaus S Maisinger; Lisa J Murray; Bojan Obradovic; Tobias Ost; Michael L Parkinson; Mark R Pratt; Isabelle M J Rasolonjatovo; Mark T Reed; Roberto Rigatti; Chiara Rodighiero; Mark T Ross; Andrea Sabot; Subramanian V Sankar; Aylwyn Scally; Gary P Schroth; Mark E Smith; Vincent P Smith; Anastassia Spiridou; Peta E Torrance; Svilen S Tzonev; Eric H Vermaas; Klaudia Walter; Xiaolin Wu; Lu Zhang; Mohammed D Alam; Carole Anastasi; Ify C Aniebo; David M D Bailey; Iain R Bancarz; Saibal Banerjee; Selena G Barbour; Primo A Baybayan; Vincent A Benoit; Kevin F Benson; Claire Bevis; Phillip J Black; Asha Boodhun; Joe S Brennan; John A Bridgham; Rob C Brown; Andrew A Brown; Dale H Buermann; Abass A Bundu; James C Burrows; Nigel P Carter; Nestor Castillo; Maria Chiara E Catenazzi; Simon Chang; R Neil Cooley; Natasha R Crake; Olubunmi O Dada; Konstantinos D Diakoumakos; Belen Dominguez-Fernandez; David J Earnshaw; Ugonna C Egbujor; David W Elmore; Sergey S Etchin; Mark R Ewan; Milan Fedurco; Louise J Fraser; Karin V Fuentes Fajardo; W Scott Furey; David George; Kimberley J Gietzen; Colin P Goddard; George S Golda; Philip A Granieri; David E Green; David L Gustafson; Nancy F Hansen; Kevin Harnish; Christian D Haudenschild; Narinder I Heyer; Matthew M Hims; Johnny T Ho; Adrian M Horgan; Katya Hoschler; Steve Hurwitz; Denis V Ivanov; Maria Q Johnson; Terena James; T A Huw Jones; Gyoung-Dong Kang; Tzvetana H Kerelska; Alan D Kersey; Irina Khrebtukova; Alex P Kindwall; Zoya Kingsbury; Paula I Kokko-Gonzales; Anil Kumar; Marc A Laurent; Cynthia T Lawley; Sarah E Lee; Xavier Lee; Arnold K Liao; Jennifer A Loch; Mitch Lok; Shujun Luo; Radhika M Mammen; John W Martin; Patrick G McCauley; Paul McNitt; Parul Mehta; Keith W Moon; Joe W Mullens; Taksina Newington; Zemin Ning; Bee Ling Ng; Sonia M Novo; Michael J O'Neill; Mark A Osborne; Andrew Osnowski; Omead Ostadan; Lambros L Paraschos; Lea Pickering; Andrew C Pike; Alger C Pike; D Chris Pinkard; Daniel P Pliskin; Joe Podhasky; Victor J Quijano; Come Raczy; Vicki H Rae; Stephen R Rawlings; Ana Chiva Rodriguez; Phyllida M Roe; John Rogers; Maria C Rogert Bacigalupo; Nikolai Romanov; Anthony Romieu; Rithy K Roth; Natalie J Rourke; Silke T Ruediger; Eli Rusman; Raquel M Sanches-Kuiper; Martin R Schenker; Josefina M Seoane; Richard J Shaw; Mitch K Shiver; Steven W Short; Ning L Sizto; Johannes P Sluis; Melanie A Smith; Jean Ernest Sohna Sohna; Eric J Spence; Kim Stevens; Neil Sutton; Lukasz Szajkowski; Carolyn L Tregidgo; Gerardo Turcatti; Stephanie Vandevondele; Yuli Verhovsky; Selene M Virk; Suzanne Wakelin; Gregory C Walcott; Jingwen Wang; Graham J Worsley; Juying Yan; Ling Yau; Mike Zuerlein; Jane Rogers; James C Mullikin; Matthew E Hurles; Nick J McCooke; John S West; Frank L Oaks; Peter L Lundberg; David Klenerman; Richard Durbin; Anthony J Smith
Journal: Nature Date: 2008-11-06 Impact factor: 49.962

9. Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus.

Authors: Alexander Bolotin; Benoît Quinquis; Pierre Renault; Alexei Sorokin; S Dusko Ehrlich; Saulius Kulakauskas; Alla Lapidus; Eugene Goltsman; Michael Mazur; Gordon D Pusch; Michael Fonstein; Ross Overbeek; Nikos Kyprides; Bénédicte Purnelle; Deborah Prozzi; Katrina Ngui; David Masuy; Frédéric Hancy; Sophie Burteau; Marc Boutry; Jean Delcour; André Goffeau; Pascal Hols
Journal: Nat Biotechnol Date: 2004-11-14 Impact factor: 54.908

9 in total

20 in total

1. Molecular analysis of the glutamate decarboxylase locus in Streptococcus thermophilus ST110.

Authors: G A Somkuti; J A Renye; D H Steinberg
Journal: J Ind Microbiol Biotechnol Date: 2012-03-17 Impact factor: 3.346

2. Cloning and Overexpression of the als, pflA, and adhB Genes in Streptococcus thermophilus and Their Effects on Metabolite Formation.

Authors: Ismail Akyol; Fatma Gul Ozcelik; Asuman Karakas-Sen; Emin Ozkose; Yekta Gezginc; M Sait Ekinci
Journal: Mol Biotechnol Date: 2015-10 Impact factor: 2.695

3. Novel Genus of Phages Infecting Streptococcus thermophilus: Genomic and Morphological Characterization.

Authors: Cécile Philippe; Sébastien Levesque; Moïra B Dion; Denise M Tremblay; Philippe Horvath; Natascha Lüth; Christian Cambillau; Charles Franz; Horst Neve; Christophe Fremaux; Knut J Heller; Sylvain Moineau
Journal: Appl Environ Microbiol Date: 2020-06-17 Impact factor: 4.792

4. The rgg0182 gene encodes a transcriptional regulator required for the full Streptococcus thermophilus LMG18311 thermal adaptation.

Authors: Romain Henry; Emmanuelle Bruneau; Rozenn Gardan; Stéphane Bertin; Betty Fleuchot; Bernard Decaris; Nathalie Leblond-Bourget
Journal: BMC Microbiol Date: 2011-10-07 Impact factor: 3.605

5. The fast milk acidifying phenotype of Streptococcus thermophilus can be acquired by natural transformation of the genomic island encoding the cell-envelope proteinase PrtS.

Authors: Damien Dandoy; Christophe Fremaux; Marie Henry de Frahan; Philippe Horvath; Patrick Boyaval; Pascal Hols; Laetitia Fontaine
Journal: Microb Cell Fact Date: 2011-08-30 Impact factor: 5.328