Literature DB >> 19376874

Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12.

Thomas Ferenci1, Zhemin Zhou, Thu Betteridge, Yan Ren, Yu Liu, Lu Feng, Peter R Reeves, Lei Wang.   

Abstract

The genome of an Escherichia coli MC4100 strain with a lambda placMu50 fusion revealed numerous regulatory differences from MG1655, including one that arose during laboratory storage. The 194 mutational differences between MC4100(MuLac) and other K-12 sequences were mostly allocated to specific lineages, indicating the considerable mutational divergence between K-12 strains.

Entities:  

Mesh:

Year:  2009        PMID: 19376874      PMCID: PMC2698400          DOI: 10.1128/JB.00118-09

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  34 in total

1.  Clonal adaptive radiation in a constant environment.

Authors:  Ram Maharjan; Shona Seeto; Lucinda Notley-McRobb; Thomas Ferenci
Journal:  Science       Date:  2006-07-06       Impact factor: 47.728

2.  The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse.

Authors:  Tim Durfee; Richard Nelson; Schuyler Baldwin; Guy Plunkett; Valerie Burland; Bob Mau; Joseph F Petrosino; Xiang Qin; Donna M Muzny; Mulu Ayele; Richard A Gibbs; Bálint Csörgo; György Pósfai; George M Weinstock; Frederick R Blattner
Journal:  J Bacteriol       Date:  2008-02-01       Impact factor: 3.490

3.  Expression of fnr is constrained by an upstream IS5 insertion in certain Escherichia coli K-12 strains.

Authors:  R Gary Sawers
Journal:  J Bacteriol       Date:  2005-04       Impact factor: 3.490

4.  The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates.

Authors:  David A Rasko; M J Rosovitz; Garry S A Myers; Emmanuel F Mongodin; W Florian Fricke; Pawel Gajer; Jonathan Crabtree; Mohammed Sebaihia; Nicholas R Thomson; Roy Chaudhuri; Ian R Henderson; Vanessa Sperandio; Jacques Ravel
Journal:  J Bacteriol       Date:  2008-08-01       Impact factor: 3.490

Review 5.  Bacterial physiology, regulation and mutational adaptation in a chemostat environment.

Authors:  Thomas Ferenci
Journal:  Adv Microb Physiol       Date:  2008       Impact factor: 3.517

6.  Strain variation in ppGpp concentration and RpoS levels in laboratory strains of Escherichia coli K-12.

Authors:  Beny Spira; Xuye Hu; Thomas Ferenci
Journal:  Microbiology (Reading)       Date:  2008-09       Impact factor: 2.777

7.  Sex and virulence in Escherichia coli: an evolutionary perspective.

Authors:  Thierry Wirth; Daniel Falush; Ruiting Lan; Frances Colles; Patience Mensa; Lothar H Wieler; Helge Karch; Peter R Reeves; Martin C J Maiden; Howard Ochman; Mark Achtman
Journal:  Mol Microbiol       Date:  2006-06       Impact factor: 3.501

8.  Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110.

Authors:  Koji Hayashi; Naoki Morooka; Yoshihiro Yamamoto; Katsutoshi Fujita; Katsumi Isono; Sunju Choi; Eiichi Ohtsubo; Tomoya Baba; Barry L Wanner; Hirotada Mori; Takashi Horiuchi
Journal:  Mol Syst Biol       Date:  2006-02-21       Impact factor: 11.429

9.  Protein abundance profiling of the Escherichia coli cytosol.

Authors:  Yasushi Ishihama; Thorsten Schmidt; Juri Rappsilber; Matthias Mann; F Ulrich Hartl; Michael J Kerner; Dmitrij Frishman
Journal:  BMC Genomics       Date:  2008-02-27       Impact factor: 3.969

10.  A recalibrated molecular clock and independent origins for the cholera pandemic clones.

Authors:  Lu Feng; Peter R Reeves; Ruiting Lan; Yi Ren; Chunxu Gao; Zhemin Zhou; Yan Ren; Jiansong Cheng; Wei Wang; Jianmei Wang; Wubin Qian; Dan Li; Lei Wang
Journal:  PLoS One       Date:  2008-12-30       Impact factor: 3.240

View more
  57 in total

1.  Complete genome sequence of the probiotic bacterium Lactobacillus casei LC2W.

Authors:  Chen Chen; Lianzhong Ai; Fangfang Zhou; Lei Wang; Hao Zhang; Wei Chen; Benheng Guo
Journal:  J Bacteriol       Date:  2011-04-22       Impact factor: 3.490

2.  Genomic identification of a novel mutation in hfq that provides multiple benefits in evolving glucose-limited populations of Escherichia coli.

Authors:  Ram Maharjan; Zhemin Zhou; Yan Ren; Yang Li; Joël Gaffé; Dominique Schneider; Christopher McKenzie; Peter R Reeves; Thomas Ferenci; Lei Wang
Journal:  J Bacteriol       Date:  2010-06-11       Impact factor: 3.490

3.  Complete genome sequence of probiotic Bifidobacterium animalis subsp. lactis strain V9.

Authors:  Zhihong Sun; Xia Chen; Jicheng Wang; Pengfei Gao; Zhemin Zhou; Yi Ren; Tiansong Sun; Lei Wang; He Meng; Wei Chen; Heping Zhang
Journal:  J Bacteriol       Date:  2010-05-28       Impact factor: 3.490

4.  Complete genome sequence of the probiotic Lactobacillus plantarum ST-III.

Authors:  Yinyu Wang; Chen Chen; Lianzhong Ai; Fangfang Zhou; Zhemin Zhou; Lei Wang; Hao Zhang; Wei Chen; Benheng Guo
Journal:  J Bacteriol       Date:  2010-10-29       Impact factor: 3.490

5.  Complete genome sequence of Paenibacillus polymyxa SC2, a strain of plant growth-promoting Rhizobacterium with broad-spectrum antimicrobial activity.

Authors:  Mingchao Ma; Cuicui Wang; Yanqin Ding; Li Li; Delong Shen; Xin Jiang; Dawei Guan; Fengming Cao; Huijun Chen; Ruihua Feng; Xuan Wang; Yifan Ge; Liangtong Yao; Xiaohui Bing; Xiaohong Yang; Jun Li; Binghai Du
Journal:  J Bacteriol       Date:  2010-10-29       Impact factor: 3.490

6.  Grasping at shadows: revealing the elusive nature of essential genes.

Authors:  Tarek Msadek
Journal:  J Bacteriol       Date:  2009-05-22       Impact factor: 3.490

7.  Genome sequence of Escherichia coli J53, a reference strain for genetic studies.

Authors:  Hana Yi; Yong-Joon Cho; Dongeun Yong; Jongsik Chun
Journal:  J Bacteriol       Date:  2012-07       Impact factor: 3.490

8.  Complete genome sequence of Lactobacillus delbrueckii subsp. bulgaricus strain ND02.

Authors:  Zhihong Sun; Xia Chen; Jicheng Wang; Wenjing Zhao; Yuyu Shao; Zhuang Guo; Xingchang Zhang; Zhemin Zhou; Tiansong Sun; Lei Wang; He Meng; Heping Zhang; Wei Chen
Journal:  J Bacteriol       Date:  2011-04-22       Impact factor: 3.490

9.  Complete genome sequence of Streptococcus thermophilus strain MN-ZLW-002.

Authors:  Xiaohong Kang; Nan Ling; Guoqing Sun; Qi Zhou; Lanwei Zhang; Qinghai Sheng
Journal:  J Bacteriol       Date:  2012-08       Impact factor: 3.490

10.  Derivation of Escherichia coli O157:H7 from its O55:H7 precursor.

Authors:  Zhemin Zhou; Xiaomin Li; Bin Liu; Lothar Beutin; Jianguo Xu; Yan Ren; Lu Feng; Ruiting Lan; Peter R Reeves; Lei Wang
Journal:  PLoS One       Date:  2010-01-14       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.