Literature DB >> 21116679

Fluctuation and response in biology.

Ben Lehner1, Kunihiko Kaneko.   

Abstract

In 1905, Albert Einstein proposed that the forces that cause the random Brownian motion of a particle also underlie the resistance to macroscopic motion when a force is applied. This insight, of a coupling between fluctuation (stochastic behavior) and responsiveness (non-stochastic behavior), founded an important branch of physics. Here we argue that his insight may also be relevant for understanding evolved biological systems, and we present a 'fluctuation-response relationship' for biology. The relationship is consistent with the idea that biological systems are similarly canalized to stochastic, environmental, and genetic perturbations. It is also supported by in silico evolution experiments, and by the observation that 'noisy' gene expression is often both more responsive and more 'evolvable'. More generally, we argue that in biology there is (and always has been) an important role for macroscopic theory that considers the general behavior of systems without concern for their intimate molecular details.

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Mesh:

Year:  2010        PMID: 21116679      PMCID: PMC3043249          DOI: 10.1007/s00018-010-0589-y

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  24 in total

1.  Gene networks capable of pattern formation: from induction to reaction-diffusion.

Authors:  I Salazar-Ciudad; J Garcia-Fernández; R V Solé
Journal:  J Theor Biol       Date:  2000-08-21       Impact factor: 2.691

2.  On the relation between fluctuation and response in biological systems.

Authors:  Katsuhiko Sato; Yoichiro Ito; Tetsuya Yomo; Kunihiko Kaneko
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-13       Impact factor: 11.205

3.  A genetic signature of interspecies variations in gene expression.

Authors:  Itay Tirosh; Adina Weinberger; Miri Carmi; Naama Barkai
Journal:  Nat Genet       Date:  2006-06-18       Impact factor: 38.330

4.  Hsp90 as a capacitor for morphological evolution.

Authors:  S L Rutherford; S Lindquist
Journal:  Nature       Date:  1998-11-26       Impact factor: 49.962

Review 5.  Evolvability.

Authors:  M Kirschner; J Gerhart
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-21       Impact factor: 11.205

6.  The logical analysis of continuous, non-linear biochemical control networks.

Authors:  L Glass; S A Kauffman
Journal:  J Theor Biol       Date:  1973-04       Impact factor: 2.691

7.  Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise.

Authors:  John R S Newman; Sina Ghaemmaghami; Jan Ihmels; David K Breslow; Matthew Noble; Joseph L DeRisi; Jonathan S Weissman
Journal:  Nature       Date:  2006-05-14       Impact factor: 49.962

8.  Systematic mapping of genetic interactions in Caenorhabditis elegans identifies common modifiers of diverse signaling pathways.

Authors:  Ben Lehner; Catriona Crombie; Julia Tischler; Angelo Fortunato; Andrew G Fraser
Journal:  Nat Genet       Date:  2006-07-16       Impact factor: 38.330

9.  Revealing modular organization in the yeast transcriptional network.

Authors:  Jan Ihmels; Gilgi Friedlander; Sven Bergmann; Ofer Sarig; Yaniv Ziv; Naama Barkai
Journal:  Nat Genet       Date:  2002-07-22       Impact factor: 38.330

10.  Hsp90 as a capacitor of phenotypic variation.

Authors:  Christine Queitsch; Todd A Sangster; Susan Lindquist
Journal:  Nature       Date:  2002-05-12       Impact factor: 49.962

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  15 in total

1.  Nonlinear response theory in chemical kinetics.

Authors:  Maksym Kryvohuz; Shaul Mukamel
Journal:  J Chem Phys       Date:  2014-01-21       Impact factor: 3.488

2.  Global relationships in fluctuation and response in adaptive evolution.

Authors:  Chikara Furusawa; Kunihiko Kaneko
Journal:  J R Soc Interface       Date:  2015-08-06       Impact factor: 4.118

3.  Expression noise facilitates the evolution of gene regulation.

Authors:  Luise Wolf; Olin K Silander; Erik van Nimwegen
Journal:  Elife       Date:  2015-06-17       Impact factor: 8.140

4.  Phenotypic Robustness of Epidermal Stem Cell Number in C. elegans Is Modulated by the Activity of the Conserved N-acetyltransferase nath-10/NAT10.

Authors:  Mark Hintze; Dimitris Katsanos; Vahid Shahrezaei; Michalis Barkoulas
Journal:  Front Cell Dev Biol       Date:  2021-05-18

5.  Optimizing mitochondrial maintenance in extended neuronal projections.

Authors:  Anamika Agrawal; Elena F Koslover
Journal:  PLoS Comput Biol       Date:  2021-06-09       Impact factor: 4.475

6.  Combinatorial effects of transposable elements on gene expression and phenotypic robustness in Drosophila melanogaster development.

Authors:  Alexa W Clemmons; Steven A Wasserman
Journal:  G3 (Bethesda)       Date:  2013-09-04       Impact factor: 3.154

7.  Coupling between noise and plasticity in E. coli.

Authors:  Gajinder Pal Singh
Journal:  G3 (Bethesda)       Date:  2013-12-09       Impact factor: 3.154

8.  Higher gene expression variability in the more aggressive subtype of chronic lymphocytic leukemia.

Authors:  Simone Ecker; Vera Pancaldi; Daniel Rico; Alfonso Valencia
Journal:  Genome Med       Date:  2015-01-28       Impact factor: 11.117

Review 9.  Relational Stability in the Expression of Normality, Variation, and Control of Thyroid Function.

Authors:  Rudolf Hoermann; John E M Midgley; Rolf Larisch; Johannes W Dietrich
Journal:  Front Endocrinol (Lausanne)       Date:  2016-11-07       Impact factor: 5.555

10.  Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types.

Authors:  Simone Ecker; Lu Chen; Vera Pancaldi; Frederik O Bagger; José María Fernández; Enrique Carrillo de Santa Pau; David Juan; Alice L Mann; Stephen Watt; Francesco Paolo Casale; Nikos Sidiropoulos; Nicolas Rapin; Angelika Merkel; Hendrik G Stunnenberg; Oliver Stegle; Mattia Frontini; Kate Downes; Tomi Pastinen; Taco W Kuijpers; Daniel Rico; Alfonso Valencia; Stephan Beck; Nicole Soranzo; Dirk S Paul
Journal:  Genome Biol       Date:  2017-01-26       Impact factor: 13.583

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