Literature DB >> 10931754

Gene networks capable of pattern formation: from induction to reaction-diffusion.

I Salazar-Ciudad1, J Garcia-Fernández, R V Solé.   

Abstract

One of the main aims of developmental biology is to understand how a single and apparently homogeneous egg cell achieves the intricate complexity of the adult. Here we present two models to explain the generation of developmental patterns through interactions at the gene level. One model considers direct-contact induction between cells while the other takes into account diffusion of hormones. We show that sets of cells involving identical gene networks and communicating through hormones spontaneously exhibit ordered patterns. We have characterized these patterns and the specific networks responsible for them. The models allow to (i) compare diffusion and direct-contact induction processes as mechanisms of pattern generation; (ii) identify the possible range of behaviour of real gene networks and (iii) suggest causal mechanisms to generate known patterns. The evolutionary implications are discussed. Copyright 2000 Academic Press.

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Year:  2000        PMID: 10931754     DOI: 10.1006/jtbi.2000.2092

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  31 in total

1.  A gene network model accounting for development and evolution of mammalian teeth.

Authors:  Isaac Salazar-Ciudad; Jukka Jernvall
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-04       Impact factor: 11.205

2.  Different cell fates from cell-cell interactions: core architectures of two-cell bistable networks.

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Journal:  Biophys J       Date:  2012-02-07       Impact factor: 4.033

Review 3.  A new paradigm for animal symmetry.

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4.  A generative bias towards average complexity in artificial cell lineages.

Authors:  Rolf Lohaus; Nicholas L Geard; Janet Wiles; Ricardo B R Azevedo
Journal:  Proc Biol Sci       Date:  2007-07-22       Impact factor: 5.349

5.  Evolution in biological and nonbiological systems under different mechanisms of generation and inheritance.

Authors:  Isaac Salazar-Ciudad
Journal:  Theory Biosci       Date:  2008-10-23       Impact factor: 1.919

6.  Mechanisms and constraints shaping the evolution of body plan segmentation.

Authors:  K H W J Ten Tusscher
Journal:  Eur Phys J E Soft Matter       Date:  2013-05-29       Impact factor: 1.890

Review 7.  Looking at the origin of phenotypic variation from pattern formation gene networks.

Authors:  Isaac Salazar-Ciudad
Journal:  J Biosci       Date:  2009-10       Impact factor: 1.826

8.  Relationship among phenotypic plasticity, phenotypic fluctuations, robustness, and evolvability; Waddington's legacy revisited under the spirit of Einstein.

Authors:  Kunihiko Kaneko
Journal:  J Biosci       Date:  2009-10       Impact factor: 1.826

9.  High-throughput mathematical analysis identifies Turing networks for patterning with equally diffusing signals.

Authors:  Luciano Marcon; Xavier Diego; James Sharpe; Patrick Müller
Journal:  Elife       Date:  2016-04-08       Impact factor: 8.140

10.  A gene regulatory network model for cell-fate determination during Arabidopsis thaliana flower development that is robust and recovers experimental gene expression profiles.

Authors:  Carlos Espinosa-Soto; Pablo Padilla-Longoria; Elena R Alvarez-Buylla
Journal:  Plant Cell       Date:  2004-10-14       Impact factor: 11.277

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