Literature DB >> 21113353

Informative Retesting.

Christopher R Bilder1, Joshua M Tebbs, Peng Chen.   

Abstract

In situations where individuals are screened for an infectious disease or other binary characteristic and where resources for testing are limited, group testing can offer substantial benefits. Group testing, where subjects are tested in groups (pools) initially, has been successfully applied to problems in blood bank screening, public health, drug discovery, genetics, and many other areas. In these applications, often the goal is to identify each individual as positive or negative using initial group tests and subsequent retests of individuals within positive groups. Many group testing identification procedures have been proposed; however, the vast majority of them fail to incorporate heterogeneity among the individuals being screened. In this paper, we present a new approach to identify positive individuals when covariate information is available on each. This covariate information is used to structure how retesting is implemented within positive groups; therefore, we call this new approach "informative retesting." We derive closed-form expressions and implementation algorithms for the probability mass functions for the number of tests needed to decode positive groups. These informative retesting procedures are illustrated through a number of examples and are applied to chlamydia and gonorrhea testing in Nebraska for the Infertility Prevention Project. Overall, our work shows compelling evidence that informative retesting can dramatically decrease the number of tests while providing accuracy similar to established non-informative retesting procedures.

Entities:  

Year:  2010        PMID: 21113353      PMCID: PMC2992444          DOI: 10.1198/jasa.2010.ap09231

Source DB:  PubMed          Journal:  J Am Stat Assoc        ISSN: 0162-1459            Impact factor:   5.033


  15 in total

1.  Regression models for disease prevalence with diagnostic tests on pools of serum samples.

Authors:  S Vansteelandt; E Goetghebeur; T Verstraeten
Journal:  Biometrics       Date:  2000-12       Impact factor: 2.571

2.  The efficiency of pooling in the detection of rare mutations.

Authors:  J L Gastwirth
Journal:  Am J Hum Genet       Date:  2000-10       Impact factor: 11.025

3.  Pooling urine samples for ligase chain reaction screening for genital Chlamydia trachomatis infection in asymptomatic women.

Authors:  K A Kacena; S B Quinn; M R Howell; G E Madico; T C Quinn; C A Gaydos
Journal:  J Clin Microbiol       Date:  1998-02       Impact factor: 5.948

4.  The use of a square array scheme in blood testing.

Authors:  R M Phatarfod; A Sudbury
Journal:  Stat Med       Date:  1994-11-30       Impact factor: 2.373

5.  Nucleic acid test screening of blood donors for orthopoxviruses can potentially prevent dispersion of viral agents in case of bioterrorism.

Authors:  Michael Schmidt; W Kurt Roth; Hermann Meyer; Erhard Seifried; Michael K Hourfar
Journal:  Transfusion       Date:  2005-03       Impact factor: 3.157

6.  Detection of HIV-1 and HCV infections among antibody-negative blood donors by nucleic acid-amplification testing.

Authors:  Susan L Stramer; Simone A Glynn; Steven H Kleinman; D Michael Strong; Sally Caglioti; David J Wright; Roger Y Dodd; Michael P Busch
Journal:  N Engl J Med       Date:  2004-08-19       Impact factor: 91.245

7.  Pooling of urine specimens allows accurate and cost-effective genetic detection of Chlamydia trachomatis in Lithuania and other low-resource countries.

Authors:  Rita Butylkina; Violeta Juseviciute; Giedre Kasparaviciene; Andrius Vagoras; Egidijus Pagirskas; Magnus Unemo; Marius Domeika
Journal:  Scand J Infect Dis       Date:  2007

8.  Bias, efficiency, and agreement for group-testing regression models.

Authors:  Christopher R Bilder; Joshua M Tebbs
Journal:  J Stat Comput Simul       Date:  2009-01-01       Impact factor: 1.424

9.  Pooling of urine samples for screening for Neisseria gonorrhoeae by ligase chain reaction: accuracy and application.

Authors:  K A Kacena; S B Quinn; S C Hartman; T C Quinn; C A Gaydos
Journal:  J Clin Microbiol       Date:  1998-12       Impact factor: 5.948

10.  Pooling samples: the key to sensitive, specific and cost-effective genetic diagnosis of Chlamydia trachomatis in low-resource countries.

Authors:  Elena Shipitsyna; Kira Shalepo; Alevtina Savicheva; Magnus Unemo; Marius Domeika
Journal:  Acta Derm Venereol       Date:  2007       Impact factor: 4.437

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  19 in total

1.  Group testing for case identification with correlated responses.

Authors:  Samuel D Lendle; Michael G Hudgens; Bahjat F Qaqish
Journal:  Biometrics       Date:  2011-09-27       Impact factor: 2.571

2.  Two-stage hierarchical group testing for multiple infections with application to the infertility prevention project.

Authors:  Joshua M Tebbs; Christopher S McMahan; Christopher R Bilder
Journal:  Biometrics       Date:  2013-10-04       Impact factor: 2.571

3.  Two-dimensional informative array testing.

Authors:  Christopher S McMahan; Joshua M Tebbs; Christopher R Bilder
Journal:  Biometrics       Date:  2011-12-29       Impact factor: 2.571

4.  Improved HIV-1 Viral Load Monitoring Capacity Using Pooled Testing With Marker-Assisted Deconvolution.

Authors:  Tao Liu; Joseph W Hogan; Michael J Daniels; Mia Coetzer; Yizhen Xu; Gerald Bove; Allison K DeLong; Lauren Ledingham; Millicent Orido; Lameck Diero; Rami Kantor
Journal:  J Acquir Immune Defic Syndr       Date:  2017-08-15       Impact factor: 3.731

5.  Informative Dorfman screening.

Authors:  Christopher S McMahan; Joshua M Tebbs; Christopher R Bilder
Journal:  Biometrics       Date:  2011-07-15       Impact factor: 2.571

6.  Prevalence estimation subject to misclassification: the mis-substitution bias and some remedies.

Authors:  Zhiwei Zhang; Chunling Liu; Sungduk Kim; Aiyi Liu
Journal:  Stat Med       Date:  2014-07-18       Impact factor: 2.373

7.  Bayesian inference for disease prevalence using negative binomial group testing.

Authors:  Nicholas A Pritchard; Joshua M Tebbs
Journal:  Biom J       Date:  2011-02       Impact factor: 2.207

8.  Regression analysis for multiple-disease group testing data.

Authors:  Boan Zhang; Christopher R Bilder; Joshua M Tebbs
Journal:  Stat Med       Date:  2013-05-23       Impact factor: 2.373

9.  Group testing in heterogeneous populations by using halving algorithms.

Authors:  Michael S Black; Christopher R Bilder; Joshua M Tebbs
Journal:  J R Stat Soc Ser C Appl Stat       Date:  2012-03-01       Impact factor: 1.864

10.  Group testing regression model estimation when case identification is a goal.

Authors:  Boan Zhang; Christopher R Bilder; Joshua M Tebbs
Journal:  Biom J       Date:  2013-02-08       Impact factor: 2.207

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