Literature DB >> 23401530

Positive and negative feedback loops in the p53 and mRNA 3' processing pathways.

Emral Devany1, Xiaokan Zhang, Ji Yeon Park, Bin Tian, Frida Esther Kleiman.   

Abstract

Although the p53 network has been intensively studied, genetic analyses long hinted at the existence of components that remained elusive. Recent studies have shown regulation of p53 at the mRNA level mediated via both the 5' and the 3' untranslated regions and affecting the stability and translation efficiency of the p53 mRNA. Here, we provide evidence of a feedback loop between p53 and the poly(A)-specific ribonuclease (PARN), in which PARN deadenylase keeps p53 levels low in nonstress conditions by destabilizing p53 mRNA, and the UV-induced increase in p53 activates PARN deadenylase, regulating gene expression during DNA damage response in a transactivation-independent manner. This model is innovative because it provides insights into p53 function and the mechanisms behind the regulation of mRNA 3' end processing in different cellular conditions.

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Year:  2013        PMID: 23401530      PMCID: PMC3587245          DOI: 10.1073/pnas.1212533110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  28 in total

Review 1.  Regulation of mRNA stability in mammalian cells.

Authors:  J Guhaniyogi; G Brewer
Journal:  Gene       Date:  2001-03-07       Impact factor: 3.688

Review 2.  Connections between 3'-end processing and DNA damage response.

Authors:  Murat A Cevher; Frida E Kleiman
Journal:  Wiley Interdiscip Rev RNA       Date:  2010-05-25       Impact factor: 9.957

Review 3.  Outcomes of p53 activation--spoilt for choice.

Authors:  Karen H Vousden
Journal:  J Cell Sci       Date:  2006-12-15       Impact factor: 5.285

4.  Studying RNA-protein interactions in vivo by RNA immunoprecipitation.

Authors:  Luke A Selth; Pierre Close; Jesper Q Svejstrup
Journal:  Methods Mol Biol       Date:  2011

5.  Localization of AU-rich element-containing mRNA in cytoplasmic granules containing exosome subunits.

Authors:  Wei-Jye Lin; Aaron Duffy; Ching-Yi Chen
Journal:  J Biol Chem       Date:  2007-04-30       Impact factor: 5.157

6.  Global changes in processing of mRNA 3' untranslated regions characterize clinically distinct cancer subtypes.

Authors:  Priyam Singh; Travis L Alley; Sarah M Wright; Sonya Kamdar; William Schott; Robert Y Wilpan; Kevin D Mills; Joel H Graber
Journal:  Cancer Res       Date:  2009-12-15       Impact factor: 12.701

7.  Tristetraprolin and its family members can promote the cell-free deadenylation of AU-rich element-containing mRNAs by poly(A) ribonuclease.

Authors:  Wi S Lai; Elizabeth A Kennington; Perry J Blackshear
Journal:  Mol Cell Biol       Date:  2003-06       Impact factor: 4.272

8.  A panel of isogenic human cancer cells suggests a therapeutic approach for cancers with inactivated p53.

Authors:  Surojit Sur; Raymond Pagliarini; Fred Bunz; Carlo Rago; Luis A Diaz; Kenneth W Kinzler; Bert Vogelstein; Nickolas Papadopoulos
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-18       Impact factor: 11.205

9.  Transactivation of miR-34a by p53 broadly influences gene expression and promotes apoptosis.

Authors:  Tsung-Cheng Chang; Erik A Wentzel; Oliver A Kent; Kalyani Ramachandran; Michael Mullendore; Kwang Hyuck Lee; Georg Feldmann; Munekazu Yamakuchi; Marcella Ferlito; Charles J Lowenstein; Dan E Arking; Michael A Beer; Anirban Maitra; Joshua T Mendell
Journal:  Mol Cell       Date:  2007-05-31       Impact factor: 17.970

10.  The PARN deadenylase targets a discrete set of mRNAs for decay and regulates cell motility in mouse myoblasts.

Authors:  Jerome E Lee; Ju Youn Lee; Jarrett Trembly; Jeffrey Wilusz; Bin Tian; Carol J Wilusz
Journal:  PLoS Genet       Date:  2012-08-30       Impact factor: 5.917

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  28 in total

1.  Nucleolin phosphorylation regulates PARN deadenylase activity during cellular stress response.

Authors:  Xiaokan Zhang; Shu Xiao; Rachele Dolce Rameau; Emral Devany; Zaineb Nadeem; Elif Caglar; Kenneth Ng; Frida Esther Kleiman; Anjana Saxena
Journal:  RNA Biol       Date:  2017-12-15       Impact factor: 4.652

2.  Poly(A)-specific ribonuclease deficiency impacts telomere biology and causes dyskeratosis congenita.

Authors:  Hemanth Tummala; Amanda Walne; Laura Collopy; Shirleny Cardoso; Josu de la Fuente; Sarah Lawson; James Powell; Nicola Cooper; Alison Foster; Shehla Mohammed; Vincent Plagnol; Thomas Vulliamy; Inderjeet Dokal
Journal:  J Clin Invest       Date:  2015-04-20       Impact factor: 14.808

3.  mRNA deadenylation and telomere disease.

Authors:  Philip J Mason; Monica Bessler
Journal:  J Clin Invest       Date:  2015-04-20       Impact factor: 14.808

4.  Regulation of poly(a)-specific ribonuclease activity by reversible lysine acetylation.

Authors:  Eden A Dejene; Yixuan Li; Zahra Showkatian; Hongbo Ling; Edward Seto
Journal:  J Biol Chem       Date:  2020-05-26       Impact factor: 5.157

5.  PAPD5-mediated 3' adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease.

Authors:  Joost Boele; Helena Persson; Jay W Shin; Yuri Ishizu; Inga S Newie; Rolf Søkilde; Shannon M Hawkins; Cristian Coarfa; Kazuhiro Ikeda; Ken-ichi Takayama; Kuniko Horie-Inoue; Yoshinari Ando; A Maxwell Burroughs; Chihiro Sasaki; Chizuru Suzuki; Mizuho Sakai; Shintaro Aoki; Ayumi Ogawa; Akira Hasegawa; Marina Lizio; Kaoru Kaida; Bas Teusink; Piero Carninci; Harukazu Suzuki; Satoshi Inoue; Preethi H Gunaratne; Carlos Rovira; Yoshihide Hayashizaki; Michiel J L de Hoon
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-21       Impact factor: 11.205

Review 6.  Post-transcriptional regulation of DNA damage-responsive gene expression.

Authors:  Bruce C McKay
Journal:  Antioxid Redox Signal       Date:  2013-09-12       Impact factor: 8.401

7.  Kleat: cleavage site analysis of transcriptomes.

Authors:  Inanç Birol; Anthony Raymond; Readman Chiu; Ka Ming Nip; Shaun D Jackman; Maayan Kreitzman; T Roderick Docking; Catherine A Ennis; A Gordon Robertson; Aly Karsan
Journal:  Pac Symp Biocomput       Date:  2015

Review 8.  How miRs and mRNA deadenylases could post-transcriptionally regulate expression of tumor-promoting protein PLD.

Authors:  Julian Gomez-Cambronero; Kristen Fite; Taylor E Miller
Journal:  Adv Biol Regul       Date:  2017-08-24

Review 9.  Connections between 3' end processing and DNA damage response: Ten years later.

Authors:  Michael Robert Murphy; Frida Esther Kleiman
Journal:  Wiley Interdiscip Rev RNA       Date:  2019-10-28       Impact factor: 9.957

10.  The RNase PARN Controls the Levels of Specific miRNAs that Contribute to p53 Regulation.

Authors:  Siddharth Shukla; Glen A Bjerke; Denise Muhlrad; Rui Yi; Roy Parker
Journal:  Mol Cell       Date:  2019-02-12       Impact factor: 17.970

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