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Literature DB >> 21057016

Metagenomic analysis reveals unexpected subgenomic diversity of magnetotactic bacteria within the phylum Nitrospirae.

Wei Lin¹, Christian Jogler, Dirk Schüler, Yongxin Pan.

Abstract

A targeted metagenomic approach was applied to investigate magnetotactic bacteria (MTB) within the phylum Nitrospirae in Lake Miyun near Beijing, China. Five fosmids containing rRNA operons were identified. Comparative sequence analysis of a total of 172 kb provided new insights into their genome organization and revealed unexpected subgenomic diversity of uncultivated MTB in the phylum Nitrospirae. In addition, affiliation of two novel MTB with the phylum Nitrospirae was verified by fluorescence in situ hybridization. One of them was morphologically similar to "Candidatus Magnetobacterium bavaricum," but the other differed substantially in cell shape and magnetosome organization from all previously described "Ca. Magnetobacterium bavaricum"-like bacteria.

Entities: Species

Mesh：

Substances：
DNA, Bacterial

Year: 2010 PMID： 21057016 PMCID： PMC3019724 DOI： 10.1128/AEM.01476-10

Source DB: PubMed Journal: Appl Environ Microbiol ISSN： 0099-2240 Impact factor: 4.792

21 in total

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Authors: Achim Quaiser; Torsten Ochsenreiter; Christa Lanz; Stephan C Schuster; Alexander H Treusch; Jürgen Eck; Christa Schleper
Journal: Mol Microbiol Date: 2003-10 Impact factor: 3.501

2. Specific primers for the detection of freshwater alphaproteobacterial magnetotactic cocci.

Authors: Wei Lin; Yongxin Pan
Journal: Int Microbiol Date: 2009-12 Impact factor: 2.479

3. Observation of magnetoreceptive behavior in a multicellular magnetotactic prokaryote in higher than geomagnetic fields.

Authors: Michael Greenberg; Karl Canter; Inga Mahler; Adam Tornheim
Journal: Biophys J Date: 2004-11-19 Impact factor: 4.033

4. Combined approach for characterization of uncultivated magnetotactic bacteria from various aquatic environments.

Authors: Christine B Flies; Jörg Peplies; Dirk Schüler
Journal: Appl Environ Microbiol Date: 2005-05 Impact factor: 4.792

5. Diversity analysis of magnetotactic bacteria in Lake Miyun, northern China, by restriction fragment length polymorphism.

Authors: Wei Lin; Jinhua Li; Dirk Schüler; Christian Jogler; Yongxin Pan
Journal: Syst Appl Microbiol Date: 2009-01-24 Impact factor: 4.022

Review 6. Magnetotactic bacteria and magnetosomes.

Authors: Damien Faivre; Dirk Schüler
Journal: Chem Rev Date: 2008-10-15 Impact factor: 60.622

7. Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology.

Authors: R I Amann; L Krumholz; D A Stahl
Journal: J Bacteriol Date: 1990-02 Impact factor: 3.490

8. Cultivation-independent characterization of 'Candidatus Magnetobacterium bavaricum' via ultrastructural, geochemical, ecological and metagenomic methods.

Authors: C Jogler; M Niebler; W Lin; M Kube; G Wanner; S Kolinko; P Stief; A J Beck; D De Beer; N Petersen; Y Pan; R Amann; R Reinhardt; D Schüler
Journal: Environ Microbiol Date: 2010-04-19 Impact factor: 5.491

9. Molecular mechanism of energy conservation in polysulfide respiration.

Authors: Mika Jormakka; Ken Yokoyama; Takahiro Yano; Masatada Tamakoshi; Satoru Akimoto; Tatsuro Shimamura; Paul Curmi; So Iwata
Journal: Nat Struct Mol Biol Date: 2008-06-08 Impact factor: 15.369

10. Evolution of selenium utilization traits.

Authors: Héctor Romero; Yan Zhang; Vadim N Gladyshev; Gustavo Salinas
Journal: Genome Biol Date: 2005-07-27 Impact factor: 13.583

13 in total

Review 1. Ecology, diversity, and evolution of magnetotactic bacteria.

Authors: Christopher T Lefèvre; Dennis A Bazylinski
Journal: Microbiol Mol Biol Rev Date: 2013-09 Impact factor: 11.056

2. A biogeographic distribution of magnetotactic bacteria influenced by salinity.

Authors: Wei Lin; Yinzhao Wang; Bi Li; Yongxin Pan
Journal: ISME J Date: 2011-08-25 Impact factor: 10.302

3. Origin of microbial biomineralization and magnetotaxis during the Archean.

Authors: Wei Lin; Greig A Paterson; Qiyun Zhu; Yinzhao Wang; Evguenia Kopylova; Ying Li; Rob Knight; Dennis A Bazylinski; Rixiang Zhu; Joseph L Kirschvink; Yongxin Pan
Journal: Proc Natl Acad Sci U S A Date: 2017-02-13 Impact factor: 11.205

4. North-Seeking Magnetotactic Gammaproteobacteria in the Southern Hemisphere.

Authors: Pedro Leão; Lia C R S Teixeira; Jefferson Cypriano; Marcos Farina; Fernanda Abreu; Dennis A Bazylinski; Ulysses Lins
Journal: Appl Environ Microbiol Date: 2016-08-30 Impact factor: 4.792

5. Newly isolated but uncultivated magnetotactic bacterium of the phylum Nitrospirae from Beijing, China.

Authors: Wei Lin; Jinhua Li; Yongxin Pan
Journal: Appl Environ Microbiol Date: 2011-11-23 Impact factor: 4.792

6. Conservation of proteobacterial magnetosome genes and structures in an uncultivated member of the deep-branching Nitrospira phylum.

Authors: Christian Jogler; Gerhard Wanner; Sebastian Kolinko; Martina Niebler; Rudolf Amann; Nikolai Petersen; Michael Kube; Richard Reinhardt; Dirk Schüler
Journal: Proc Natl Acad Sci U S A Date: 2010-12-29 Impact factor: 11.205