Literature DB >> 28193877

Origin of microbial biomineralization and magnetotaxis during the Archean.

Wei Lin1,2, Greig A Paterson3, Qiyun Zhu4, Yinzhao Wang3,2, Evguenia Kopylova5, Ying Li6, Rob Knight5,7, Dennis A Bazylinski8, Rixiang Zhu9, Joseph L Kirschvink10,11, Yongxin Pan1,2.   

Abstract

Microbes that synthesize minerals, a process known as microbial biomineralization, contributed substantially to the evolution of current planetary environments through numerous important geochemical processes. Despite its geological significance, the origin and evolution of microbial biomineralization remain poorly understood. Through combined metagenomic and phylogenetic analyses of deep-branching magnetotactic bacteria from the Nitrospirae phylum, and using a Bayesian molecular clock-dating method, we show here that the gene cluster responsible for biomineralization of magnetosomes, and the arrangement of magnetosome chain(s) within cells, both originated before or near the Archean divergence between the Nitrospirae and Proteobacteria This phylogenetic divergence occurred well before the Great Oxygenation Event. Magnetotaxis likely evolved due to environmental pressures conferring an evolutionary advantage to navigation via the geomagnetic field. Earth's dynamo must therefore have been sufficiently strong to sustain microbial magnetotaxis in the Archean, suggesting that magnetotaxis coevolved with the geodynamo over geological time.

Keywords:  Archean; geodynamo; magnetotactic bacteria; magnetotaxis; microbial biomineralization

Mesh:

Substances:

Year:  2017        PMID: 28193877      PMCID: PMC5338559          DOI: 10.1073/pnas.1614654114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  53 in total

1.  Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.

Authors:  J Castresana
Journal:  Mol Biol Evol       Date:  2000-04       Impact factor: 16.240

2.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

3.  Codon usage methods for horizontal gene transfer detection generate an abundance of false positive and false negative results.

Authors:  Robert Friedman; Bert Ely
Journal:  Curr Microbiol       Date:  2012-08-15       Impact factor: 2.188

4.  Unusual biology across a group comprising more than 15% of domain Bacteria.

Authors:  Christopher T Brown; Laura A Hug; Brian C Thomas; Itai Sharon; Cindy J Castelle; Andrea Singh; Michael J Wilkins; Kelly C Wrighton; Kenneth H Williams; Jillian F Banfield
Journal:  Nature       Date:  2015-06-15       Impact factor: 49.962

5.  Single-cell genomics of uncultivated deep-branching magnetotactic bacteria reveals a conserved set of magnetosome genes.

Authors:  Sebastian Kolinko; Michael Richter; Frank-Oliver Glöckner; Andreas Brachmann; Dirk Schüler
Journal:  Environ Microbiol       Date:  2015-07-30       Impact factor: 5.491

6.  Crown group Oxyphotobacteria postdate the rise of oxygen.

Authors:  P M Shih; J Hemp; L M Ward; N J Matzke; W W Fischer
Journal:  Geobiology       Date:  2016-07-08       Impact factor: 4.407

7.  Conservation of proteobacterial magnetosome genes and structures in an uncultivated member of the deep-branching Nitrospira phylum.

Authors:  Christian Jogler; Gerhard Wanner; Sebastian Kolinko; Martina Niebler; Rudolf Amann; Nikolai Petersen; Michael Kube; Richard Reinhardt; Dirk Schüler
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-29       Impact factor: 11.205

8.  Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics.

Authors:  Paul N Evans; Donovan H Parks; Grayson L Chadwick; Steven J Robbins; Victoria J Orphan; Suzanne D Golding; Gene W Tyson
Journal:  Science       Date:  2015-10-23       Impact factor: 47.728

Review 9.  Magnetotactic bacteria from extreme environments.

Authors:  Dennis A Bazylinski; Christopher T Lefèvre
Journal:  Life (Basel)       Date:  2013-03-26

10.  The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).

Authors:  Ross Overbeek; Robert Olson; Gordon D Pusch; Gary J Olsen; James J Davis; Terry Disz; Robert A Edwards; Svetlana Gerdes; Bruce Parrello; Maulik Shukla; Veronika Vonstein; Alice R Wattam; Fangfang Xia; Rick Stevens
Journal:  Nucleic Acids Res       Date:  2013-11-29       Impact factor: 16.971

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  26 in total

1.  Origin of magnetotaxis: Vertical inheritance or horizontal transfer?

Authors:  Sishuo Wang; Youhua Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-12       Impact factor: 11.205

2.  Reply to Wang and Chen: An ancient origin of magnetotactic bacteria.

Authors:  Wei Lin; Greig A Paterson; Qiyun Zhu; Yinzhao Wang; Evguenia Kopylova; Ying Li; Rob Knight; Dennis A Bazylinski; Rixiang Zhu; Joseph L Kirschvink; Yongxin Pan
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-12       Impact factor: 11.205

Review 3.  A Compass To Boost Navigation: Cell Biology of Bacterial Magnetotaxis.

Authors:  Frank D Müller; Dirk Schüler; Daniel Pfeiffer
Journal:  J Bacteriol       Date:  2020-10-08       Impact factor: 3.490

4.  Single-cell determination of iron content in magnetotactic bacteria: implications for the iron biogeochemical cycle.

Authors:  Matthieu Amor; Mickaël Tharaud; Alexandre Gélabert; Arash Komeili
Journal:  Environ Microbiol       Date:  2019-06-30       Impact factor: 5.491

5.  Repeated horizontal gene transfers triggered parallel evolution of magnetotaxis in two evolutionary divergent lineages of magnetotactic bacteria.

Authors:  Caroline L Monteil; Denis S Grouzdev; Guy Perrière; Béatrice Alonso; Zoé Rouy; Stéphane Cruveiller; Nicolas Ginet; David Pignol; Christopher T Lefevre
Journal:  ISME J       Date:  2020-04-15       Impact factor: 10.302

Review 6.  Magnetotactic bacteria: concepts, conundrums, and insights from a novel in situ approach using digital holographic microscopy (DHM).

Authors:  Casey R Barr; Manuel Bedrossian; Kenneth J Lohmann; Kenneth H Nealson
Journal:  J Comp Physiol A Neuroethol Sens Neural Behav Physiol       Date:  2022-02-22       Impact factor: 1.836

7.  Metagenomic and Microscopic Analysis of Magnetotactic Bacteria in Tangyin Hydrothermal Field of Okinawa Trough.

Authors:  Si Chen; Min Yu; Wenyan Zhang; Kuang He; Hongmiao Pan; Kaixuan Cui; Yicong Zhao; Xiao-Hua Zhang; Tian Xiao; Wuchang Zhang; Long-Fei Wu
Journal:  Front Microbiol       Date:  2022-06-10       Impact factor: 6.064

8.  Intracellular silicification by early-branching magnetotactic bacteria.

Authors:  Jinhua Li; Peiyu Liu; Nicolas Menguy; Xingliang Zhang; Jian Wang; Karim Benzerara; Lianjun Feng; Lei Sun; Yue Zheng; Fanqi Meng; Lin Gu; Eric Leroy; Jialong Hao; Xuelei Chu; Yongxin Pan
Journal:  Sci Adv       Date:  2022-05-13       Impact factor: 14.957

9.  Rice Paddy Nitrospirae Carry and Express Genes Related to Sulfate Respiration: Proposal of the New Genus "Candidatus Sulfobium".

Authors:  Sarah Zecchin; Ralf C Mueller; Jana Seifert; Ulrich Stingl; Karthik Anantharaman; Martin von Bergen; Lucia Cavalca; Michael Pester
Journal:  Appl Environ Microbiol       Date:  2018-02-14       Impact factor: 4.792

10.  Enhancing reaction rate in a Pickering emulsion system with natural magnetotactic bacteria as nanoscale magnetic stirring bars.

Authors:  Xin Zhou; Changyou Chen; Changyan Cao; Tao Song; Hengquan Yang; Weiguo Song
Journal:  Chem Sci       Date:  2018-01-31       Impact factor: 9.825

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