Literature DB >> 21052779

GFT projection NMR spectroscopy for proteins in the solid state.

W Trent Franks1, Hanudatta S Atreya, Thomas Szyperski, Chad M Rienstra.   

Abstract

Recording of four-dimensional (4D) spectra for proteins in the solid state has opened new avenues to obtain virtually complete resonance assignments and three-dimensional (3D) structures of proteins. As in solution state NMR, the sampling of three indirect dimensions leads per se to long minimal measurement time. Furthermore, artifact suppression in solid state NMR relies primarily on radio-frequency pulse phase cycling. For an n-step phase cycle, the minimal measurement times of both 3D and 4D spectra are increased n times. To tackle the associated 'sampling problem' and to avoid sampling limited data acquisition, solid state G-Matrix Fourier Transform (SS GFT) projection NMR is introduced to rapidly acquire 3D and 4D spectral information. Specifically, (4,3)D (HA)CANCOCX and (3,2)D (HACA)NCOCX were implemented and recorded for the 6 kDa protein GB1 within about 10% of the time required for acquiring the conventional congeners with the same maximal evolution times and spectral widths in the indirect dimensions. Spectral analysis was complemented by comparative analysis of expected spectral congestion in conventional and GFT NMR experiments, demonstrating that high spectral resolution of the GFT NMR experiments enables one to efficiently obtain nearly complete resonance assignments even for large proteins.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 21052779      PMCID: PMC3058792          DOI: 10.1007/s10858-010-9451-7

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  45 in total

1.  Solid-state protein-structure determination with proton-detected triple-resonance 3D magic-angle-spinning NMR spectroscopy.

Authors:  Donghua H Zhou; John J Shea; Andrew J Nieuwkoop; W Trent Franks; Benjamin J Wylie; Charles Mullen; Dennis Sandoz; Chad M Rienstra
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

2.  GFT projection NMR based resonance assignment of membrane proteins: application to subunit C of E. coli F(1)F (0) ATP synthase in LPPG micelles.

Authors:  Qi Zhang; Hanudatta S Atreya; Douglas E Kamen; Mark E Girvin; Thomas Szyperski
Journal:  J Biomol NMR       Date:  2008-02-14       Impact factor: 2.835

3.  An improved broadband decoupling sequence for liquid crystals and solids.

Authors:  B M Fung; A K Khitrin; K Ermolaev
Journal:  J Magn Reson       Date:  2000-01       Impact factor: 2.229

4.  Partial NMR assignments for uniformly (13C, 15N)-enriched BPTI in the solid state.

Authors:  A McDermott; T Polenova; A Bockmann; K W Zilm; E K Paulson; R W Martin; G T Montelione; E K Paulsen
Journal:  J Biomol NMR       Date:  2000-03       Impact factor: 2.835

5.  Resonance assignment of 13C/15N labeled solid proteins by two- and three-dimensional magic-angle-spinning NMR.

Authors:  M Hong
Journal:  J Biomol NMR       Date:  1999-09       Impact factor: 2.835

6.  Assignment strategies for large proteins by magic-angle spinning NMR: the 21-kDa disulfide-bond-forming enzyme DsbA.

Authors:  Lindsay J Sperling; Deborah A Berthold; Terry L Sasser; Victoria Jeisy-Scott; Chad M Rienstra
Journal:  J Mol Biol       Date:  2010-04-13       Impact factor: 5.469

7.  Methods for sequential resonance assignment in solid, uniformly 13C, 15N labelled peptides: quantification and application to antamanide.

Authors:  A Detken; E H Hardy; M Ernst; M Kainosho; T Kawakami; S Aimoto; B H Meier
Journal:  J Biomol NMR       Date:  2001-07       Impact factor: 2.835

8.  Clean absorption-mode NMR data acquisition.

Authors:  Yibing Wu; Arindam Ghosh; Thomas Szyperski
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

9.  Dipole tensor-based atomic-resolution structure determination of a nanocrystalline protein by solid-state NMR.

Authors:  W Trent Franks; Benjamin J Wylie; Heather L Frericks Schmidt; Andrew J Nieuwkoop; Rebecca-Maria Mayrhofer; Gautam J Shah; Daniel T Graesser; Chad M Rienstra
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-14       Impact factor: 11.205

10.  Four-dimensional heteronuclear correlation experiments for chemical shift assignment of solid proteins.

Authors:  W Trent Franks; Kathryn D Kloepper; Benjamin J Wylie; Chad M Rienstra
Journal:  J Biomol NMR       Date:  2007-08-09       Impact factor: 2.582

View more
  8 in total

1.  Enhanced sensitivity by nonuniform sampling enables multidimensional MAS NMR spectroscopy of protein assemblies.

Authors:  Sivakumar Paramasivam; Christopher L Suiter; Guangjin Hou; Shangjin Sun; Melissa Palmer; Jeffrey C Hoch; David Rovnyak; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2012-06-18       Impact factor: 2.991

2.  Simultaneous acquisition of PAR and PAIN spectra.

Authors:  Anders B Nielsen; Kathrin Székely; Julia Gath; Matthias Ernst; Niels Chr Nielsen; Beat H Meier
Journal:  J Biomol NMR       Date:  2012-02-28       Impact factor: 2.835

3.  Sensitivity gains, linearity, and spectral reproducibility in nonuniformly sampled multidimensional MAS NMR spectra of high dynamic range.

Authors:  Christopher L Suiter; Sivakumar Paramasivam; Guangjin Hou; Shangjin Sun; David Rice; Jeffrey C Hoch; David Rovnyak; Tatyana Polenova
Journal:  J Biomol NMR       Date:  2014-04-22       Impact factor: 2.835

4.  Towards automatic protein backbone assignment using proton-detected 4D solid-state NMR data.

Authors:  ShengQi Xiang; Veniamin Chevelkov; Stefan Becker; Adam Lange
Journal:  J Biomol NMR       Date:  2014-09-06       Impact factor: 2.835

5.  MAS NMR of HIV-1 protein assemblies.

Authors:  Christopher L Suiter; Caitlin M Quinn; Manman Lu; Guangjin Hou; Huilan Zhang; Tatyana Polenova
Journal:  J Magn Reson       Date:  2015-04       Impact factor: 2.229

6.  A time-saving strategy for MAS NMR spectroscopy by combining nonuniform sampling and paramagnetic relaxation assisted condensed data collection.

Authors:  Shangjin Sun; Si Yan; Changmiao Guo; Mingyue Li; Jeffrey C Hoch; John C Williams; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2012-11-12       Impact factor: 2.991

Review 7.  Magic angle spinning NMR of viruses.

Authors:  Caitlin M Quinn; Manman Lu; Christopher L Suiter; Guangjin Hou; Huilan Zhang; Tatyana Polenova
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2015-02-16       Impact factor: 9.795

Review 8.  Facing and Overcoming Sensitivity Challenges in Biomolecular NMR Spectroscopy.

Authors:  Jan-Henrik Ardenkjaer-Larsen; Gregory S Boebinger; Arnaud Comment; Simon Duckett; Arthur S Edison; Frank Engelke; Christian Griesinger; Robert G Griffin; Christian Hilty; Hidaeki Maeda; Giacomo Parigi; Thomas Prisner; Enrico Ravera; Jan van Bentum; Shimon Vega; Andrew Webb; Claudio Luchinat; Harald Schwalbe; Lucio Frydman
Journal:  Angew Chem Int Ed Engl       Date:  2015-07-01       Impact factor: 15.336

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.