Literature DB >> 11519745

Methods for sequential resonance assignment in solid, uniformly 13C, 15N labelled peptides: quantification and application to antamanide.

A Detken1, E H Hardy, M Ernst, M Kainosho, T Kawakami, S Aimoto, B H Meier.   

Abstract

The application of adiabatic polarization-transfer experiments to resonance assignment in solid, uniformly 13C-15N-labelled polypeptides is demonstrated for the cyclic decapeptide antamanide. A homonuclear correlation experiment employing the DREAM sequence for adiabatic dipolar transfer yields a complete assignment of the C(alpha) and aliphatic side-chain 13C resonances to amino acid types. The same information can be obtained from a TOBSY experiment using the recently introduced P9(12)1 TOBSY sequence, which employs the J couplings as a transfer mechanism. A comparison of the two methods is presented. Except for some aromatic phenylalanine resonances, a complete sequence-specific assignment of the 13C and 15N resonances in antamanide is achieved by a series of selective or broadband adiabatic triple-resonance experiments. Heteronuclear transfer by adiabatic-passage Hartmann-Hahn cross polarization is combined with adiabatic homonuclear transfer by the DREAM and rotational-resonance tickling sequences into two- and three-dimensional experiments. The performance of these experiments is evaluated quantitatively.

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Year:  2001        PMID: 11519745     DOI: 10.1023/a:1011212100630

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  17 in total

1.  Fast MAS total through-bond correlation spectroscopy.

Authors:  E H Hardy; R Verel; B H Meier
Journal:  J Magn Reson       Date:  2001-02       Impact factor: 2.229

2.  Adiabatic dipolar recoupling in solid-state NMR: the DREAM scheme.

Authors:  R Verel; M Ernst; B H Meier
Journal:  J Magn Reson       Date:  2001-05       Impact factor: 2.229

Review 3.  Dipolar recoupling in MAS spectra of biological solids.

Authors:  R G Griffin
Journal:  Nat Struct Biol       Date:  1998-07

4.  Resonance assignment of 13C/15N labeled solid proteins by two- and three-dimensional magic-angle-spinning NMR.

Authors:  M Hong
Journal:  J Biomol NMR       Date:  1999-09       Impact factor: 2.835

5.  The discovery, isolation, elucidation of structure, and synthesis of antamanide.

Authors:  T Wieland
Journal:  Angew Chem Int Ed Engl       Date:  1968-03       Impact factor: 15.336

6.  Application of phase sensitive two-dimensional correlated spectroscopy (COSY) for measurements of 1H-1H spin-spin coupling constants in proteins.

Authors:  D Marion; K Wüthrich
Journal:  Biochem Biophys Res Commun       Date:  1983-06-29       Impact factor: 3.575

7.  Temperature calibration under ultrafast MAS conditions

Authors: 
Journal:  J Magn Reson       Date:  1999-05       Impact factor: 2.229

8.  Sample optimization and identification of signal patterns of amino acid side chains in 2D RFDR spectra of the alpha-spectrin SH3 domain.

Authors:  J Pauli; B van Rossum; H Förster; H J de Groot; H Oschkinat
Journal:  J Magn Reson       Date:  2000-04       Impact factor: 2.229

Review 9.  Amatoxins, phallotoxins, phallolysin, and antamanide: the biologically active components of poisonous Amanita mushrooms.

Authors:  T Wieland; H Faulstich
Journal:  CRC Crit Rev Biochem       Date:  1978-12

10.  Fast broadband inversion by adiabatic pulses.

Authors:  T L Hwang; P C van Zijl; M Garwood
Journal:  J Magn Reson       Date:  1998-07       Impact factor: 2.229

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  35 in total

1.  Chemical shift correlation via RFDR: elimination of resonance offset effects.

Authors:  Bert Heise; Jörg Leppert; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2002-11       Impact factor: 2.835

2.  De novo determination of peptide structure with solid-state magic-angle spinning NMR spectroscopy.

Authors:  Chad M Rienstra; Lisa Tucker-Kellogg; Christopher P Jaroniec; Morten Hohwy; Bernd Reif; Michael T McMahon; Bruce Tidor; Tomas Lozano-Pérez; Robert G Griffin
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-29       Impact factor: 11.205

Review 3.  Recent developments in solid-state magic-angle spinning, nuclear magnetic resonance of fully and significantly isotopically labelled peptides and proteins.

Authors:  Suzana K Straus
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-06-29       Impact factor: 6.237

4.  Adiabatic TOBSY in rotating solids.

Authors:  Jörg Leppert; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2004-06       Impact factor: 2.835

5.  Biosynthetic site-specific (13) C labeling of the light-harvesting 2 protein complex: a model for solid state NMR structure determination of transmembrane proteins.

Authors:  A J van Gammeren; F B Hulsbergen; J G Hollander; H J M de Groot
Journal:  J Biomol NMR       Date:  2004-11       Impact factor: 2.835

6.  Homonuclear mixing sequences for perdeuterated proteins.

Authors:  Kuo-Ying Huang; Ansgar B Siemer; Ann E McDermott
Journal:  J Magn Reson       Date:  2010-10-26       Impact factor: 2.229

7.  ICMRBS founder's medal 2006: biological solid-state NMR, methods and applications.

Authors:  Marc Baldus
Journal:  J Biomol NMR       Date:  2007-07-27       Impact factor: 2.835

8.  Design of high-power, broadband 180 degrees pulses and mixing sequences for fast MAS solid state chemical shift correlation NMR spectroscopy.

Authors:  Christian Herbst; Jirada Herbst; Anika Kirschstein; Jörg Leppert; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2008-11-19       Impact factor: 2.835

9.  Numerical design of RN(n)(nu) symmetry-based RF pulse schemes for recoupling and decoupling of nuclear spin interactions at high MAS frequencies.

Authors:  Christian Herbst; Jirada Herbst; Jörg Leppert; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2009-06-26       Impact factor: 2.835

10.  Solid state NMR sequential resonance assignments and conformational analysis of the 2x10.4 kDa dimeric form of the Bacillus subtilis protein Crh.

Authors:  Anja Böckmann; Adam Lange; Anne Galinier; Sorin Luca; Nicolas Giraud; Michel Juy; Henrike Heise; Roland Montserret; François Penin; Marc Baldus
Journal:  J Biomol NMR       Date:  2003-12       Impact factor: 2.835

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