Literature DB >> 20967321

Enzyme-assisted binary probe for sensitive detection of RNA and DNA.

Yulia V Gerasimova1, Sadia Peck, Dmitry M Kolpashchikov.   

Abstract

The new enzyme-assisted assay for DNA/RNA detection provides real-time fluorescent signal readout along with low limit of detection and high discrimination power toward a single-base substitution. Requiring only two new unmodified DNA oligonucleotides for the detection of each new analyte, the assay is an efficient tool for low-cost analysis of multiple analytes.

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Year:  2010        PMID： 20967321      PMCID： PMC3010920          DOI： 10.1039/c0cc03248d

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN： 1359-7345            Impact factor:   6.222


  26 in total

Review 1.  Nanostructures in biodiagnostics.

Authors:  Nathaniel L Rosi; Chad A Mirkin
Journal:  Chem Rev       Date:  2005-04       Impact factor: 60.622

2.  Binary malachite green aptamer for fluorescent detection of nucleic acids.

Authors:  Dmitry M Kolpashchikov
Journal:  J Am Chem Soc       Date:  2005-09-14       Impact factor: 15.419

Review 3.  Real-time assays with molecular beacons and other fluorescent nucleic acid hybridization probes.

Authors:  Salvatore A E Marras; Sanjay Tyagi; Fred Russell Kramer
Journal:  Clin Chim Acta       Date:  2005-08-18       Impact factor: 3.786

4.  A binary DNA probe for highly specific nucleic Acid recognition.

Authors:  Dmitry M Kolpashchikov
Journal:  J Am Chem Soc       Date:  2006-08-16       Impact factor: 15.419

5.  Molecular beacons: probes that fluoresce upon hybridization.

Authors:  S Tyagi; F R Kramer
Journal:  Nat Biotechnol       Date:  1996-03       Impact factor: 54.908

6.  Catalytic molecular beacons.

Authors:  M N Stojanovic; P de Prada; D W Landry
Journal:  Chembiochem       Date:  2001-06-01       Impact factor: 3.164

7.  Excision of misincorporated ribonucleotides in DNA by RNase H (type 2) and FEN-1 in cell-free extracts.

Authors:  Bjorn Rydberg; John Game
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-10       Impact factor: 11.205

8.  DNA-catalyzed transfer of a reporter group.

Authors:  Tom N Grossmann; Oliver Seitz
Journal:  J Am Chem Soc       Date:  2006-12-13       Impact factor: 15.419

9.  A single molecular beacon probe is sufficient for the analysis of multiple nucleic acid sequences.

Authors:  Yulia V Gerasimova; Aaron Hayson; Jack Ballantyne; Dmitry M Kolpashchikov
Journal:  Chembiochem       Date:  2010-08-16       Impact factor: 3.164

Review 10.  Structures of helical junctions in nucleic acids.

Authors:  D M Lilley
Journal:  Q Rev Biophys       Date:  2000-05       Impact factor: 5.318
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  9 in total

1.  Molecular-beacon-based tricomponent probe for SNP analysis in folded nucleic acids.

Authors:  Camha Nguyen; Jeffrey Grimes; Yulia V Gerasimova; Dmitry M Kolpashchikov
Journal:  Chemistry       Date:  2011-09-28       Impact factor: 5.236

2.  DNA nanotechnology for nucleic acid analysis: DX motif-based sensor.

Authors:  Dmitry M Kolpashchikov; Yulia V Gerasimova; Mohammad S Khan
Journal:  Chembiochem       Date:  2011-10-18       Impact factor: 3.164

3.  Cascade of deoxyribozymes for the colorimetric analysis of drug resistance in Mycobacterium tuberculosis.

Authors:  Bidhan C Dhar; Adam J Reed; Suvra Mitra; Patricia Rodriguez Sanchez; Daria D Nedorezova; Ryan P Connelly; Kyle H Rohde; Yulia V Gerasimova
Journal:  Biosens Bioelectron       Date:  2020-06-13       Impact factor: 10.618

4.  RNase H meets molecular beacons: an ultrasensitive fluorometric assay for nucleic acids.

Authors:  Shao-Xiang Wang; Kai-Sheng Liu; Yi-Fei Lou; Shao-Qi Wang; Yong-Bo Peng; Jian-Ping Chen; Jia-Hao Huang; Shou-Xia Xie; Liang Cui; Xiao Wang
Journal:  Mikrochim Acta       Date:  2018-07-14       Impact factor: 5.833

5.  Sensitive Detection of Small-Molecule Targets Using Cooperative Binding Split Aptamers and Enzyme-Assisted Target Recycling.

Authors:  Haixiang Yu; Juan Canoura; Bhargav Guntupalli; Obtin Alkhamis; Yi Xiao
Journal:  Anal Chem       Date:  2018-01-16       Impact factor: 6.986

6.  Species Typing of Nontuberculous Mycobacteria by Use of Deoxyribozyme Sensors.

Authors:  Hillary N Wood; Ashelyn E Sidders; Lauren E Brumsey; Evgeny S Morozkin; Yulia V Gerasimova; Kyle H Rohde
Journal:  Clin Chem       Date:  2018-12-06       Impact factor: 8.327

Review 7.  DNA Methyltransferase Activity Assays: Advances and Challenges.

Authors:  Wan Jun Poh; Cayden Pang Pee Wee; Zhiqiang Gao
Journal:  Theranostics       Date:  2016-01-06       Impact factor: 11.556

Review 8.  An elegant biosensor molecular beacon probe: challenges and recent solutions.

Authors:  Dmitry M Kolpashchikov
Journal:  Scientifica (Cairo)       Date:  2012-12-13

9.  Single-ribonucleotide repair-mediated ligation-dependent cycling signal amplification for sensitive and specific detection of DNA methyltransferase.

Authors:  Li-Juan Wang; Xiao Han; Chen-Chen Li; Chun-Yang Zhang
Journal:  Chem Sci       Date:  2018-06-18       Impact factor: 9.825
  9 in total

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