Literature DB >> 16895431

A binary DNA probe for highly specific nucleic Acid recognition.

Dmitry M Kolpashchikov1.   

Abstract

A new concept for nucleic acid probe design is reported. The extremely high selectivity of the probe is predetermined by cooperative hybridization of the two relatively short (10 nucleotide) DNA hairpin fragments to the analyte. A binary DNA probe fluorescently reports the presence of 0.5% of the analyte in excess amount of a single base substituted oligodeoxyribonucleotide and distinguishes single nucleotide substitutions at any position of a 20-mer oligonucleotide at room temperature.

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Year:  2006        PMID: 16895431     DOI: 10.1021/ja0628093

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  28 in total

1.  Molecular-beacon-based tricomponent probe for SNP analysis in folded nucleic acids.

Authors:  Camha Nguyen; Jeffrey Grimes; Yulia V Gerasimova; Dmitry M Kolpashchikov
Journal:  Chemistry       Date:  2011-09-28       Impact factor: 5.236

2.  DNA nanotechnology for nucleic acid analysis: DX motif-based sensor.

Authors:  Dmitry M Kolpashchikov; Yulia V Gerasimova; Mohammad S Khan
Journal:  Chembiochem       Date:  2011-10-18       Impact factor: 3.164

3.  Split DNA enzyme for visual single nucleotide polymorphism typing.

Authors:  Dmitry M Kolpashchikov
Journal:  J Am Chem Soc       Date:  2008-02-19       Impact factor: 15.419

4.  A binary deoxyribozyme for nucleic acid analysis.

Authors:  Dmitry M Kolpashchikov
Journal:  Chembiochem       Date:  2007-11-23       Impact factor: 3.164

5.  Toward a general approach for RNA-templated hierarchical assembly of split-proteins.

Authors:  Jennifer L Furman; Ahmed H Badran; Oluyomi Ajulo; Jason R Porter; Cliff I Stains; David J Segal; Indraneel Ghosh
Journal:  J Am Chem Soc       Date:  2010-08-25       Impact factor: 15.419

6.  Detection of bacterial 16S rRNA using a molecular beacon-based X sensor.

Authors:  Yulia V Gerasimova; Dmitry M Kolpashchikov
Journal:  Biosens Bioelectron       Date:  2012-09-05       Impact factor: 10.618

7.  A mutation-resistant deoxyribozyme OR gate for highly selective detection of viral nucleic acids.

Authors:  Ola Kamar; Sin-Cih Sun; Chieh-Hua Lin; Wan-Yu Chung; Min-Shi Lee; Yu-Chieh Liao; Dmitry M Kolpashchikov; Min-Chieh Chuang
Journal:  Chem Commun (Camb)       Date:  2017-09-21       Impact factor: 6.222

8.  Divide and Control: Comparison of Split and Switch Hybridization Sensors.

Authors:  Alexandra L Smith; Dmitry M Kolpashchikov
Journal:  ChemistrySelect       Date:  2017-07-04       Impact factor: 2.109

9.  A Single Electrochemical Probe Used for Analysis of Multiple Nucleic Acid Sequences.

Authors:  Dawn M Mills; Percy Calvo-Marzal; Jeffer M Pinzon; Stephanie Armas; Dmitry M Kolpashchikov; Karin Y Chumbimuni-Torres
Journal:  Electroanalysis       Date:  2016-11-15       Impact factor: 3.223

10.  Molecular logic gates for DNA analysis: detection of rifampin resistance in M. tuberculosis DNA.

Authors:  Evan M Cornett; Eleanor A Campbell; George Gulenay; Evan Peterson; Neha Bhaskar; Dmitry M Kolpashchikov
Journal:  Angew Chem Int Ed Engl       Date:  2012-08-09       Impact factor: 15.336

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