Literature DB >> 20943757

Nuclear organization and dosage compensation.

Jennifer C Chow1, Edith Heard.   

Abstract

Dosage compensation is a strategy to deal with the imbalance of sex chromosomal gene products relative to autosomes and also between the sexes. The mechanisms that ensure dosage compensation for X-chromosome activity have been extensively studied in mammals, worms, and flies. Although each entails very different mechanisms to equalize the dose of X-linked genes between the sexes, they all involve the co-ordinate regulation of hundreds of genes specifically on the sex chromosomes and not the autosomes. In addition to chromatin modifications and changes in higher order chromatin structure, nuclear organization is emerging as an important component of these chromosome-wide processes and in the specific targeting of dosage compensation complexes to the sex chromosomes. Preferential localization within the nucleus and 3D organization are thought to contribute to the differential treatment of two identical homologs within the same nucleus, as well as to the chromosome-wide spread and stable maintenance of heterochromatin.

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Year:  2010        PMID: 20943757      PMCID: PMC2964184          DOI: 10.1101/cshperspect.a000604

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  85 in total

Review 1.  The function of nuclear architecture: a genetic approach.

Authors:  Angela Taddei; Florence Hediger; Frank R Neumann; Susan M Gasser
Journal:  Annu Rev Genet       Date:  2004       Impact factor: 16.830

2.  Boundaries between chromosomal domains of X inactivation and escape bind CTCF and lack CpG methylation during early development.

Authors:  Galina N Filippova; Mimi K Cheng; James M Moore; Jean-Pierre Truong; Ying J Hu; Di Kim Nguyen; Karen D Tsuchiya; Christine M Disteche
Journal:  Dev Cell       Date:  2005-01       Impact factor: 12.270

3.  Dosage compensation of the active X chromosome in mammals.

Authors:  Di Kim Nguyen; Christine M Disteche
Journal:  Nat Genet       Date:  2005-12-11       Impact factor: 38.330

4.  Transient homologous chromosome pairing marks the onset of X inactivation.

Authors:  Na Xu; Chia-Lun Tsai; Jeannie T Lee
Journal:  Science       Date:  2006-01-19       Impact factor: 47.728

5.  Transient colocalization of X-inactivation centres accompanies the initiation of X inactivation.

Authors:  Christian P Bacher; Michèle Guggiari; Benedikt Brors; Sandrine Augui; Philippe Clerc; Philip Avner; Roland Eils; Edith Heard
Journal:  Nat Cell Biol       Date:  2006-01-24       Impact factor: 28.824

6.  Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells.

Authors:  Michael Weber; Jonathan J Davies; David Wittig; Edward J Oakeley; Michael Haase; Wan L Lam; Dirk Schübeler
Journal:  Nat Genet       Date:  2005-07-10       Impact factor: 38.330

7.  In the platypus a meiotic chain of ten sex chromosomes shares genes with the bird Z and mammal X chromosomes.

Authors:  Frank Grützner; Willem Rens; Enkhjargal Tsend-Ayush; Nisrine El-Mogharbel; Patricia C M O'Brien; Russell C Jones; Malcolm A Ferguson-Smith; Jennifer A Marshall Graves
Journal:  Nature       Date:  2004-10-24       Impact factor: 49.962

8.  Resolution and evolution of the duck-billed platypus karyotype with an X1Y1X2Y2X3Y3X4Y4X5Y5 male sex chromosome constitution.

Authors:  Willem Rens; Frank Grützner; Patricia C M O'brien; Helen Fairclough; Jennifer A M Graves; Malcolm A Ferguson-Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-08       Impact factor: 11.205

9.  Epigenetic spreading of the Drosophila dosage compensation complex from roX RNA genes into flanking chromatin.

Authors:  R L Kelley; V H Meller; P R Gordadze; G Roman; R L Davis; M I Kuroda
Journal:  Cell       Date:  1999-08-20       Impact factor: 41.582

10.  Multiple spatially distinct types of facultative heterochromatin on the human inactive X chromosome.

Authors:  Brian P Chadwick; Huntington F Willard
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-01       Impact factor: 11.205

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  19 in total

1.  Sex chromosome evolution in moths and butterflies.

Authors:  Ken Sahara; Atsuo Yoshido; Walther Traut
Journal:  Chromosome Res       Date:  2012-01       Impact factor: 5.239

Review 2.  Random monoallelic expression of autosomal genes: stochastic transcription and allele-level regulation.

Authors:  Björn Reinius; Rickard Sandberg
Journal:  Nat Rev Genet       Date:  2015-10-07       Impact factor: 53.242

3.  Linking dosage compensation and X chromosome nuclear organization in C. elegans.

Authors:  Rahul Sharma; Peter Meister
Journal:  Nucleus       Date:  2015-06-09       Impact factor: 4.197

4.  X-inactivation and X-reactivation: epigenetic hallmarks of mammalian reproduction and pluripotent stem cells.

Authors:  Bernhard Payer; Jeannie T Lee; Satoshi H Namekawa
Journal:  Hum Genet       Date:  2011-06-12       Impact factor: 4.132

Review 5.  Dosage compensation of the sex chromosomes.

Authors:  Christine M Disteche
Journal:  Annu Rev Genet       Date:  2012-09-04       Impact factor: 16.830

6.  Human inactive X chromosome is compacted through a PRC2-independent SMCHD1-HBiX1 pathway.

Authors:  Ryu-Suke Nozawa; Koji Nagao; Ken-Taro Igami; Sachiko Shibata; Natsuko Shirai; Naohito Nozaki; Takashi Sado; Hiroshi Kimura; Chikashi Obuse
Journal:  Nat Struct Mol Biol       Date:  2013-03-31       Impact factor: 15.369

Review 7.  Random monoallelic expression: regulating gene expression one allele at a time.

Authors:  Mélanie A Eckersley-Maslin; David L Spector
Journal:  Trends Genet       Date:  2014-04-26       Impact factor: 11.639

8.  MDC1 directs chromosome-wide silencing of the sex chromosomes in male germ cells.

Authors:  Yosuke Ichijima; Misako Ichijima; Zhenkun Lou; André Nussenzweig; R Daniel Camerini-Otero; Junjie Chen; Paul R Andreassen; Satoshi H Namekawa
Journal:  Genes Dev       Date:  2011-05-01       Impact factor: 11.361

9.  Involvement of X-chromosome Reactivation in Augmenting Cancer Testis Antigens Expression: A Hypothesis.

Authors:  Chang Liu; Bin Luo; Xiao-Xun Xie; Xing-Sheng Liao; Jun Fu; Ying-Ying Ge; Xi-Sheng Li; Gao-Shui Guo; Ning Shen; Shao-Wen Xiao; Qing-Mei Zhang
Journal:  Curr Med Sci       Date:  2018-03-15

10.  Long non-coding RNAs and human X-chromosome regulation: a coat for the active X chromosome.

Authors:  Céline Vallot; Claire Rougeulle
Journal:  RNA Biol       Date:  2013-07-19       Impact factor: 4.652

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