Literature DB >> 23948700

Long non-coding RNAs and human X-chromosome regulation: a coat for the active X chromosome.

Céline Vallot1, Claire Rougeulle.   

Abstract

In mammals, the genic disequilibrium between males (XY) and females (XX) is resolved through the inactivation of one of the X-chromosomes in females. X-chromosome inactivation (XCI) takes place in all mammalian species, but has mainly been studied in the mouse model where it was shown to be controlled by the interplay of several long non-coding RNA (lncRNA). However, recent data point toward the existence of species divergences among mammals in the strategies used to achieve XCI. The recent discovery of XACT, a novel lncRNA that coats the active X-chromosome specifically in human pluripotent cells, further highlights the existence of human-specific mechanisms of X-chromosome regulation. Here, we discuss the roles of lncRNAs in defining species-specific mechanisms controlling X-inactivation and explore the potential role of large lncRNAs in gene activation.

Entities:  

Keywords:  X-chromosome inactivation; XACT; XIST; chromosome coating; long non-coding RNAs

Mesh:

Substances:

Year:  2013        PMID: 23948700      PMCID: PMC3817146          DOI: 10.4161/rna.25802

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  25 in total

1.  Epigenetic dynamics of imprinted X inactivation during early mouse development.

Authors:  Ikuhiro Okamoto; Arie P Otte; C David Allis; Danny Reinberg; Edith Heard
Journal:  Science       Date:  2003-12-11       Impact factor: 47.728

Review 2.  Nuclear organization and dosage compensation.

Authors:  Jennifer C Chow; Edith Heard
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-10-13       Impact factor: 10.005

3.  Tsix transcription across the Xist gene alters chromatin conformation without affecting Xist transcription: implications for X-chromosome inactivation.

Authors:  Pablo Navarro; Sylvain Pichard; Constance Ciaudo; Philip Avner; Claire Rougeulle
Journal:  Genes Dev       Date:  2005-06-15       Impact factor: 11.361

Review 4.  Linking X chromosome inactivation to pluripotency: Necessity or fate?

Authors:  Mélanie Makhlouf; Claire Rougeulle
Journal:  Trends Mol Med       Date:  2011-03-15       Impact factor: 11.951

5.  A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression.

Authors:  Kevin C Wang; Yul W Yang; Bo Liu; Amartya Sanyal; Ryan Corces-Zimmerman; Yong Chen; Bryan R Lajoie; Angeline Protacio; Ryan A Flynn; Rajnish A Gupta; Joanna Wysocka; Ming Lei; Job Dekker; Jill A Helms; Howard Y Chang
Journal:  Nature       Date:  2011-03-20       Impact factor: 49.962

6.  Long noncoding RNAs with enhancer-like function in human cells.

Authors:  Ulf Andersson Ørom; Thomas Derrien; Malte Beringer; Kiranmai Gumireddy; Alessandro Gardini; Giovanni Bussotti; Fan Lai; Matthias Zytnicki; Cedric Notredame; Qihong Huang; Roderic Guigo; Ramin Shiekhattar
Journal:  Cell       Date:  2010-10-01       Impact factor: 41.582

7.  Eutherian mammals use diverse strategies to initiate X-chromosome inactivation during development.

Authors:  Ikuhiro Okamoto; Catherine Patrat; Dominique Thépot; Nathalie Peynot; Patricia Fauque; Nathalie Daniel; Patricia Diabangouaya; Jean-Philippe Wolf; Jean-Paul Renard; Véronique Duranthon; Edith Heard
Journal:  Nature       Date:  2011-04-06       Impact factor: 49.962

8.  The long noncoding RNA, Jpx, is a molecular switch for X chromosome inactivation.

Authors:  Di Tian; Sha Sun; Jeannie T Lee
Journal:  Cell       Date:  2010-10-29       Impact factor: 41.582

9.  Ftx is a non-coding RNA which affects Xist expression and chromatin structure within the X-inactivation center region.

Authors:  Corinne Chureau; Sophie Chantalat; Antonio Romito; Angélique Galvani; Laurent Duret; Philip Avner; Claire Rougeulle
Journal:  Hum Mol Genet       Date:  2010-11-30       Impact factor: 6.150

10.  A user's guide to the encyclopedia of DNA elements (ENCODE).

Authors: 
Journal:  PLoS Biol       Date:  2011-04-19       Impact factor: 8.029

View more
  5 in total

Review 1.  Divergent actions of long noncoding RNAs on X-chromosome remodelling in mammals and Drosophila achieve the same end result: dosage compensation.

Authors:  Subhash C Lakhotia
Journal:  J Genet       Date:  2015-12       Impact factor: 1.166

2.  Multiple information carried by RNAs: total eclipse or a light at the end of the tunnel?

Authors:  Baptiste Bogard; Claire Francastel; Florent Hubé
Journal:  RNA Biol       Date:  2020-06-26       Impact factor: 4.652

3.  A statistical framework to predict functional non-coding regions in the human genome through integrated analysis of annotation data.

Authors:  Qiongshi Lu; Yiming Hu; Jiehuan Sun; Yuwei Cheng; Kei-Hoi Cheung; Hongyu Zhao
Journal:  Sci Rep       Date:  2015-05-27       Impact factor: 4.379

4.  Sizes of Long RNA Molecules Are Determined by the Branching Patterns of Their Secondary Structures.

Authors:  Alexander Borodavka; Surendra W Singaram; Peter G Stockley; William M Gelbart; Avinoam Ben-Shaul; Roman Tuma
Journal:  Biophys J       Date:  2016-11-15       Impact factor: 4.033

5.  Osblr8 orchestrates intrachromosomal loop structure required for maintaining stem cell pluripotency.

Authors:  Yanbo Zhu; Zi Yan; Zhonghua Du; Shilin Zhang; Changhao Fu; Ying Meng; Xue Wen; Yizhuo Wang; Andrew R Hoffman; Ji-Fan Hu; Jiuwei Cui; Wei Li
Journal:  Int J Biol Sci       Date:  2020-04-06       Impact factor: 6.580

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.