Literature DB >> 20942518

Biased diffusion in tubes formed by spherical compartments.

Alexander M Berezhkovskii1, Leonardo Dagdug.   

Abstract

We study the effect of the driving force on brownian motion of a point particle in a tube formed by identical spherical compartments, which create periodic entropy potential for the motion along the tube axis. The focus is on (i) the effective mobility and diffusion coefficient of the particle as functions of the driving force, (ii) localization of the particle in the central part of the tube induced by the driving force, and (iii) transit time of the particle between the openings connecting neighboring compartments. Some of the results at very small and large driving force are obtained analytically, while the majority of the results are obtained from brownian dynamics simulations.

Mesh:

Year:  2010        PMID: 20942518      PMCID: PMC2962658          DOI: 10.1063/1.3489375

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  28 in total

1.  Kinetic equations for diffusion in the presence of entropic barriers.

Authors:  D Reguera; J M Rubí
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2001-11-21

2.  Mobility in periodic channels formed by cylindrical cavities.

Authors:  Fabio Marchesoni
Journal:  J Chem Phys       Date:  2010-04-28       Impact factor: 3.488

3.  Current in a three-dimensional periodic tube with unbiased forces.

Authors:  Bao-quan Ai; Liang-gang Liu
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-11-17

4.  Diffusion in a tube of varying cross section: numerical study of reduction to effective one-dimensional description.

Authors:  A M Berezhkovskii; M A Pustovoit; S M Bezrukov
Journal:  J Chem Phys       Date:  2007-04-07       Impact factor: 3.488

5.  A channel Brownian pump powered by an unbiased external force.

Authors:  Bao-Quan Ai; Liang-Gang Liu
Journal:  J Chem Phys       Date:  2008-01-14       Impact factor: 3.488

Review 6.  Diffusion in confined geometries.

Authors:  P Sekhar Burada; Peter Hänggi; Fabio Marchesoni; Gerhard Schmid; Peter Talkner
Journal:  Chemphyschem       Date:  2009-01-12       Impact factor: 3.102

7.  One-dimensional description of diffusion in a tube of abruptly changing diameter: Boundary homogenization based approach.

Authors:  Alexander M Berezhkovskii; Alexander V Barzykin; Vladimir Yu Zitserman
Journal:  J Chem Phys       Date:  2009-12-14       Impact factor: 3.488

8.  Entropic transport: a test bed for the Fick-Jacobs approximation.

Authors:  P Sekhar Burada; Gerhard Schmid; Peter Hänggi
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2009-08-28       Impact factor: 4.226

9.  Rectification currents in two-dimensional artificial channels.

Authors:  Fabio Marchesoni; Sergey Savel'ev
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-07-17

10.  Directed transport driven by the transverse wall vibration.

Authors:  Bao-quan Ai
Journal:  J Chem Phys       Date:  2009-08-07       Impact factor: 3.488

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  7 in total

1.  Communication: drift velocity of Brownian particle in a periodically tapered tube induced by a time-periodic force with zero mean: dependence on the force period.

Authors:  V Yu Zitserman; A M Berezhkovskii; A E Antipov; Yu A Makhnovskii
Journal:  J Chem Phys       Date:  2011-09-28       Impact factor: 3.488

2.  Communications: Drift and diffusion in a tube of periodically varying diameter. Driving force induced intermittency.

Authors:  Alexander M Berezhkovskii; Leonardo Dagdug; Yurii A Makhnovskii; Vladimir Yu Zitserman
Journal:  J Chem Phys       Date:  2010-06-14       Impact factor: 3.488

3.  Biased diffusion in tubes of alternating diameter: Numerical study over a wide range of biasing force.

Authors:  Yurii A Makhnovskii; Alexander M Berezhkovskii; Anatoly E Antipov; Vladimir Yu Zitserman
Journal:  J Chem Phys       Date:  2015-11-07       Impact factor: 3.488

4.  Communication: Turnover behavior of effective mobility in a tube with periodic entropy potential.

Authors:  Leonardo Dagdug; Alexander M Berezhkovskii; Yurii A Makhnovskii; Vladimir Yu Zitserman; Sergey M Bezrukov
Journal:  J Chem Phys       Date:  2011-03-14       Impact factor: 3.488

5.  Analytical treatment of biased diffusion in tubes with periodic dead ends.

Authors:  Alexander M Berezhkovskii; Leonardo Dagdug
Journal:  J Chem Phys       Date:  2011-03-28       Impact factor: 3.488

6.  Biased diffusion in tubes of alternating diameter: analytical treatment in the case of strong bias.

Authors:  Vladimir Yu Zitserman; Alexander M Berezhkovskii; Anatoly E Antipov; Yurii A Makhnovskii
Journal:  J Chem Phys       Date:  2014-12-07       Impact factor: 3.488

7.  Driven diffusion in a periodically compartmentalized tube: homogeneity versus intermittency of particle motion.

Authors:  Yu A Makhnovskii; A M Berezhkovskii; L V Bogachev; V Yu Zitserman
Journal:  J Phys Chem B       Date:  2011-03-18       Impact factor: 2.991

  7 in total

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