Literature DB >> 26547153

Biased diffusion in tubes of alternating diameter: Numerical study over a wide range of biasing force.

Yurii A Makhnovskii1, Alexander M Berezhkovskii2, Anatoly E Antipov3, Vladimir Yu Zitserman4.   

Abstract

This paper is devoted to particle transport in a tube formed by alternating wide and narrow sections, in the presence of an external biasing force. The focus is on the effective transport coefficients--mobility and diffusivity, as functions of the biasing force and the geometric parameters of the tube. Dependences of the effective mobility and diffusivity on the tube geometric parameters are known in the limiting cases of no bias and strong bias. The approximations used to obtain these results are inapplicable at intermediate values of the biasing force. To bridge the two limits Brownian dynamics simulations were run to determine the transport coefficients at intermediate values of the force. The simulations were performed for a representative set of tube geometries over a wide range of the biasing force. They revealed that there is a range of the narrow section length, where the force dependence of the mobility has a maximum. In contrast, the diffusivity is a monotonically increasing function of the force. A simple formula is proposed, which reduces to the known dependences of the diffusivity on the tube geometric parameters in both limits of zero and strong bias. At intermediate values of the biasing force, the formula catches the diffusivity dependence on the narrow section length, if the radius of these sections is not too small.

Year:  2015        PMID: 26547153      PMCID: PMC4636501          DOI: 10.1063/1.4934728

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  10 in total

1.  Mobility in periodic channels formed by cylindrical cavities.

Authors:  Fabio Marchesoni
Journal:  J Chem Phys       Date:  2010-04-28       Impact factor: 3.488

2.  Communications: Drift and diffusion in a tube of periodically varying diameter. Driving force induced intermittency.

Authors:  Alexander M Berezhkovskii; Leonardo Dagdug; Yurii A Makhnovskii; Vladimir Yu Zitserman
Journal:  J Chem Phys       Date:  2010-06-14       Impact factor: 3.488

3.  Biased diffusion in tubes formed by spherical compartments.

Authors:  Alexander M Berezhkovskii; Leonardo Dagdug
Journal:  J Chem Phys       Date:  2010-10-07       Impact factor: 3.488

4.  Boundary homogenization for trapping by patchy surfaces.

Authors:  Alexander M Berezhkovskii; Yurii A Makhnovskii; Michael I Monine; Vladimir Yu Zitserman; Stanislav Y Shvartsman
Journal:  J Chem Phys       Date:  2004-12-08       Impact factor: 3.488

5.  Homogenization of boundary conditions on surfaces randomly covered by patches of different sizes and shapes.

Authors:  Yurii A Makhnovskii; Alexander M Berezhkovskii; Vladimir Yu Zitserman
Journal:  J Chem Phys       Date:  2005-06-15       Impact factor: 3.488

6.  Homogenization of boundary conditions for surfaces with regular arrays of traps.

Authors:  Alexander M Berezhkovskii; Michael I Monine; Cyrill B Muratov; Stanislav Y Shvartsman
Journal:  J Chem Phys       Date:  2006-01-21       Impact factor: 3.488

Review 7.  Diffusion in confined geometries.

Authors:  P Sekhar Burada; Peter Hänggi; Fabio Marchesoni; Gerhard Schmid; Peter Talkner
Journal:  Chemphyschem       Date:  2009-01-12       Impact factor: 3.102

8.  One-dimensional description of diffusion in a tube of abruptly changing diameter: Boundary homogenization based approach.

Authors:  Alexander M Berezhkovskii; Alexander V Barzykin; Vladimir Yu Zitserman
Journal:  J Chem Phys       Date:  2009-12-14       Impact factor: 3.488

9.  Biased diffusion in tubes of alternating diameter: analytical treatment in the case of strong bias.

Authors:  Vladimir Yu Zitserman; Alexander M Berezhkovskii; Anatoly E Antipov; Yurii A Makhnovskii
Journal:  J Chem Phys       Date:  2014-12-07       Impact factor: 3.488

10.  Driven diffusion in a periodically compartmentalized tube: homogeneity versus intermittency of particle motion.

Authors:  Yu A Makhnovskii; A M Berezhkovskii; L V Bogachev; V Yu Zitserman
Journal:  J Phys Chem B       Date:  2011-03-18       Impact factor: 2.991

  10 in total

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