Literature DB >> 20925340

Probing the oxyferrous and catalytically active ferryl states of Amphitrite ornata dehaloperoxidase by cryoreduction and EPR/ENDOR spectroscopy. Detection of compound I.

Roman Davydov1, Robert L Osborne, Muralidharan Shanmugam, Jing Du, John H Dawson, Brian M Hoffman.   

Abstract

Dehaloperoxidase (DHP) from Amphitrite ornata is a heme protein that can function both as a hemoglobin and as a peroxidase. This report describes the use of 77 K cryoreduction EPR/ENDOR techniques to study both functions of DHP. Cryoreduced oxyferrous [Fe(II)-O(2)] DHP exhibits two EPR signals characteristic of a peroxoferric [Fe(III)-O(2)(2-)] heme species, reflecting the presence of conformational substates in the oxyferrous precursor. (1)H ENDOR spectroscopy of the cryogenerated substates shows that H-bonding interactions between His N(ε)H and heme-bound O(2) in these conformers are similar to those in the β-chain of oxyferrous hemoglobin A (HbA) and oxyferrous myoglobin, respectively. Decay of cryogenerated peroxoferric heme DHP intermediates upon annealing at temperatures above 180 K is accompanied by the appearance of a new paramagnetic species with an axial EPR signal with g(⊥) = 3.75 and g(∥) = 1.96, characteristic of an S = 3/2 spin state. This species is assigned to Compound I (Cpd I), in which a porphyrin π-cation radical is ferromagnetically coupled with an S = 1 ferryl [Fe(IV)═O] ion. This species was also trapped by rapid freeze-quench of the ambient-temperature reaction mixture of ferric [Fe(III)] DHP and H(2)O(2). However, in the latter case Cpd I is reduced very rapidly by a nearby tyrosine to form Cpd ES [(Fe(IV)═O)(porphyrin)/Tyr(•)]. Addition of the substrate analogue 2,4,6-trifluorophenol (F(3)PhOH) suppresses formation of the Cpd I intermediate during annealing of cryoreduced oxyferrous DHP at 190 K but has no effect on the spectroscopic properties of the remaining cryoreduced oxyferrous DHP intermediates and kinetics of their decay. These observations indicate that substrate (i) binds to oxyferrous DHP outside of the distal pocket and (ii) can reduce Cpd I to Cpd II [Fe(IV)═O]. These assumptions are also supported by the observation that F(3)PhOH has only a small effect on the EPR properties of radiolytically cryooxidized and cryoreduced ferrous [Fe(II)] DHP. EPR spectra of cryoreduced ferrous DHP disclose the multiconformational nature of the ferrous DHP precursor. The observation and characterization of Cpds I, II, and ES in the absence and in the presence of F(3)PhOH provides definitive evidence of a mechanism involving consecutive one-electron steps and clarifies the role of all intermediates formed during turnover.

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Year:  2010        PMID: 20925340      PMCID: PMC2978736          DOI: 10.1021/ja1059747

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  48 in total

1.  Ultrafast microfluidic mixer and freeze-quenching device.

Authors:  Yu Lin; Gary J Gerfen; Denis L Rousseau; Syun-Ru Yeh
Journal:  Anal Chem       Date:  2003-10-15       Impact factor: 6.986

2.  C. fumago chloroperoxidase is also a dehaloperoxidase: oxidative dehalogenation of halophenols.

Authors:  Robert L Osborne; Gregory M Raner; Lowell P Hager; John H Dawson
Journal:  J Am Chem Soc       Date:  2006-02-01       Impact factor: 15.419

3.  Substrate binding triggers a switch in the iron coordination in dehaloperoxidase from Amphitrite ornata: HYSCORE experiments.

Authors:  Tatyana I Smirnova; Ralph T Weber; Mike F Davis; Stefan Franzen
Journal:  J Am Chem Soc       Date:  2008-01-25       Impact factor: 15.419

4.  Cryogenic absorption spectra of hydroperoxo-ferric heme oxygenase, the active intermediate of enzymatic heme oxygenation.

Authors:  Ilia G Denisov; Masao Ikeda-Saito; Tadashi Yoshida; Stephen G Sligar
Journal:  FEBS Lett       Date:  2002-12-04       Impact factor: 4.124

5.  Enzyme function of the globin dehaloperoxidase from Amphitrite ornata is activated by substrate binding.

Authors:  Jennifer Belyea; Lauren B Gilvey; Michael F Davis; Marisha Godek; Tim L Sit; Steven A Lommel; Stefan Franzen
Journal:  Biochemistry       Date:  2005-12-06       Impact factor: 3.162

6.  Characterization of dehaloperoxidase compound ES and its reactivity with trihalophenols.

Authors:  Jeremiah Feducia; Rania Dumarieh; Lauren B G Gilvey; Tatyana Smirnova; Stefan Franzen; Reza A Ghiladi
Journal:  Biochemistry       Date:  2009-02-10       Impact factor: 3.162

7.  EPR and ENDOR detection of compound I from Micrococcus lysodeikticus catalase.

Authors:  M J Benecky; J E Frew; N Scowen; P Jones; B M Hoffman
Journal:  Biochemistry       Date:  1993-11-09       Impact factor: 3.162

8.  X-ray crystal structural analysis of the binding site in the ferric and oxyferrous forms of the recombinant heme dehaloperoxidase cloned from Amphitrite ornata.

Authors:  Vesna de Serrano; Zuxu Chen; Michael F Davis; Stefan Franzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-09-19

9.  EPR and ENDOR studies of cryoreduced compounds II of peroxidases and myoglobin. Proton-coupled electron transfer and protonation status of ferryl hemes.

Authors:  Roman Davydov; Robert L Osborne; Sun Hee Kim; John H Dawson; Brian M Hoffman
Journal:  Biochemistry       Date:  2008-04-12       Impact factor: 3.162

10.  An evidence of the peroxidase-dependent oxygen transfer from hydrogen peroxide to sulfides.

Authors:  S Kobayashi; M Nakano; T Goto; T Kimura; A P Schaap
Journal:  Biochem Biophys Res Commun       Date:  1986-02-26       Impact factor: 3.575

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  13 in total

1.  Functional consequences of the creation of an Asp-His-Fe triad in a 3/3 globin.

Authors:  Edward L D'Antonio; Jennifer D'Antonio; Vesna de Serrano; Hanna Gracz; Matthew K Thompson; Reza A Ghiladi; Edmond F Bowden; Stefan Franzen
Journal:  Biochemistry       Date:  2011-10-13       Impact factor: 3.162

2.  Role of the Proximal Cysteine Hydrogen Bonding Interaction in Cytochrome P450 2B4 Studied by Cryoreduction, Electron Paramagnetic Resonance, and Electron-Nuclear Double Resonance Spectroscopy.

Authors:  Roman Davydov; Sangchoul Im; Muralidharan Shanmugam; William A Gunderson; Naw May Pearl; Brian M Hoffman; Lucy Waskell
Journal:  Biochemistry       Date:  2016-02-03       Impact factor: 3.162

3.  Selective tuning of activity in a multifunctional enzyme as revealed in the F21W mutant of dehaloperoxidase B from Amphitrite ornata.

Authors:  Leiah M Carey; Kyung Beom Kim; Nikolette L McCombs; Paul Swartz; Cheal Kim; Reza A Ghiladi
Journal:  J Biol Inorg Chem       Date:  2017-11-23       Impact factor: 3.358

4.  Crystallographic, kinetic, and spectroscopic study of the first ligninolytic peroxidase presenting a catalytic tyrosine.

Authors:  Yuta Miki; Fabiola R Calviño; Rebecca Pogni; Stefania Giansanti; Francisco J Ruiz-Dueñas; María Jesús Martínez; Riccardo Basosi; Antonio Romero; Angel T Martínez
Journal:  J Biol Chem       Date:  2011-03-02       Impact factor: 5.157

5.  Degradation of sulfide by dehaloperoxidase-hemoglobin from Amphitrite ornata.

Authors:  Francesco P Nicoletti; Matthew K Thompson; Stefan Franzen; Giulietta Smulevich
Journal:  J Biol Inorg Chem       Date:  2011-02-05       Impact factor: 3.358

Review 6.  Active intermediates in heme monooxygenase reactions as revealed by cryoreduction/annealing, EPR/ENDOR studies.

Authors:  Roman Davydov; Brian M Hoffman
Journal:  Arch Biochem Biophys       Date:  2010-09-18       Impact factor: 4.013

7.  Compound I is the reactive intermediate in the first monooxygenation step during conversion of cholesterol to pregnenolone by cytochrome P450scc: EPR/ENDOR/cryoreduction/annealing studies.

Authors:  Roman Davydov; Andrey A Gilep; Natallia V Strushkevich; Sergey A Usanov; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2012-10-05       Impact factor: 15.419

8.  Comparison of the Mechanisms of Heme Hydroxylation by Heme Oxygenases-1 and -2: Kinetic and Cryoreduction Studies.

Authors:  Roman Davydov; Angela S Fleischhacker; Ireena Bagai; Brian M Hoffman; Stephen W Ragsdale
Journal:  Biochemistry       Date:  2015-12-23       Impact factor: 3.162

9.  The use of deuterated camphor as a substrate in (1)H ENDOR studies of hydroxylation by cryoreduced oxy P450cam provides new evidence of the involvement of compound I.

Authors:  Roman Davydov; John H Dawson; Roshan Perera; Brian M Hoffman
Journal:  Biochemistry       Date:  2013-01-14       Impact factor: 3.162

10.  Tyrosyl radicals in dehaloperoxidase: how nature deals with evolving an oxygen-binding globin to a biologically relevant peroxidase.

Authors:  Rania Dumarieh; Jennifer D'Antonio; Alexandria Deliz-Liang; Tatyana Smirnova; Dimitri A Svistunenko; Reza A Ghiladi
Journal:  J Biol Chem       Date:  2013-10-06       Impact factor: 5.157

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