Literature DB >> 26750753

Role of the Proximal Cysteine Hydrogen Bonding Interaction in Cytochrome P450 2B4 Studied by Cryoreduction, Electron Paramagnetic Resonance, and Electron-Nuclear Double Resonance Spectroscopy.

Roman Davydov1, Sangchoul Im2, Muralidharan Shanmugam1, William A Gunderson1, Naw May Pearl2, Brian M Hoffman1, Lucy Waskell2.   

Abstract

Crystallographic studies have shown that the F429H mutation of cytochrome P450 2B4 introduces an H-bond between His429 and the proximal thiolate ligand, Cys436, without altering the protein fold but sharply decreases the enzymatic activity and stabilizes the oxyferrous P450 2B4 complex. To characterize the influence of this hydrogen bond on the states of the catalytic cycle, we have used radiolytic cryoreduction combined with electron paramagnetic resonance (EPR) and (electron-nuclear double resonance (ENDOR) spectroscopy to study and compare their characteristics for wild-type (WT) P450 2B4 and the F429H mutant. (i) The addition of an H-bond to the axial Cys436 thiolate significantly changes the EPR signals of both low-spin and high-spin heme-iron(III) and the hyperfine couplings of the heme-pyrrole (14)N but has relatively little effect on the (1)H ENDOR spectra of the water ligand in the six-coordinate low-spin ferriheme state. These changes indicate that the H-bond introduced between His and the proximal cysteine decreases the extent of S → Fe electron donation and weakens the Fe(III)-S bond. (ii) The added H-bond changes the primary product of cryoreduction of the Fe(II) enzyme, which is trapped in the conformation of the parent Fe(II) state. In the wild-type enzyme, the added electron localizes on the porphyrin, generating an S = (3)/2 state with the anion radical exchange-coupled to the Fe(II). In the mutant, it localizes on the iron, generating an S = (1)/2 Fe(I) state. (iii) The additional H-bond has little effect on g values and (1)H-(14)N hyperfine couplings of the cryogenerated, ferric hydroperoxo intermediate but noticeably slows its decay during cryoannealing. (iv) In both the WT and the mutant enzyme, this decay shows a significant solvent kinetic isotope effect, indicating that the decay reflects a proton-assisted conversion to Compound I (Cpd I). (v) We confirm that Cpd I formed during the annealing of the cryogenerated hydroperoxy intermediate and that it is the active hydroxylating species in both WT P450 2B4 and the F429H mutant. (vi) Our data also indicate that the added H-bond of the mutation diminishes the reactivity of Cpd I.

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Year:  2016        PMID: 26750753      PMCID: PMC4834902          DOI: 10.1021/acs.biochem.5b00744

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  66 in total

1.  EPR spectrometry of cytochrome P450 2B4: effects of mutations and substrate binding.

Authors:  J E LeLean; N Moon; W R Dunham; M J Coon
Journal:  Biochem Biophys Res Commun       Date:  2000-09-24       Impact factor: 3.575

2.  Probing the oxyferrous and catalytically active ferryl states of Amphitrite ornata dehaloperoxidase by cryoreduction and EPR/ENDOR spectroscopy. Detection of compound I.

Authors:  Roman Davydov; Robert L Osborne; Muralidharan Shanmugam; Jing Du; John H Dawson; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2010-10-27       Impact factor: 15.419

Review 3.  P450 enzymes: their structure, reactivity, and selectivity-modeled by QM/MM calculations.

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4.  Identification of the binding site on cytochrome P450 2B4 for cytochrome b5 and cytochrome P450 reductase.

Authors:  A Bridges; L Gruenke; Y T Chang; I A Vakser; G Loew; L Waskell
Journal:  J Biol Chem       Date:  1998-07-03       Impact factor: 5.157

5.  Elucidating the role of the proximal cysteine hydrogen-bonding network in ferric cytochrome P450cam and corresponding mutants using magnetic circular dichroism spectroscopy.

Authors:  Mary Grace I Galinato; Tatyana Spolitak; David P Ballou; Nicolai Lehnert
Journal:  Biochemistry       Date:  2011-01-21       Impact factor: 3.162

6.  The EPR of low spin heme complexes. Relation of the t2g hole model to the directional properties of the g tensor, and a new method for calculating the ligand field parameters.

Authors:  C P Taylor
Journal:  Biochim Biophys Acta       Date:  1977-03-28

Review 7.  Laser flash photolysis generation of high-valent transition metal-oxo species: insights from kinetic studies in real time.

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Journal:  Acc Chem Res       Date:  2008-02-16       Impact factor: 22.384

8.  EPR and ENDOR characterization of the reactive intermediates in the generation of NO by cryoreduced oxy-nitric oxide synthase from Geobacillus stearothermophilus.

Authors:  Roman Davydov; Jawahar Sudhamsu; Nicholas S Lees; Brian R Crane; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2009-10-14       Impact factor: 15.419

9.  Characterization by electron paramagnetic resonance of the interactions of L-arginine and L-thiocitrulline with the heme cofactor region of nitric oxide synthase.

Authors:  J C Salerno; C Frey; K McMillan; R F Williams; B S Masters; O W Griffith
Journal:  J Biol Chem       Date:  1995-11-17       Impact factor: 5.157

10.  Significantly shorter Fe-S bond in cytochrome P450-I is consistent with greater reactivity relative to chloroperoxidase.

Authors:  Courtney M Krest; Alexey Silakov; Jonathan Rittle; Timothy H Yosca; Elizabeth L Onderko; Julio C Calixto; Michael T Green
Journal:  Nat Chem       Date:  2015-08-03       Impact factor: 24.427

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  7 in total

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Authors:  Piotr J Mak; Ilia G Denisov
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2017-06-28       Impact factor: 3.036

Review 2.  Nanodiscs in Membrane Biochemistry and Biophysics.

Authors:  Ilia G Denisov; Stephen G Sligar
Journal:  Chem Rev       Date:  2017-02-08       Impact factor: 60.622

3.  Short-lived neutral FMN and FAD semiquinones are transient intermediates in cryo-reduced yeast NADPH-cytochrome P450 reductase.

Authors:  Roman M Davydov; Gareth Jennings; Brian M Hoffman; Larissa M Podust
Journal:  Arch Biochem Biophys       Date:  2019-08-22       Impact factor: 4.013

4.  Heme redox potentials hold the key to reactivity differences between nitric oxide reductase and heme-copper oxidase.

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Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-25       Impact factor: 11.205

5.  Structure of cytochrome P450 2B4 with an acetate ligand and an active site hydrogen bond network similar to oxyferrous P450cam.

Authors:  Yuting Yang; Weishu Bu; Sangchoul Im; Jennifer Meagher; Jeanne Stuckey; Lucy Waskell
Journal:  J Inorg Biochem       Date:  2018-04-30       Impact factor: 4.155

6.  Spin Interconversion of Heme-Peroxo-Copper Complexes Facilitated by Intramolecular Hydrogen-Bonding Interactions.

Authors:  Andrew W Schaefer; Melanie A Ehudin; David A Quist; Joel A Tang; Kenneth D Karlin; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2019-03-14       Impact factor: 15.419

7.  Direct visualization of a Fe(IV)-OH intermediate in a heme enzyme.

Authors:  Hanna Kwon; Jaswir Basran; Cecilia M Casadei; Alistair J Fielding; Tobias E Schrader; Andreas Ostermann; Juliette M Devos; Pierre Aller; Matthew P Blakeley; Peter C E Moody; Emma L Raven
Journal:  Nat Commun       Date:  2016-11-29       Impact factor: 14.919

  7 in total

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