Literature DB >> 21950839

Functional consequences of the creation of an Asp-His-Fe triad in a 3/3 globin.

Edward L D'Antonio1, Jennifer D'Antonio, Vesna de Serrano, Hanna Gracz, Matthew K Thompson, Reza A Ghiladi, Edmond F Bowden, Stefan Franzen.   

Abstract

The proximal side of dehaloperoxidase-hemoglobin A (DHP A) from Amphitrite ornata has been modified via site-directed mutagenesis of methionine 86 into aspartate (M86D) to introduce an Asp-His-Fe triad charge relay. X-ray crystallographic structure determination of the metcyano forms of M86D [Protein Data Bank (PDB) entry 3MYN ] and M86E (PDB entry 3MYM ) mutants reveal the structural origins of a stable catalytic triad in DHP A. A decrease in the rate of H(2)O(2) activation as well as a lowered reduction potential versus that of the wild-type enzyme was observed in M86D. One possible explanation for the significantly lower activity is an increased affinity for the distal histidine in binding to the heme Fe to form a bis-histidine adduct. Resonance Raman spectroscopy demonstrates a pH-dependent ligation by the distal histidine in M86D, which is indicative of an increased trans effect. At pH 5.0, the heme Fe is five-coordinate, and this structure resembles the wild-type DHP A resting state. However, at pH 7.0, the distal histidine appears to form a six-coordinate ferric bis-histidine (hemichrome) adduct. These observations can be explained by the effect of the increased positive charge on the heme Fe on the formation of a six-coordinate low-spin adduct, which inhibits the ligation and activation of H(2)O(2) as required for peroxidase activity. The results suggest that the proximal charge relay in peroxidases regulate the redox potential of the heme Fe but that the trans effect is a carefully balanced property that can both activate H(2)O(2) and attract ligation by the distal histidine. To understand the balance of forces that modulate peroxidase reactivity, we studied three M86 mutants, M86A, M86D, and M86E, by spectroelectrochemistry and nuclear magnetic resonance spectroscopy of (13)C- and (15)N-labeled cyanide adducts as probes of the redox potential and of the trans effect in the heme Fe, both of which can be correlated with the proximity of negative charge to the N(δ) hydrogen of the proximal histidine, consistent with an Asp-His-Fe charge relay observed in heme peroxidases.

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Year:  2011        PMID: 21950839      PMCID: PMC4007314          DOI: 10.1021/bi201368u

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  46 in total

1.  Flavohemoglobin, a globin with a peroxidase-like catalytic site.

Authors:  M Mukai; C E Mills; R K Poole; S R Yeh
Journal:  J Biol Chem       Date:  2000-11-22       Impact factor: 5.157

2.  Probing the oxyferrous and catalytically active ferryl states of Amphitrite ornata dehaloperoxidase by cryoreduction and EPR/ENDOR spectroscopy. Detection of compound I.

Authors:  Roman Davydov; Robert L Osborne; Muralidharan Shanmugam; Jing Du; John H Dawson; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2010-10-27       Impact factor: 15.419

3.  Structure of dehaloperoxidase B at 1.58 A resolution and structural characterization of the AB dimer from Amphitrite ornata.

Authors:  Vesna de Serrano; Jennifer D'Antonio; Stefan Franzen; Reza A Ghiladi
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-04-21

4.  Determinants of a protein fold. Unique features of the globin amino acid sequences.

Authors:  D Bashford; C Chothia; A M Lesk
Journal:  J Mol Biol       Date:  1987-07-05       Impact factor: 5.469

5.  Peroxidase isozymes from horseradish roots. I. Isolation and physical properties.

Authors:  L M Shannon; E Kay; J Y Lew
Journal:  J Biol Chem       Date:  1966-05-10       Impact factor: 5.157

6.  Resonance Raman study of ferric heme adducts of dehaloperoxidase from Amphitrite ornata.

Authors:  Jennifer Belyea; Curtis M Belyea; Simon Lappi; Stefan Franzen
Journal:  Biochemistry       Date:  2006-12-05       Impact factor: 3.162

7.  Paramagnetic 13C and 15N NMR analyses of the push and pull effects in cytochrome c peroxidase and Coprinus cinereus peroxidase variants: functional roles of highly conserved amino acids around heme.

Authors:  Daisuke Nonaka; Hiroyuki Wariishi; Karen G Welinder; Hiroshi Fujii
Journal:  Biochemistry       Date:  2010-01-12       Impact factor: 3.162

8.  Characterization of dehaloperoxidase compound ES and its reactivity with trihalophenols.

Authors:  Jeremiah Feducia; Rania Dumarieh; Lauren B G Gilvey; Tatyana Smirnova; Stefan Franzen; Reza A Ghiladi
Journal:  Biochemistry       Date:  2009-02-10       Impact factor: 3.162

9.  Solution structural characteristics of cyanometmyoglobin: resonance assignment of heme cavity residues by two-dimensional NMR.

Authors:  S D Emerson; G La Mar
Journal:  Biochemistry       Date:  1990-02-13       Impact factor: 3.162

10.  Solution characterisation by NMR spectroscopy of two horseradish peroxidase isoenzyme C mutants with alanine replacing either Phe142 or Phe143.

Authors:  N C Veitch; R J Williams; N M Bone; J F Burke; A T Smith
Journal:  Eur J Biochem       Date:  1995-10-15
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  3 in total

1.  Selective tuning of activity in a multifunctional enzyme as revealed in the F21W mutant of dehaloperoxidase B from Amphitrite ornata.

Authors:  Leiah M Carey; Kyung Beom Kim; Nikolette L McCombs; Paul Swartz; Cheal Kim; Reza A Ghiladi
Journal:  J Biol Inorg Chem       Date:  2017-11-23       Impact factor: 3.358

2.  Peroxygenase and oxidase activities of dehaloperoxidase-hemoglobin from Amphitrite ornata.

Authors:  David A Barrios; Jennifer D'Antonio; Nikolette L McCombs; Jing Zhao; Stefan Franzen; Andreas C Schmidt; Leslie A Sombers; Reza A Ghiladi
Journal:  J Am Chem Soc       Date:  2014-05-21       Impact factor: 15.419

3.  A model for the flexibility of the distal histidine in dehaloperoxidase-hemoglobin A based on X-ray crystal structures of the carbon monoxide adduct.

Authors:  Junjie Zhao; Vesna de Serrano; Stefan Franzen
Journal:  Biochemistry       Date:  2014-04-08       Impact factor: 3.162

  3 in total

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